mRNA_H-paniculata_contig51108.12410.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51108.12410.1
Unique NamemRNA_H-paniculata_contig51108.12410.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51108.12410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51108contigH-paniculata_contig51108:11..180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size170
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930498.8792288-CDS-H-paniculata_contig51108:10..1781622930498.8792288-CDS-H-paniculata_contig51108:10..178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51108 11..178 +
1691481319.8848183-CDS-H-paniculata_contig51108:10..1781691481319.8848183-CDS-H-paniculata_contig51108:10..178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51108 11..178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51108.12410.1prot_H-paniculata_contig51108.12410.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51108 11..178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51108.12410.1

>prot_H-paniculata_contig51108.12410.1 ID=prot_H-paniculata_contig51108.12410.1|Name=mRNA_H-paniculata_contig51108.12410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
LLGGLQADTSPAKNYAVEIPPREYSPGITALQAYLSQCKSLLPLGSPVIM
TTGKPP
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mRNA from alignment at H-paniculata_contig51108:11..180+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51108.12410.1 ID=mRNA_H-paniculata_contig51108.12410.1|Name=mRNA_H-paniculata_contig51108.12410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=170bp|location=Sequence derived from alignment at H-paniculata_contig51108:11..180+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTGGGAGGGCTGCAAGCAGACACCTCCCCGGCAAAAAATTATGCGGT
AGAGATACCCCCGAGGGAGTATTCTCCAGGGATTACAGCACTCCAGGCTT
ATCTCAGCCAGTGCAAGAGCCTGCTCCCCCTGGGGTCACCAGTCATTATG
ACCACTGGCAAGCCCCCGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig51108:11..180+

>mRNA_H-paniculata_contig51108.12410.1 ID=mRNA_H-paniculata_contig51108.12410.1|Name=mRNA_H-paniculata_contig51108.12410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig51108:11..180+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTGGGAGGGCTGCAAGCAGACACCTCCCCGGCAAAAAATTATGCGGT
AGAGATACCCCCGAGGGAGTATTCTCCAGGGATTACAGCACTCCAGGCTT
ATCTCAGCCAGTGCAAGAGCCTGCTCCCCCTGGGGTCACCAGTCATTATG
ACCACTGGCAAGCCCCCGTTGTTGGGAGGGCTGCAAGCAGACACCTCCCC
GGCAAAAAATTATGCGGTAGAGATACCCCCGAGGGAGTATTCTCCAGGGA
TTACAGCACTCCAGGCTTATCTCAGCCAGTGCAAGAGCCTGCTCCCCCTG
GGGTCACCAGTCATTATGACCACTGGCAAGCCCCCG
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