mRNA_H-paniculata_contig511.12409.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig511.12409.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 1.160e-9 Identity = 65/177 (36.72%), Postives = 87/177 (49.15%), Query Frame = 1
Query: 742 CLEAFAVVLIQAFSGTVS--FMPTRHLQLVSLQFCIACRSYSTLLVKLTKKTPRRLWISSPRELADPRASRRSPDMDRGSFVPSNRVPLVRACGLVVTSAMTARL-----DDFMCRENTL---------------FVNLRRLVFGPTFNRYIDSVETWPAMLQQLEFGKYFNKPIAG 1206
CL+AF V L QA G ++ T LQLVSL+FC ACRS + V++ ++TP LW SPR+ R R + +PS RVP V+A G + M L + EN F L RL+F R ++SV +WPA LQ+L FG +FN+PI G
Sbjct: 29 CLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLW--SPRKSHGTLKKR-----SREACIPS-RVPAVQANGWMWALPMEILLPRSATELHQVSENRQPTGPSSATSPGRMGWFQKLTRLMFYS--ERSVNSV-SWPACLQELSFGDFFNQPIIG 194
BLAST of mRNA_H-paniculata_contig511.12409.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 7.750e-8 Identity = 60/174 (34.48%), Postives = 78/174 (44.83%), Query Frame = 1
Query: 742 CLEAFAVVLIQAFSGTVS--FMPTRHLQLVSLQFCIACRSYSTLLVKLTKKTPRRLWISSPRELADPRASRRSPDMDRGSFVPSNRVPLVRACGL---------VVTSAMTARLDDFMCRENT------------LFVNLRRLVFGPTFNRYIDSVETWPAMLQQLEFGKYFNK 1194
CL AF V L Q +G + T LQLVSL+FC ACR TL V++ ++TPR LW + SR + SNRVP V+A GL + TSA+ R R + L + L+RLVF S +WPA L QL FG F++
Sbjct: 17 CLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREA--------CVSNRVPAVQASGLTWALDMEVLLQTSAVELRSRSKYRRVSGNSSTASLGSMFWLQMMLKRLVFDSDMPA---STASWPASLPQLLFGDRFDQ 179
BLAST of mRNA_H-paniculata_contig511.12409.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 2.500e-6 Identity = 48/145 (33.10%), Postives = 74/145 (51.03%), Query Frame = 1
Query: 796 FMPTRHLQLVSLQFCIACRSYSTLLVKLTKKTPRRLW--ISSPRELADPRASRRSPDMDRGSFVPSNRVPLVRACGLV--VTSAMTARLDDFMCRENTLFVNLRRLVFGPTFNRYIDSVETWPAMLQQLEF--GKYFNKPIAGVK 1212
+ T+ LQ SL+FCIACR Y TL +++ +TPR L + +P SP R RVP +RA ++ + +A + F ++ + RL FGP F ++SV WP L++++F G FN+PI GV+
Sbjct: 8 YTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAP-----------SPHSKRPC---RTRVPRLRARRVIWNMPTATELKSPIFALKD------VVRLDFGPAFEGSLESV-AWPQRLKEIDFSWGSLFNQPIEGVE 131
BLAST of mRNA_H-paniculata_contig511.12409.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 2.670e-6 Identity = 48/161 (29.81%), Postives = 76/161 (47.20%), Query Frame = 1
Query: 742 CLEAFAVVLIQAFSGTVSFMPTRHLQLVSLQFCIACRSYSTLLVKLTKKTPRRLWISSPRELADPRASRRSPDMDRGSFVPSNRVPLVRACGLVVTSAMTARLDDFMCRENTLFV--NLRRLVFGPTFNRYIDSVETWPAMLQQLEF--GKYFNKPIAGVK 1212
CL + V L + GT + T+ LQ SL+FCIACR+Y + +K+ + PR L ++ P+ + RVP +RA + A L N +F ++ L FG TF+ +++V TWP L+ +EF FN+P+ +K
Sbjct: 14 CLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKR------------LCWTRVPRLRARSVTWNMRAAAELG------NPIFAITDVDCLEFGGTFDGSLEAV-TWPRRLKMIEFLYTSPFNQPLELIK 155
BLAST of mRNA_H-paniculata_contig511.12409.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 53.9 bits (128), Expect = 5.180e-5 Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 1
Query: 730 RASLCLEAFAVVLIQAFSGTVS--FMPTRHLQLVSLQFCIACRSYSTLLVKLTKKTPRRLWISSPR 921
R S CL+AF V L Q G + T LQLVSL+FC ACR TL V++ ++TPR LW SPR
Sbjct: 37 RRSKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLW--SPR 100 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig511.12409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig511.12409.1 >prot_H-paniculata_contig511.12409.1 ID=prot_H-paniculata_contig511.12409.1|Name=mRNA_H-paniculata_contig511.12409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=449bp MDDVLTSSGSGSGVAGAGNTRSEEKRASLCLEAFAVVLIQAFSGTVSFMPback to top mRNA from alignment at H-paniculata_contig511:30149..33493- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig511.12409.1 ID=mRNA_H-paniculata_contig511.12409.1|Name=mRNA_H-paniculata_contig511.12409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3345bp|location=Sequence derived from alignment at H-paniculata_contig511:30149..33493- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig511:30149..33493- >mRNA_H-paniculata_contig511.12409.1 ID=mRNA_H-paniculata_contig511.12409.1|Name=mRNA_H-paniculata_contig511.12409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2694bp|location=Sequence derived from alignment at H-paniculata_contig511:30149..33493- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |