mRNA_H-paniculata_contig5109.12407.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5109.12407.1
Unique NamemRNA_H-paniculata_contig5109.12407.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5109.12407.1 vs. uniprot
Match: A0A6H5KQ23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ23_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.460e-36
Identity = 75/102 (73.53%), Postives = 85/102 (83.33%), Query Frame = 3 
Query:  744 PVKRLVIGEGVVFEGTTEGCDVAVVGGKLRGTVKSRRLELMKVGKMEGMIIAETAEIAGVFEGNLAISKNLKICSTGRVKGDISFGSIVVENGGKLEGKVNF 1049
            P   LVIGEGV+FEG TEGC  AVVGGKL GTVKS+RLE+ + GKMEG  + E AEIAG FEGNL ++K LKICSTGR KG++SFGSIVVENGGKLEGKVN+
Sbjct:  143 PSNSLVIGEGVLFEGATEGCAAAVVGGKLVGTVKSKRLEVTRAGKMEGTAVVEMAEIAGAFEGNLTVTKALKICSTGRFKGEVSFGSIVVENGGKLEGKVNY 244
[Close]
BLAST of mRNA_H-paniculata_contig5109.12407.1 vs. uniprot
Match: A0A2H6B306_9BACT (Uncharacterized protein n=1 Tax=bacterium HR40 TaxID=2035435 RepID=A0A2H6B306_9BACT)

HSP 1 Score: 79.7 bits (195), Expect = 1.410e-13
Identity = 46/118 (38.98%), Postives = 73/118 (61.86%), Query Frame = 3 
Query:  702 AASASQTSGPAPHAPV-KRLVIGEGVVFEGTTEGCDVAVVGGKLRGTV-KSRRLELMKVGKM-EGMIIAETAEIAGVFEGNLAISKNLKICSTGRVKGDISFGSIVVENGGKLEGKVN 1046
            AA+  + + PAP A   KRL++G+G+   G    CD  VV G ++ T+ ++R +E+ + G+   G    E AEI+GV+EG+L +   L I STGRV G++ +G I +E GG++ G V+
Sbjct:   36 AAAGERRTSPAPTATDGKRLIVGQGISLSGEITACDRLVVEGSVQVTLNQTRAIEITETGRFTNGKAEVEEAEISGVYEGDLIVRNRLLIRSTGRVTGNVRYGEIEIERGGRISGNVS 153
[Close]
BLAST of mRNA_H-paniculata_contig5109.12407.1 vs. uniprot
Match: A0A2E3XDE6_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E3XDE6_9PROT)

HSP 1 Score: 78.6 bits (192), Expect = 2.630e-13
Identity = 40/97 (41.24%), Postives = 61/97 (62.89%), Query Frame = 3 
Query:  753 RLVIGEGVVFEGTTEGCDVAVVGGKLRGTVKSRRLELMKVGKMEGMIIAETAEIAGVFEGNLAISKNLKICSTGRVKGDISFGSIVVENGGKLEGKV 1043
            R+ IG G+  +G    C V V+ G++ GTV+ ++LE++  G  +G    ETAEI G+F+G+L +S  LKI  +G V G++ +  I V  GG+L GKV
Sbjct:   40 RMTIGPGIEMKGEISKCAVLVIEGEVEGTVQCQQLEILSRGVFKGTAQVETAEIEGIFDGDLNVSGLLKIEKSGSVSGNVFYNQITVSAGGQLSGKV 136
[Close]
BLAST of mRNA_H-paniculata_contig5109.12407.1 vs. uniprot
Match: A0A0N0GPL2_9NEIS (Polymer-forming cytoskeletal n=1 Tax=Amantichitinum ursilacus TaxID=857265 RepID=A0A0N0GPL2_9NEIS)

HSP 1 Score: 75.1 bits (183), Expect = 1.190e-11
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 3 
Query:  714 SQTSGPAPHAPVKRLVIGEGVVFEGTTE-GCDVAVVGGKLRGTVKSRRLELMKVGKMEGMIIAETAEIAGVFEGNLAISKNLKICSTGRVKGDISFGSIVVENGGKLEGKV 1043
            ++T  PA      RL++G  V  +G     CD  VV G++  T+ SR + + + G   G +  + AEI GVFEG L     L I +TGRVKG I +G +++E+GG + G+V
Sbjct:   65 TETHAPAVEPSGSRLIVGPDVKLKGAEILDCDTLVVEGRVEATMDSRVIRIAEGGSFSGKVGIDVAEIYGVFEGELTARDQLIIHATGRVKGKIRYGKLLIESGGAISGEV 175
[Close]
BLAST of mRNA_H-paniculata_contig5109.12407.1 vs. uniprot
Match: UPI00037942E9 (polymer-forming cytoskeletal protein n=1 Tax=Uliginosibacterium gangwonense TaxID=392736 RepID=UPI00037942E9)

HSP 1 Score: 74.3 bits (181), Expect = 2.740e-11
Identity = 48/132 (36.36%), Postives = 71/132 (53.79%), Query Frame = 3 
Query:  654 PVANKVPIVSRASTHMAASASQTSGPAP-HAPVKRLVIGEGVVFEGTTE-GCDVAVVGGKLRGTVKSRRLELMKVGKMEGMIIAETAEIAGVFEGNLAISKNLKICSTGRVKGDISFGSIVVENGGKLEGKV 1043
            P AN      + +T    +    S PAP + P  RL++G  V  +G     CD  VV G++  T+ SR + + + G   G +  + AEI G FEG L     L I ++GRVKG+I +GSI++E GG++ G V
Sbjct:   44 PTANAALAARQLATAPVETPMNISAPAPVNEPSSRLIVGPEVKLKGAEILDCDTLVVEGRVEATMDSRVIRIAENGSFSGKVGIDIAEIHGQFEGELTARTQLIIHASGRVKGNIRYGSILIEAGGQISGDV 175
[Close]
BLAST of mRNA_H-paniculata_contig5109.12407.1 vs. uniprot
Match: UPI0004129DBE (polymer-forming cytoskeletal protein n=1 Tax=Niveispirillum irakense TaxID=34011 RepID=UPI0004129DBE)

HSP 1 Score: 75.1 bits (183), Expect = 3.960e-11
Identity = 36/113 (31.86%), Postives = 67/113 (59.29%), Query Frame = 3 
Query:  720 TSGPAPHAPVKRLVIGEGVVFEGTTEGCDVAVVGGKLRGTVKS-RRLELMKVGKMEGMIIAETAEIAGVFEGNLAISKNLKICSTGRVKGDISFGSIVVENGGKLEGKVNFPT 1055
            T+  A  A +++L++G  +   G    CDV VV G +   ++  R +E+   G  +G +  + A+I G FEG++ +   LK+ +TG+++G++ +G++ VENGG+L G +   T
Sbjct:  124 TTPAASSAEMRKLIVGRDISLSGEIAACDVLVVEGTVEAKLRDGRTIEIADTGLFKGSVEIDDADIGGRFEGDITVRGTLKVRATGKIQGNVRYGTLEVENGGQLSGSIEVLT 236
[Close]
BLAST of mRNA_H-paniculata_contig5109.12407.1 vs. uniprot
Match: A0A239KCY7_9PROT (Protein CcmA, bactofilin family n=4 Tax=Azospirillaceae TaxID=2829815 RepID=A0A239KCY7_9PROT)

HSP 1 Score: 74.3 bits (181), Expect = 6.360e-11
Identity = 48/156 (30.77%), Postives = 83/156 (53.21%), Query Frame = 3 
Query:  606 PDLVPPTATKPAVMTAPVA---NKVP--IVSRASTHMAASASQTSGPAPHAPVKRLVIGEGVVFEGTTEGCDVAVVGGKLRGTVKSRRL-ELMKVGKMEGMIIAETAEIAGVFEGNLAISKNLKICSTGRVKGDISFGSIVVENGGKLEGKVNFPT 1055
            P +  P +T PA  TAP A   + +P  +V    T    +   T    P   +++L++G  +   G    CDV VV G +   ++  R+ E+   G  +G +  + A+I G FEG++ +   L++ +TG+++G+I +G++ VENGG+L G V   T
Sbjct:   76 PSMNTPFSTSPAPGTAPGAALKSDIPRRVVDIPGTPPKRTTPSTDSATPATEMRKLIVGRDISLSGEIAACDVLVVEGTVEAKLRDGRIVEIADTGLFKGSVEIDDADIGGRFEGDITVRGTLRVRATGKIQGNIRYGTLEVENGGQLSGTVEVLT 231
[Close]
BLAST of mRNA_H-paniculata_contig5109.12407.1 vs. uniprot
Match: A0A840RN51_9NEIS (Cytoskeletal protein CcmA (Bactofilin family) n=1 Tax=Silvimonas terrae TaxID=300266 RepID=A0A840RN51_9NEIS)

HSP 1 Score: 72.4 bits (176), Expect = 8.910e-11
Identity = 41/116 (35.34%), Postives = 65/116 (56.03%), Query Frame = 3 
Query:  714 SQTSGPA-PHAPV----KRLVIGEGVVFEGTTE-GCDVAVVGGKLRGTVKSRRLELMKVGKMEGMIIAETAEIAGVFEGNLAISKNLKICSTGRVKGDISFGSIVVENGGKLEGKV 1043
            ++T  PA P AP      RL++G  V   G     CD  VV G++  T+ SR + + + G   G +  + AE+ G F+G L   + L I +TGRVKG I +G +++E+GG + G++
Sbjct:   54 AETKAPAAPQAPADHGGNRLIVGPDVKLRGAEILDCDTLVVEGRVEATMDSRVIRIAEGGSFSGKVSIDVAEVHGTFDGELTAREQLIIHATGRVKGTIRYGKLLIESGGTISGEI 169
[Close]
BLAST of mRNA_H-paniculata_contig5109.12407.1 vs. uniprot
Match: A0A3A3FI98_9BURK (Polymer-forming cytoskeletal protein n=1 Tax=Noviherbaspirillum saxi TaxID=2320863 RepID=A0A3A3FI98_9BURK)

HSP 1 Score: 72.4 bits (176), Expect = 1.160e-10
Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 3 
Query:  756 LVIGEGVVFEGTTEGCDVAVVGGKLRGTVKSRRLELMKVGKMEGMIIAETAEIAGVFEGNLAISKNLKICSTGRVKGDISFGSIVVENGGKLEGKV 1043
            LVIG GV   G    C+  VV G +     SR L++   G  +G +  + AEI G FEG L   + L + +TG V G IS+G +VVE GG++ G V
Sbjct:   94 LVIGRGVKLVGEISNCETLVVDGDVEAKNDSRMLKIASNGSFKGTVNVDVAEIYGRFEGELVARQKLIVYATGSVTGQISYGKLVVEEGGRVSGSV 189
[Close]
BLAST of mRNA_H-paniculata_contig5109.12407.1 vs. uniprot
Match: A0A516SIU5_9BURK (Polymer-forming cytoskeletal protein n=1 Tax=Chitinimonas arctica TaxID=2594795 RepID=A0A516SIU5_9BURK)

HSP 1 Score: 71.6 bits (174), Expect = 1.820e-10
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 3 
Query:  753 RLVIGEGVVFEGTTE-GCDVAVVGGKLRGTVKSRRLELMKVGKMEGMIIAETAEIAGVFEGNLAISKNLKICSTGRVKGDISFGSIVVENGGKLEGKV 1043
            RL++G  V  +G     CD  VV G++  T+ SR L + + G   G +  + AEI G FEG L + + L + +TGR+KG I +G I VE GG+L G +
Sbjct:   65 RLIVGANVKLKGAEILDCDTLVVEGRVEATMDSRVLRIARHGAFAGKVSIDVAEIHGEFEGELLVREQLIVYATGRLKGQIRYGRIQVEEGGELAGDI 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5109.12407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ23_9PHAE1.460e-3673.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2H6B306_9BACT1.410e-1338.98Uncharacterized protein n=1 Tax=bacterium HR40 Tax... [more]
A0A2E3XDE6_9PROT2.630e-1341.24Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A0N0GPL2_9NEIS1.190e-1137.84Polymer-forming cytoskeletal n=1 Tax=Amantichitinu... [more]
UPI00037942E92.740e-1136.36polymer-forming cytoskeletal protein n=1 Tax=Uligi... [more]
UPI0004129DBE3.960e-1131.86polymer-forming cytoskeletal protein n=1 Tax=Nivei... [more]
A0A239KCY7_9PROT6.360e-1130.77Protein CcmA, bactofilin family n=4 Tax=Azospirill... [more]
A0A840RN51_9NEIS8.910e-1135.34Cytoskeletal protein CcmA (Bactofilin family) n=1 ... [more]
A0A3A3FI98_9BURK1.160e-1040.63Polymer-forming cytoskeletal protein n=1 Tax=Novih... [more]
A0A516SIU5_9BURK1.820e-1039.80Polymer-forming cytoskeletal protein n=1 Tax=Chiti... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5109contigH-paniculata_contig5109:4916..11084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score80.1
Seed ortholog evalue3.6e-12
Seed eggNOG ortholog595537.Varpa_6005
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Polymer-forming cytoskeletal
EggNOG OGs1N26P@1224,2VSIS@28216,4AE27@80864,COG1664@1,COG1664@2
COG Functional cat.M
Best tax levelComamonadaceae
Best eggNOG OGNA|NA|NA
Exons3
Model size2547
Cds size1683
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5109.12407.1prot_H-paniculata_contig5109.12407.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5109 5400..10191 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930498.1150827-UTR-H-paniculata_contig5109:4915..53991622930498.1150827-UTR-H-paniculata_contig5109:4915..5399Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5109 4916..5399 -
1691481319.4512515-UTR-H-paniculata_contig5109:4915..53991691481319.4512515-UTR-H-paniculata_contig5109:4915..5399Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5109 4916..5399 -
1622930498.158263-UTR-H-paniculata_contig5109:10191..105111622930498.158263-UTR-H-paniculata_contig5109:10191..10511Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5109 10192..10511 -
1691481319.4830582-UTR-H-paniculata_contig5109:10191..105111691481319.4830582-UTR-H-paniculata_contig5109:10191..10511Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5109 10192..10511 -
1622930498.1766438-UTR-H-paniculata_contig5109:11024..110841622930498.1766438-UTR-H-paniculata_contig5109:11024..11084Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5109 11025..11084 -
1691481319.492636-UTR-H-paniculata_contig5109:11024..110841691481319.492636-UTR-H-paniculata_contig5109:11024..11084Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5109 11025..11084 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930498.129956-CDS-H-paniculata_contig5109:5399..65031622930498.129956-CDS-H-paniculata_contig5109:5399..6503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5109 5400..6503 -
1691481319.463784-CDS-H-paniculata_contig5109:5399..65031691481319.463784-CDS-H-paniculata_contig5109:5399..6503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5109 5400..6503 -
1622930498.1432364-CDS-H-paniculata_contig5109:9612..101911622930498.1432364-CDS-H-paniculata_contig5109:9612..10191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5109 9613..10191 -
1691481319.4737973-CDS-H-paniculata_contig5109:9612..101911691481319.4737973-CDS-H-paniculata_contig5109:9612..10191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5109 9613..10191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5109.12407.1

>prot_H-paniculata_contig5109.12407.1 ID=prot_H-paniculata_contig5109.12407.1|Name=mRNA_H-paniculata_contig5109.12407.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=561bp
MRMFSRRRSSKSLTVQIGYGDLGTNKHGSKKNLDGSVHGGSTVGSVVPEA
DSFSRPVSSGTASTLPMAESSPAEVPDLVPPTATKPAVMTAPVANKVPIV
SRASTHMAASASQTSGPAPHAPVKRLVIGEGVVFEGTTEGCDVAVVGGKL
RGTVKSRRLELMKVGKMEGMIIAETAEIAGVFEGNLAISKNLKICSTGRV
KGDISFGSIVVENGGKLEGKVNFPTSLVPAPASASALAATPTPVPAAAAG
VAKPKAPKAAPALAPAPAAVTRAIAKADVAPSVSPSSAAVSKTLVAPVKS
TVPAVTKAAVAPSSESSVPVVTKTAVAPSSASPVPAVTKTAVAPSSVSSA
PVVMKAAVAPSSASSAPVVIKTVVAPSSVSSAPVMKAAVAPFSASSVPAV
TKTAIAPSSVSSAPAVTKTVVAPPSASSAPVAKPTTAVAAATGPSVSSLI
AAKQATQSGPSVASLIAAKQSTTLPSVSSLVAARQRTPSSSFSSSASTSK
TNNVIAAAAAALKPIKAPTTSGGGIVAATVAARDGSSASVSSSSSGSPTL
LATMGHQKPE*
back to top

mRNA from alignment at H-paniculata_contig5109:4916..11084-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5109.12407.1 ID=mRNA_H-paniculata_contig5109.12407.1|Name=mRNA_H-paniculata_contig5109.12407.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6169bp|location=Sequence derived from alignment at H-paniculata_contig5109:4916..11084- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCAAATCCACAGCAGGACTGGGGACTGCGGTAGACTACAGGCATCTGC
GGAGAGACCGGTGAGTTCCAATCGGTTCGTGATGTGACGGACCTGACCTA
ACGTAACTCGCTGCTGCTGATGCTGCTGCCGCTGCCGCTGCTGCTACTTG
TACTTGTATCGAAGCCTGTCCCAGTGAACGAAGCAACCCAAGGAAAATAG
GAAATTTGGAGTGTGCGACAGCACAAAAAGGAAGCAGAGAGCGTTCACCT
GTGTGCTAACATACACACACTTGGTTTCTCATTTTCATCAATTCCGTGAT
ACCCAGAGCCGCCTGAAACCCTCAGGATTTTCTTGCAGCTTCAACCTTTT
CACAACCCGCCTACAATTTTTTCCCTTACCCAACGAGCTCCCTCCTGTCG
CCGGACCGCAACAAGACACACCGCGAGCGCTTTGCTCCTTTTCTCTCTCC
CCTGGTCCCCTCCCCTCGCCTCCCACTACTTTTCACGCCCCAATAGCTTT
TGAAGAGCAAAACAACCCCCCATTGCTACGACGGCGCCCTCATTGCTTCT
GCCTGCGTTTATCACCAGCACAGGCAGCCAGCAAGACACCGACACCAGCA
ACAACAGCAGCAGCCAGCAGCAGCAGCAGGACCAGCTGCAGCGGAGTCAA
GGAGTGCGTACCGCTTCTCAGGGTCAATTAGCTCGTACCCTACCACCTCC
TCGGACGTCTCTATACGGGTTAGGTTGGGTCGCCCGTTTCTTCGACCGAA
AATCGCCGGCTTCCGTACATCTTGACGGCAACAGCAACAACGATAGAAGC
GGAAGCCGTGTCAGGAAAAAGCCCCTGCTACTACGCACACCCGCCTACGA
TAAATTTAGCAACAGCCGCACAAGCAACCCCACCAGGTGCAACATGAGGA
TGTTCTCTAGGCGGCGCTCTTCCAAGAGCCTCACCGTCCAGATCGGCTAT
GGCGACCTCGGCACAAACAAGCATGGCTCCAAGAAAAATCTTGACGGCTC
AGTCCACGGTGGTAGCACCGTTGGCAGCGTCGTACCCGAGGCTGACTCGT
TCTCCCGCCCTGTCTCTTCAGGAACTGCCTCGACGCTGCCGATGGCAGAA
TCCTCGCCCGCCGAAGTGCCCGATCTGGTGCCCCCGACTGCGACGAAGCC
GGCAGTGATGACCGCACCAGTCGCAAACAAGGTCCCAATTGTGTCAAGAG
CGTCAACGCACATGGCGGCGTCGGCATCGCAGACTTCAGGCCCTGCACCC
CACGCGCCGGTCAAGAGGCTGGTGATTGGGGAAGGAGTTGTGTTCGAGGG
CACCACGGAAGGGTGCGATGTTGCGGTAGTGGGGGGGAAGCTGAGAGGTA
CCGTGAAGAGCCGCAGACTGGAGTTGATGAAGGTGGGTAAAATGGAAGGG
ATGATCATCGCGGAGACGGCAGAAATCGCGGGCGTGTTCGAGGGGAACCT
GGCGATTTCCAAAAATCTCAAGGTGTGAAATATATACCAGTATGAATTAG
GTGAACTTGATTTTTGGATTTTTGGATTTCGAGACAGATACTATCATGAA
GTCAGTCGTTCATGCATCGTTTCATGGCCACAGAAGAAATCACCTAAGCT
AAATATTTACCTACCCCGCTTCTGGGCTTTGCACGGCCCAGTCCCACCAT
CTACCTCATGTATGTTCATGCGTCCGCGGTGAAGGCATCCGTTACTGACT
AGGGCAAGATATTATTCTCTGGGTTTTGGTTTCGCGGTATGTTTTGTTGC
CTCCTCGAGAATAATTAGTGCAGGGGCATATTTTTGCCTATGCTCTGCTC
CTTGTTGGGATCATGATGGATGGCGAAGTGGAACGTCGAATCAGGCGGAA
AAACAGGACAACGTGGATCAGGGTTGTGTGTATTGTAGACATTAGCCAGT
CTAGAAAGGTGGTTCATCGGTGCATCGTGAGAGCACGAGAGGGTGGGTGG
CTGTGTGGTTGGTGTAGATTTTTACATTTCCGGCTGGTCTTTCTTTGCCA
ACCATCGAAAAACAATTGAATTCACATCTACCCAAAACATTTGCGGCCCA
ACTGCCAGTGTTTTTATTCCTGTACACGAAATATTTCTTCATCAACCAGC
ACGCATTCAATCTGTACTGCACTTGTACTACCTGTACACGGGTATTGAAT
CATCGAACAAAAATAATAACAATTGTGTTCTACCTTCCTATGAGGTACTC
TCCACATACGGCAAATATGATAATCGATTCTCTAACATAGAAACTGTTTT
TCTAGCCCGCCCAGCGTGTCGTAAACGTACAACAAGAGCTCTACTGGAGG
GTCACCATGAATACATCCTGCTGATATACACCACACCGCATCCCTGACAG
CCAAAACACGAATGACAGAAACGAAATATCAACGGTAGTTTTTCTGCGTC
CCATCCATCACCACGCTGTAATGTTTTTTTTAATGAATGTATTTTCTTTC
CAAAGTTTGTTGTCTACCTGTGGGTTTTCTAAGATAGATCGATGACATAC
AACGTCTGTATGCACGACAGACCCACAGATAGTCAGTCAGTTGCTGCTGC
AGTTCCCCAAACCTCTGGACGGTGTCGTCCATCGTGCAATGATGACGGCA
ACCTTCAGTAGCGCCTCGAACGTATTCAAGGCGGACCGTGGCGGACTAAC
ACACGACATGCACGATCACTTGTCAGCACTTCCTCCCTCTGTCAAACATG
AGACATGGAGTACTCGGTTCTCAAAGTTTCTATAGGTACGACGGGTGGAG
TGATTGTGATGATGAGACTATATTTCAACTTCAGGCCGTGCCTTATCTAG
ACACATTGCGCCGATTTAGAATATTTGTTTTGCGCGATTTTAAATTGGTT
TGAAATACCTGGATAAGACACGGCCTCAACGCCGCCAAAATGAAAAAATT
GAAACGAGTAGGGATGGGGCAGGTCGCCAGGTGAAACCAACGGAAAACGA
AGTAGTCTGTGACAACCATCTGCTATCATATTGAAGTGATTGACGATTTA
GGGAAACAGAGCCCCAATTTCTATTTCGAAAACGTTGGGCTCCGTTTCCC
TTAATCGCCAATCACTTTGGAAAAATTGCAGAGGGCTGTCGCTGGTCACT
TGGGTGTCACTTGGGGTTACTGGAGCCACCTGCCGGCTTCCCCACCCCTG
CTCATTTTCGTTGTCGCTAAAGATGTTCTGACTGTTCAGTGGCGCCCCGA
TGTACTCCAGATGGATGCTGGCGGGCTGGCGTACACCTGCACCTAGTATG
TCGGCATTTTTTCCCGTCTGTATAACTGGGCGTGCGGTAGGTAGAAGGTA
GCCTTTTCTAGTCAAGCTGTCATAATATATACTACGGTCAGTAGTGGGAT
ATATTAACAAAGACTAAGACAAGTTTATATCTCAATGAATACGAATCGGA
ATGGACCACATATTTTTGCGTTAGATCTGCATGAAAAAATTGAAGAAATC
CGTTCATAGGATGTTTTCGAAGAAAAAAATCGAGAAATTAGAGCTAGAAA
GCCGTATTTTTGGTAAGGAAATGATAATCGCCGTTAATAGCCAATTTACT
ATAGGAAAAACTGTTTTTTTTTCGGATTTCTTCATCGGTACATCAAAAAT
CGCAAAACGCCTTACCGTTTCCTTGGTGTTATTGAAACAACTGTGTAGAA
GCAATCCGTTTGTGAAAATACCTATTTTGTGCTGAAAAAGATAGGTTTGA
AAAGTCAAAATTTCCCCTAGGAACTGGGATATGGCATTTTTGTACGCAGG
TAGGCGGACTTTGTAGTATTTCTTGAGATGGAGGTTGCCGTTTCCATCTA
TATTTTGCACATTTCATACGGGTCTAACGCAAAATCCGTGTTCCAGTCCG
ATTCGTATTCATTGAGATATAAACTTAGTCTTTGTTAGTATGTCCCACTT
GGATATGTTTCCTTCATCGTTATATCCTTATAACCTATGTACGGTCACAA
GGACGATAAAAAAAACCCCGATAGGGTGTGTACTATTATGGGTTTGTGTG
CAAAATGTGTGCGTGTGTGTATTTGGGACATGTGTCAAATGCGAAACTTT
TGGACGTGTGTTCTCATGAGTACAAATTTATATAATTATTTAGATTAGAA
AAAAATTCTCTGGTAGACCAGTGTACTTACCCATCCACGAACCTGACTCC
ATGGTCATTCCCAAAACCGCTTCGGACCAGCGTAACTTTTGGACGGTTTG
GCACTGCTTGGAGTCCAGGTTAGGGCCAGGGTGATGCTCGCAAATTTGCC
CGTGCGTGCGATTTTGTCAACAACGAATCAAGTCAACATCATAGATACTT
GAGTCGGACAATACGGTGAAGTCGCCTCGGCATGAATCAACTGGTGCCCC
GCTCTATATAACGTTCGCGGAACATTTATTTTTCCAAATGATGGCTGCCG
AACTATGCCATCCTTAGCCCCATTGCCTTCCCACCGCACCCCGTCATACC
TTCCCCCAAAATGGGCACCACACGTTGATCCACCCCCATCTCCATCCCAC
TCAGCCCCTGAATTAACCCCACATTTCCTTGTCACCGTGTATGAAAACCC
TCGTGTCGGTCGGCTAATGCGACAAAAACAGATCTGCTCCACTGGGAGGG
TGAAGGGCGATATCTCGTTCGGCTCGATCGTAGTGGAGAACGGCGGCAAG
CTGGAGGGCAAGGTCAACTTTCCAACCAGCCTAGTGCCCGCCCCGGCGTC
GGCCTCCGCCCTCGCCGCCACCCCCACCCCGGTCCCCGCAGCAGCAGCAG
GAGTAGCAAAACCAAAGGCGCCAAAAGCAGCACCAGCACTAGCACCAGCA
CCAGCAGCCGTAACCAGAGCAATAGCCAAGGCAGATGTGGCACCCTCTGT
GTCGCCGTCTTCAGCCGCTGTCTCGAAGACGTTGGTAGCCCCAGTTAAAT
CGACCGTGCCCGCCGTCACGAAGGCAGCGGTAGCGCCGTCCTCGGAATCA
TCCGTGCCTGTCGTCACAAAGACAGCGGTAGCACCGTCCTCGGCATCACC
CGTGCCCGCCGTCACCAAGACAGCGGTAGCACCGTCCTCGGTATCATCCG
CGCCCGTCGTCATGAAGGCAGCGGTAGCGCCGTCCTCGGCATCATCCGCG
CCCGTCGTCATCAAGACAGTGGTAGCACCGTCGTCCGTATCATCCGCGCC
CGTCATGAAGGCAGCGGTAGCACCGTTCTCGGCATCATCCGTGCCCGCCG
TCACCAAGACAGCGATAGCACCGTCCTCGGTATCATCCGCGCCCGCCGTC
ACCAAGACAGTAGTAGCACCGCCCTCGGCATCATCCGCGCCTGTGGCGAA
GCCAACGACGGCAGTAGCAGCAGCAACAGGCCCCTCTGTTTCATCCCTGA
TTGCTGCCAAGCAGGCGACACAATCAGGACCCTCTGTCGCTTCATTGATC
GCGGCGAAGCAAAGTACTACTCTACCCTCGGTGTCGTCCTTGGTCGCCGC
CAGGCAACGTACTCCATCGTCTTCTTTTTCGTCGTCAGCTTCTACCAGCA
AGACAAACAACGTCATCGCTGCGGCTGCGGCCGCCTTGAAGCCCATCAAA
GCGCCGACGACATCTGGCGGTGGTATCGTTGCCGCTACCGTGGCTGCCAG
GGATGGTTCGTCGGCGTCGGTGTCATCGTCGTCCTCGGGATCACCAACCT
TGTTGGCAACGATGGGTCATCAAAAACCGGAGTGATTTTTACAAAACGAA
TATTTGTTTGATTTTTGTTTGATTTTTTTCCTTTTTAATTTGTGCTGGAT
GTTTTTAGCTTTTTTGAGAGCTTGCTTGACTTGAGGGGGTCCGGAATCCG
ACCCTGATATACAATGATTGTGGGTGGCCAGTAAGTAGAGTAGCAGTCGT
GGAGTGAGAAATGAAAGAGGAAGGGAATGCGAGAGGTGAAAATTTTGCCT
CGTTTCTTGTTATATGGTGCCTTTTTGTTCTCTTTGTTTTTCCGGCGGGT
GTTGGTCCTGCTGAACCGTGTTACCGAGTGCTGCTTCAGTGCTCCTCTAT
CCTATCCCATCCCGTACCGCTTTGGATGATCGACAAAAGTGTTTGGGGTG
GGGAGGAAAGGGCTGCTATTTGGAGAGGATGAAAATAACTTGTTGATGAA
AAGAGAAAAAAAATGTTTTCAAGGCATTTTTTCGTGTGAAAAGTGAACTG
CGTTGTTTTATTTTAGGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5109:4916..11084-

>mRNA_H-paniculata_contig5109.12407.1 ID=mRNA_H-paniculata_contig5109.12407.1|Name=mRNA_H-paniculata_contig5109.12407.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3366bp|location=Sequence derived from alignment at H-paniculata_contig5109:4916..11084- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGATGTTCTCTAGGCGGCGCTCTTCCAAGAGCCTCACCGTCCAGAT
CGGCTATGGCGACCTCGGCACAAACAAGCATGGCTCCAAGAAAAATCTTG
ACGGCTCAGTCCACGGTGGTAGCACCGTTGGCAGCGTCGTACCCGAGGCT
GACTCGTTCTCCCGCCCTGTCTCTTCAGGAACTGCCTCGACGCTGCCGAT
GGCAGAATCCTCGCCCGCCGAAGTGCCCGATCTGGTGCCCCCGACTGCGA
CGAAGCCGGCAGTGATGACCGCACCAGTCGCAAACAAGGTCCCAATTGTG
TCAAGAGCGTCAACGCACATGGCGGCGTCGGCATCGCAGACTTCAGGCCC
TGCACCCCACGCGCCGGTCAAGAGGCTGGTGATTGGGGAAGGAGTTGTGT
TCGAGGGCACCACGGAAGGGTGCGATGTTGCGGTAGTGGGGGGGAAGCTG
AGAGGTACCGTGAAGAGCCGCAGACTGGAGTTGATGAAGGTGGGTAAAAT
GGAAGGGATGATCATCGCGGAGACGGCAGAAATCGCGGGCGTGTTCGAGG
GGAACCTGGCGATTTCCAAAAATCTCAAGATGAGGATGTTCTCTAGGCGG
CGCTCTTCCAAGAGCCTCACCGTCCAGATCGGCTATGGCGACCTCGGCAC
AAACAAGCATGGCTCCAAGAAAAATCTTGACGGCTCAGTCCACGGTGGTA
GCACCGTTGGCAGCGTCGTACCCGAGGCTGACTCGTTCTCCCGCCCTGTC
TCTTCAGGAACTGCCTCGACGCTGCCGATGGCAGAATCCTCGCCCGCCGA
AGTGCCCGATCTGGTGCCCCCGACTGCGACGAAGCCGGCAGTGATGACCG
CACCAGTCGCAAACAAGGTCCCAATTGTGTCAAGAGCGTCAACGCACATG
GCGGCGTCGGCATCGCAGACTTCAGGCCCTGCACCCCACGCGCCGGTCAA
GAGGCTGGTGATTGGGGAAGGAGTTGTGTTCGAGGGCACCACGGAAGGGT
GCGATGTTGCGGTAGTGGGGGGGAAGCTGAGAGGTACCGTGAAGAGCCGC
AGACTGGAGTTGATGAAGGTGGGTAAAATGGAAGGGATGATCATCGCGGA
GACGGCAGAAATCGCGGGCGTGTTCGAGGGGAACCTGGCGATTTCCAAAA
ATCTCAAGATCTGCTCCACTGGGAGGGTGAAGGGCGATATCTCGTTCGGC
TCGATCGTAGTGGAGAACGGCGGCAAGCTGGAGGGCAAGGTCAACTTTCC
AACCAGCCTAGTGCCCGCCCCGGCGTCGGCCTCCGCCCTCGCCGCCACCC
CCACCCCGGTCCCCGCAGCAGCAGCAGGAGTAGCAAAACCAAAGGCGCCA
AAAGCAGCACCAGCACTAGCACCAGCACCAGCAGCCGTAACCAGAGCAAT
AGCCAAGGCAGATGTGGCACCCTCTGTGTCGCCGTCTTCAGCCGCTGTCT
CGAAGACGTTGGTAGCCCCAGTTAAATCGACCGTGCCCGCCGTCACGAAG
GCAGCGGTAGCGCCGTCCTCGGAATCATCCGTGCCTGTCGTCACAAAGAC
AGCGGTAGCACCGTCCTCGGCATCACCCGTGCCCGCCGTCACCAAGACAG
CGGTAGCACCGTCCTCGGTATCATCCGCGCCCGTCGTCATGAAGGCAGCG
GTAGCGCCGTCCTCGGCATCATCCGCGCCCGTCGTCATCAAGACAGTGGT
AGCACCGTCGTCCGTATCATCCGCGCCCGTCATGAAGGCAGCGGTAGCAC
CGTTCTCGGCATCATCCGTGCCCGCCGTCACCAAGACAGCGATAGCACCG
TCCTCGGTATCATCCGCGCCCGCCGTCACCAAGACAGTAGTAGCACCGCC
CTCGGCATCATCCGCGCCTGTGGCGAAGCCAACGACGGCAGTAGCAGCAG
CAACAGGCCCCTCTGTTTCATCCCTGATTGCTGCCAAGCAGGCGACACAA
TCAGGACCCTCTGTCGCTTCATTGATCGCGGCGAAGCAAAGTACTACTCT
ACCCTCGGTGTCGTCCTTGGTCGCCGCCAGGCAACGTACTCCATCGTCTT
CTTTTTCGTCGTCAGCTTCTACCAGCAAGACAAACAACGTCATCGCTGCG
GCTGCGGCCGCCTTGAAGCCCATCAAAGCGCCGACGACATCTGGCGGTGG
TATCGTTGCCGCTACCGTGGCTGCCAGGGATGGTTCGTCGGCGTCGGTGT
CATCGTCGTCCTCGGGATCACCAACCTTGTTGGCAACGATGGGTCATCAA
AAACCGGAGTGAATCTGCTCCACTGGGAGGGTGAAGGGCGATATCTCGTT
CGGCTCGATCGTAGTGGAGAACGGCGGCAAGCTGGAGGGCAAGGTCAACT
TTCCAACCAGCCTAGTGCCCGCCCCGGCGTCGGCCTCCGCCCTCGCCGCC
ACCCCCACCCCGGTCCCCGCAGCAGCAGCAGGAGTAGCAAAACCAAAGGC
GCCAAAAGCAGCACCAGCACTAGCACCAGCACCAGCAGCCGTAACCAGAG
CAATAGCCAAGGCAGATGTGGCACCCTCTGTGTCGCCGTCTTCAGCCGCT
GTCTCGAAGACGTTGGTAGCCCCAGTTAAATCGACCGTGCCCGCCGTCAC
GAAGGCAGCGGTAGCGCCGTCCTCGGAATCATCCGTGCCTGTCGTCACAA
AGACAGCGGTAGCACCGTCCTCGGCATCACCCGTGCCCGCCGTCACCAAG
ACAGCGGTAGCACCGTCCTCGGTATCATCCGCGCCCGTCGTCATGAAGGC
AGCGGTAGCGCCGTCCTCGGCATCATCCGCGCCCGTCGTCATCAAGACAG
TGGTAGCACCGTCGTCCGTATCATCCGCGCCCGTCATGAAGGCAGCGGTA
GCACCGTTCTCGGCATCATCCGTGCCCGCCGTCACCAAGACAGCGATAGC
ACCGTCCTCGGTATCATCCGCGCCCGCCGTCACCAAGACAGTAGTAGCAC
CGCCCTCGGCATCATCCGCGCCTGTGGCGAAGCCAACGACGGCAGTAGCA
GCAGCAACAGGCCCCTCTGTTTCATCCCTGATTGCTGCCAAGCAGGCGAC
ACAATCAGGACCCTCTGTCGCTTCATTGATCGCGGCGAAGCAAAGTACTA
CTCTACCCTCGGTGTCGTCCTTGGTCGCCGCCAGGCAACGTACTCCATCG
TCTTCTTTTTCGTCGTCAGCTTCTACCAGCAAGACAAACAACGTCATCGC
TGCGGCTGCGGCCGCCTTGAAGCCCATCAAAGCGCCGACGACATCTGGCG
GTGGTATCGTTGCCGCTACCGTGGCTGCCAGGGATGGTTCGTCGGCGTCG
GTGTCATCGTCGTCCTCGGGATCACCAACCTTGTTGGCAACGATGGGTCA
TCAAAAACCGGAGTGA
back to top