mRNA_H-paniculata_contig5108.12405.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5108.12405.1
Unique NamemRNA_H-paniculata_contig5108.12405.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5108.12405.1 vs. uniprot
Match: D8LBI4_ECTSI (Purple acid phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI4_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.030e-21
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    1 YTSGFLHSATMVNLLPSTTYYYSCGDEALGMSSVRSFVTPPMVGGEQAVTFSVVGDLGQTEDS 189
            YTSGFLHSAT+  L PS+TY+YSCGD+ L MSSVRSF TPP VG EQ +T  V+GDLGQT+DS
Sbjct:  131 YTSGFLHSATLQGLEPSSTYFYSCGDDTLEMSSVRSFDTPPKVGPEQPITLGVLGDLGQTDDS 193          
BLAST of mRNA_H-paniculata_contig5108.12405.1 vs. uniprot
Match: D7FWJ2_ECTSI (Purple acid phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWJ2_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 2.570e-13
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 YTSGFLHSATMVNLLPSTTYYYSCGDEALGMSSVRSFVTPPMVGGEQAVTFSVVGDLGQTEDS 189
            YTSG+LHSA +  L PSTT +Y  GDE L +S+VR F TP +   EQ +   ++GDLGQT DS
Sbjct:  129 YTSGWLHSAVIQGLEPSTTIFYCVGDEDLALSTVRDFTTPGVFAPEQPLVLGILGDLGQTNDS 191          
BLAST of mRNA_H-paniculata_contig5108.12405.1 vs. uniprot
Match: A0A6A3MEB4_9STRA (Purple acid phosphatase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MEB4_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.280e-12
Identity = 38/66 (57.58%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 YTSGFLHSATMVN--LLPSTTYYYSCGDEALGMSSVRSFVTPPMVGGEQAVTFSVVGDLGQTEDSE 192
            Y S +LH  T+    L P TTYYY CGDEA G S+V SF T   VG E   TF V+GDLGQTE SE
Sbjct:  179 YKSPWLHHVTIPGDKLSPDTTYYYQCGDEAGGWSTVYSFKTAVPVGSEAPQTFGVIGDLGQTEYSE 244          
BLAST of mRNA_H-paniculata_contig5108.12405.1 vs. uniprot
Match: A0A3F2S309_9STRA (Purple acid phosphatase n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S309_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.550e-12
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 YTSGFLHSATMVN--LLPSTTYYYSCGDEALGMSSVRSFVTPPMVGGEQAVTFSVVGDLGQTEDSE 192
            YTS + H  T+    LLP TTYYY CGD+A G S V +F T   VG    +TF V+GDLGQTE SE
Sbjct:   64 YTSPWFHHVTIPGDKLLPDTTYYYQCGDDAGGWSDVYTFKTVVPVGSVAPLTFGVIGDLGQTEYSE 129          
BLAST of mRNA_H-paniculata_contig5108.12405.1 vs. uniprot
Match: D0MQE1_PHYIT (Purple acid phosphatase n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MQE1_PHYIT)

HSP 1 Score: 67.8 bits (164), Expect = 1.070e-11
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    1 YTSGFLHSATMVN--LLPSTTYYYSCGDEALGMSSVRSFVTPPMVGGEQAVTFSVVGDLGQTEDSE 192
            YTS +LH  T+    L P+T YYY CGDE  G S+V +F T   VG E + TF V+GDLGQTE SE
Sbjct:  119 YTSPWLHHVTIPGDKLEPNTNYYYQCGDETGGWSTVYTFKTAIPVGNETSQTFGVIGDLGQTEYSE 184          
BLAST of mRNA_H-paniculata_contig5108.12405.1 vs. uniprot
Match: A0A329SIR5_9STRA (Purple acid phosphatase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SIR5_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.090e-11
Identity = 37/66 (56.06%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 YTSGFLHSATMVN--LLPSTTYYYSCGDEALGMSSVRSFVTPPMVGGEQAVTFSVVGDLGQTEDSE 192
            YTS +LH  T+    L P+T YYY CGDE  G S+V SF T   VG E   TF V+GDLGQTE SE
Sbjct:  179 YTSPWLHHVTIPGDKLEPNTDYYYQCGDEIGGWSTVYSFKTAVPVGSEAPQTFGVIGDLGQTEYSE 244          
BLAST of mRNA_H-paniculata_contig5108.12405.1 vs. uniprot
Match: A0A7S1SRS7_9CHLO (Purple acid phosphatase n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SRS7_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 2.790e-11
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   10 GFLHSATMVNLLPSTTYYYSCGDEALGMSSVRSFVTPPMVGGEQAVTFSVVGDLGQTE 183
            G +H+AT+ +L P T Y+Y  GD+ LG+S +RSFVTPP VG +  V    V D+GQ E
Sbjct:  254 GMMHAATLTDLQPDTRYFYQHGDQKLGLSPIRSFVTPPRVGPDSEVRLLHVADMGQAE 311          
BLAST of mRNA_H-paniculata_contig5108.12405.1 vs. uniprot
Match: A0A5D6YDX0_9STRA (Purple acid phosphatase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDX0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.840e-10
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1
Query:    1 YTSGFLHSATM--VNLLPSTTYYYSCGDEALGMSSVRSFVTPPMVGGEQAVTFSVVGDLGQTEDSE 192
            YTS + H   +    LLPSTTY+Y CGD   G S V SF T    G  + ++F+V+GDLGQT+ SE
Sbjct:  591 YTSPWFHHVLIDGERLLPSTTYFYQCGDPDAGWSKVLSFTTALAAGSHEPISFAVIGDLGQTKFSE 656          
BLAST of mRNA_H-paniculata_contig5108.12405.1 vs. uniprot
Match: A0A7S0XUC5_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XUC5_HEMAN)

HSP 1 Score: 63.2 bits (152), Expect = 3.360e-10
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    1 YTSGFLHSATMVNLLPSTTYYYSCGD-EALGMSSVR--SFVTPPMVGGEQAVTFSVVGDLGQTEDSE 192
            YTS +LH   +  L  STTYYY+ GD  A    S+R  S  T P VGG+Q++TF+V+GDLGQTE SE
Sbjct:  148 YTSPYLHHVKLRGLNASTTYYYAVGDASAATTGSLRELSVRTLPAVGGKQSLTFTVIGDLGQTEFSE 214          
BLAST of mRNA_H-paniculata_contig5108.12405.1 vs. uniprot
Match: A0A3M6VV49_9STRA (Purple acid phosphatase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VV49_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.360e-10
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 YTSGFLHSATMVN--LLPSTTYYYSCGDEALGMSSVRSFVTPPMVGGEQAVTFSVVGDLGQT 180
            Y S +LH  T+    L P TTY+Y CGDE  G S+V SF T  +VG E+  TF V+GDLGQT
Sbjct:  129 YKSPWLHHVTIPGDKLKPDTTYFYQCGDEIGGWSTVYSFKTAVIVGDERPQTFGVIGDLGQT 190          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5108.12405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBI4_ECTSI1.030e-2171.43Purple acid phosphatase n=2 Tax=Ectocarpus TaxID=2... [more]
D7FWJ2_ECTSI2.570e-1353.97Purple acid phosphatase n=1 Tax=Ectocarpus silicul... [more]
A0A6A3MEB4_9STRA2.280e-1257.58Purple acid phosphatase n=4 Tax=Phytophthora TaxID... [more]
A0A3F2S309_9STRA7.550e-1254.55Purple acid phosphatase n=4 Tax=Phytophthora kerno... [more]
D0MQE1_PHYIT1.070e-1154.55Purple acid phosphatase n=2 Tax=Phytophthora infes... [more]
A0A329SIR5_9STRA1.090e-1156.06Purple acid phosphatase n=2 Tax=Phytophthora TaxID... [more]
A0A7S1SRS7_9CHLO2.790e-1150.00Purple acid phosphatase n=1 Tax=Tetraselmis chuii ... [more]
A0A5D6YDX0_9STRA1.840e-1048.48Purple acid phosphatase n=1 Tax=Pythium brassicum ... [more]
A0A7S0XUC5_HEMAN3.360e-1053.73Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A3M6VV49_9STRA3.360e-1053.23Purple acid phosphatase n=1 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5108contigH-paniculata_contig5108:357..551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue5.1e-12
Seed eggNOG ortholog2880.D8LBI4
KEGG koko:K22390
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.acid phosphatase activity
EggNOG OGsCOG1409@1,KOG1378@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size195
Cds size165
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930497.7993147-CDS-H-paniculata_contig5108:356..5211622930497.7993147-CDS-H-paniculata_contig5108:356..521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5108 357..521 -
1691481319.329888-CDS-H-paniculata_contig5108:356..5211691481319.329888-CDS-H-paniculata_contig5108:356..521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5108 357..521 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930497.8122005-UTR-H-paniculata_contig5108:521..5511622930497.8122005-UTR-H-paniculata_contig5108:521..551Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5108 522..551 -
1691481319.3446405-UTR-H-paniculata_contig5108:521..5511691481319.3446405-UTR-H-paniculata_contig5108:521..551Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5108 522..551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5108.12405.1prot_H-paniculata_contig5108.12405.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5108 357..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5108.12405.1

>prot_H-paniculata_contig5108.12405.1 ID=prot_H-paniculata_contig5108.12405.1|Name=mRNA_H-paniculata_contig5108.12405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MVNLLPSTTYYYSCGDEALGMSSVRSFVTPPMVGGEQAVTFSVVGDLGQT
EDSE*
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mRNA from alignment at H-paniculata_contig5108:357..551-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5108.12405.1 ID=mRNA_H-paniculata_contig5108.12405.1|Name=mRNA_H-paniculata_contig5108.12405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig5108:357..551- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACACAAGTGGATTCCTGCATTCGGCGACCATGGTGAACCTTCTGCCCTC GACGACGTACTACTACTCGTGCGGAGACGAAGCGCTCGGTATGAGCTCGG TGAGATCTTTCGTCACGCCGCCAATGGTCGGTGGCGAGCAGGCTGTAACC TTCAGCGTCGTCGGAGATTTGGGGCAGACGGAGGACTCAGAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5108:357..551-

>mRNA_H-paniculata_contig5108.12405.1 ID=mRNA_H-paniculata_contig5108.12405.1|Name=mRNA_H-paniculata_contig5108.12405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig5108:357..551- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAACCTTCTGCCCTCGACGACGTACTACTACTCGTGCGGAGACGA
AGCGCTCGGTATGAGCTCGGTGAGATCTTTCGTCACGCCGCCAATGGTCG
GTGGCGAGCAGGCTGTAACCTTCAGCGTCGTCGGAGATTTGGGGCAGACG
GAGGACTCAGAGTGAATGGTGAACCTTCTGCCCTCGACGACGTACTACTA
CTCGTGCGGAGACGAAGCGCTCGGTATGAGCTCGGTGAGATCTTTCGTCA
CGCCGCCAATGGTCGGTGGCGAGCAGGCTGTAACCTTCAGCGTCGTCGGA
GATTTGGGGCAGACGGAGGACTCAGAGTGA
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