mRNA_H-paniculata_contig51079.12404.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: D8LLK1_ECTSI (Deubiquitinating enzyme A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK1_ECTSI) HSP 1 Score: 87.0 bits (214), Expect = 2.900e-18 Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 1
Query: 46 GGSPSNSEDSLCSSDSVFREAMRRKGLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVR 219
GGS +SE++ ++D FREAMRR GL VVDVEPDGNCLFRSVSHQIYGD DRH VR
Sbjct: 490 GGSGEDSEEA--AADRAFREAMRRTGLSVVDVEPDGNCLFRSVSHQIYGDADRHYPVR 545
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: A0A6H5K5G6_9PHAE (Deubiquitinating enzyme A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G6_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 2.630e-17 Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 1
Query: 46 GGSPSNSEDSLCSSDSVFREAMRRKGLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVR 219
GGS +SE++ + FREAMRR GL VVDVEPDGNCLFRSVSHQIYGD DRH VR
Sbjct: 992 GGSGEDSEEAAV--ERAFREAMRRTGLSVVDVEPDGNCLFRSVSHQIYGDADRHYPVR 1047
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: A0A0R3UJJ3_MESCO (Deubiquitinating enzyme A n=2 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3UJJ3_MESCO) HSP 1 Score: 63.5 bits (153), Expect = 5.260e-10 Identity = 34/83 (40.96%), Postives = 46/83 (55.42%), Query Frame = 1
Query: 16 LPRCVDPLTGGGSPSNSED-------------SLCSSDSVFREAMRRKGLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVRSR 225
L C+D +T G+ +NSED S +S+ + +KGL VV V DG CLFRSVSHQ+YGD ++H VR +
Sbjct: 154 LSDCLDDVTEAGAGNNSEDEYYNITDTATQNTSKAEDNSLEQLLKEKKGLKVVRVHGDGACLFRSVSHQVYGDEEKHEIVRKQ 236
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: J6F765_TRIAS (OTU domain-containing protein n=2 Tax=Trichosporon asahii var. asahii TaxID=189963 RepID=J6F765_TRIAS) HSP 1 Score: 62.8 bits (151), Expect = 9.910e-10 Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 1
Query: 13 PLPRCVDPLTGGGSPSNSEDSLCSSDSVFREAMRRKGLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVRSR 225
P PR G +P + E SD+V E +R GL + V PDGNCLFR++S Q++GD RH +VR R
Sbjct: 162 PRPRATRSRRGSATPVSLESIAAESDAVRAEVVRL-GLSIRKVAPDGNCLFRALSDQLWGDQSRHVEVRKR 231
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: UPI001CF223B5 (uncharacterized protein LOC114947944 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF223B5) HSP 1 Score: 62.4 bits (150), Expect = 1.360e-9 Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 1
Query: 37 LTGGGSPSNSEDS--LC--SSDSVFREAMRRKGLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVR 219
L G + +N+ S +C S+SVF +RR GL ++V +GNCLFR+++HQIYGD +RH ++R
Sbjct: 355 LNPGPTTTNTSSSQMMCREGSNSVFNSRLRRYGLRALEVGGNGNCLFRAIAHQIYGDANRHLEIR 419
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: D8LCC5_ECTSI (Deubiquitinating enzyme A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCC5_ECTSI) HSP 1 Score: 62.0 bits (149), Expect = 1.870e-9 Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 76 LCSSDSVFREAMRRKGLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVRSR 225
L S +R A+ +GL VV VE DGNCLFRSVSHQ+YGD + H VR+R
Sbjct: 323 LSSRYEHYRRALGSRGLRVVPVEGDGNCLFRSVSHQVYGDDNHHRLVRAR 372
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: A0A7S2XFD6_9EUKA (Deubiquitinating enzyme A n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XFD6_9EUKA) HSP 1 Score: 61.2 bits (147), Expect = 3.080e-9 Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1
Query: 58 SNSEDSLCSSDSVFREAMRRK-GLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVR 219
S E + FREA++ K G V+D++ DGNCLFRS +HQI+GD ++H QVR
Sbjct: 87 SEIEKKKAEEEKNFREALKSKYGYEVIDIDKDGNCLFRSFAHQIHGDKEKHEQVR 141
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: UPI00077AAFB6 (OTU domain-containing protein 3-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AAFB6) HSP 1 Score: 60.8 bits (146), Expect = 3.130e-9 Identity = 24/45 (53.33%), Postives = 35/45 (77.78%), Query Frame = 1
Query: 85 SDSVFREAMRRKGLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVR 219
S+SVF +RR GL ++V +GNCLFR+++HQIYGD +RH ++R
Sbjct: 7 SNSVFNSRLRRYGLRALEVGGNGNCLFRAIAHQIYGDANRHLEIR 51
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: A0A5D6YD11_9STRA (Deubiquitinating enzyme A n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YD11_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 4.800e-9 Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1
Query: 97 FREAMRRKGLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVRS 222
+REA+ R GL + ++ DGNCLFRSVSHQ+YGD HA VR+
Sbjct: 468 YREALERHGLRICPIDGDGNCLFRSVSHQVYGDDRHHAAVRA 509
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: A0A7S4MQ37_9STRA (Deubiquitinating enzyme A n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MQ37_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 6.520e-9 Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 1
Query: 73 SLCSSDSVFREAMRRKGLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVRSR 225
S C +D F EA++++GL + + E DGNCLFR+VS Q+YGD + H +VR R
Sbjct: 361 SSCQTD--FEEALKKRGLEMAEQEGDGNCLFRAVSLQVYGDANNHREVRRR 409 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig51079.12404.1 >prot_H-paniculata_contig51079.12404.1 ID=prot_H-paniculata_contig51079.12404.1|Name=mRNA_H-paniculata_contig51079.12404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp MPPVPLPRCVDPLTGGGSPSNSEDSLCSSDSVFREAMRRKGLPVVDVEPDback to top mRNA from alignment at H-paniculata_contig51079:725..952- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig51079.12404.1 ID=mRNA_H-paniculata_contig51079.12404.1|Name=mRNA_H-paniculata_contig51079.12404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at H-paniculata_contig51079:725..952- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig51079:725..952- >mRNA_H-paniculata_contig51079.12404.1 ID=mRNA_H-paniculata_contig51079.12404.1|Name=mRNA_H-paniculata_contig51079.12404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig51079:725..952- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |