mRNA_H-paniculata_contig51079.12404.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51079.12404.1
Unique NamemRNA_H-paniculata_contig51079.12404.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: D8LLK1_ECTSI (Deubiquitinating enzyme A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK1_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.900e-18
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 1
Query:   46 GGSPSNSEDSLCSSDSVFREAMRRKGLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVR 219
            GGS  +SE++  ++D  FREAMRR GL VVDVEPDGNCLFRSVSHQIYGD DRH  VR
Sbjct:  490 GGSGEDSEEA--AADRAFREAMRRTGLSVVDVEPDGNCLFRSVSHQIYGDADRHYPVR 545          
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: A0A6H5K5G6_9PHAE (Deubiquitinating enzyme A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G6_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.630e-17
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   46 GGSPSNSEDSLCSSDSVFREAMRRKGLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVR 219
            GGS  +SE++    +  FREAMRR GL VVDVEPDGNCLFRSVSHQIYGD DRH  VR
Sbjct:  992 GGSGEDSEEAAV--ERAFREAMRRTGLSVVDVEPDGNCLFRSVSHQIYGDADRHYPVR 1047          
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: A0A0R3UJJ3_MESCO (Deubiquitinating enzyme A n=2 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3UJJ3_MESCO)

HSP 1 Score: 63.5 bits (153), Expect = 5.260e-10
Identity = 34/83 (40.96%), Postives = 46/83 (55.42%), Query Frame = 1
Query:   16 LPRCVDPLTGGGSPSNSED-------------SLCSSDSVFREAMRRKGLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVRSR 225
            L  C+D +T  G+ +NSED             S    +S+ +    +KGL VV V  DG CLFRSVSHQ+YGD ++H  VR +
Sbjct:  154 LSDCLDDVTEAGAGNNSEDEYYNITDTATQNTSKAEDNSLEQLLKEKKGLKVVRVHGDGACLFRSVSHQVYGDEEKHEIVRKQ 236          
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: J6F765_TRIAS (OTU domain-containing protein n=2 Tax=Trichosporon asahii var. asahii TaxID=189963 RepID=J6F765_TRIAS)

HSP 1 Score: 62.8 bits (151), Expect = 9.910e-10
Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 1
Query:   13 PLPRCVDPLTGGGSPSNSEDSLCSSDSVFREAMRRKGLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVRSR 225
            P PR      G  +P + E     SD+V  E +R  GL +  V PDGNCLFR++S Q++GD  RH +VR R
Sbjct:  162 PRPRATRSRRGSATPVSLESIAAESDAVRAEVVRL-GLSIRKVAPDGNCLFRALSDQLWGDQSRHVEVRKR 231          
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: UPI001CF223B5 (uncharacterized protein LOC114947944 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF223B5)

HSP 1 Score: 62.4 bits (150), Expect = 1.360e-9
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   37 LTGGGSPSNSEDS--LC--SSDSVFREAMRRKGLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVR 219
            L  G + +N+  S  +C   S+SVF   +RR GL  ++V  +GNCLFR+++HQIYGD +RH ++R
Sbjct:  355 LNPGPTTTNTSSSQMMCREGSNSVFNSRLRRYGLRALEVGGNGNCLFRAIAHQIYGDANRHLEIR 419          
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: D8LCC5_ECTSI (Deubiquitinating enzyme A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCC5_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.870e-9
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:   76 LCSSDSVFREAMRRKGLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVRSR 225
            L S    +R A+  +GL VV VE DGNCLFRSVSHQ+YGD + H  VR+R
Sbjct:  323 LSSRYEHYRRALGSRGLRVVPVEGDGNCLFRSVSHQVYGDDNHHRLVRAR 372          
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: A0A7S2XFD6_9EUKA (Deubiquitinating enzyme A n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XFD6_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 3.080e-9
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   58 SNSEDSLCSSDSVFREAMRRK-GLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVR 219
            S  E      +  FREA++ K G  V+D++ DGNCLFRS +HQI+GD ++H QVR
Sbjct:   87 SEIEKKKAEEEKNFREALKSKYGYEVIDIDKDGNCLFRSFAHQIHGDKEKHEQVR 141          
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: UPI00077AAFB6 (OTU domain-containing protein 3-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AAFB6)

HSP 1 Score: 60.8 bits (146), Expect = 3.130e-9
Identity = 24/45 (53.33%), Postives = 35/45 (77.78%), Query Frame = 1
Query:   85 SDSVFREAMRRKGLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVR 219
            S+SVF   +RR GL  ++V  +GNCLFR+++HQIYGD +RH ++R
Sbjct:    7 SNSVFNSRLRRYGLRALEVGGNGNCLFRAIAHQIYGDANRHLEIR 51          
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: A0A5D6YD11_9STRA (Deubiquitinating enzyme A n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YD11_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 4.800e-9
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   97 FREAMRRKGLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVRS 222
            +REA+ R GL +  ++ DGNCLFRSVSHQ+YGD   HA VR+
Sbjct:  468 YREALERHGLRICPIDGDGNCLFRSVSHQVYGDDRHHAAVRA 509          
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Match: A0A7S4MQ37_9STRA (Deubiquitinating enzyme A n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MQ37_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 6.520e-9
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   73 SLCSSDSVFREAMRRKGLPVVDVEPDGNCLFRSVSHQIYGDVDRHAQVRSR 225
            S C +D  F EA++++GL + + E DGNCLFR+VS Q+YGD + H +VR R
Sbjct:  361 SSCQTD--FEEALKKRGLEMAEQEGDGNCLFRAVSLQVYGDANNHREVRRR 409          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51079.12404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLK1_ECTSI2.900e-1872.41Deubiquitinating enzyme A n=1 Tax=Ectocarpus silic... [more]
A0A6H5K5G6_9PHAE2.630e-1770.69Deubiquitinating enzyme A n=1 Tax=Ectocarpus sp. C... [more]
A0A0R3UJJ3_MESCO5.260e-1040.96Deubiquitinating enzyme A n=2 Tax=Mesocestoides co... [more]
J6F765_TRIAS9.910e-1043.66OTU domain-containing protein n=2 Tax=Trichosporon... [more]
UPI001CF223B51.360e-944.62uncharacterized protein LOC114947944 n=1 Tax=Acrop... [more]
D8LCC5_ECTSI1.870e-958.00Deubiquitinating enzyme A n=2 Tax=Ectocarpus TaxID... [more]
A0A7S2XFD6_9EUKA3.080e-949.09Deubiquitinating enzyme A n=1 Tax=Lotharella ocean... [more]
UPI00077AAFB63.130e-953.33OTU domain-containing protein 3-like n=1 Tax=Acrop... [more]
A0A5D6YD11_9STRA4.800e-959.52Deubiquitinating enzyme A n=1 Tax=Pythium brassicu... [more]
A0A7S4MQ37_9STRA6.520e-950.98Deubiquitinating enzyme A n=1 Tax=Odontella aurita... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51079contigH-paniculata_contig51079:725..952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog2880.D8LLK1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsKOG2605@1,KOG2605@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size228
Cds size228
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930497.7578344-CDS-H-paniculata_contig51079:724..9521622930497.7578344-CDS-H-paniculata_contig51079:724..952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51079 725..952 -
1691481319.317378-CDS-H-paniculata_contig51079:724..9521691481319.317378-CDS-H-paniculata_contig51079:724..952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51079 725..952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51079.12404.1prot_H-paniculata_contig51079.12404.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51079 725..952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51079.12404.1

>prot_H-paniculata_contig51079.12404.1 ID=prot_H-paniculata_contig51079.12404.1|Name=mRNA_H-paniculata_contig51079.12404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MPPVPLPRCVDPLTGGGSPSNSEDSLCSSDSVFREAMRRKGLPVVDVEPD
GNCLFRSVSHQIYGDVDRHAQVRSRF
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mRNA from alignment at H-paniculata_contig51079:725..952-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51079.12404.1 ID=mRNA_H-paniculata_contig51079.12404.1|Name=mRNA_H-paniculata_contig51079.12404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at H-paniculata_contig51079:725..952- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTCCTGTGCCTCTGCCACGGTGTGTGGACCCCCTCACAGGTGGTGG TAGCCCCAGCAACAGCGAGGATAGCTTGTGCTCGTCGGACTCGGTGTTTC GAGAAGCGATGCGGCGAAAGGGTTTGCCGGTGGTTGACGTCGAGCCCGAC GGGAACTGTCTCTTTCGTTCAGTCAGCCATCAGATCTACGGAGACGTGGA TCGTCACGCCCAGGTGCGTTCTCGGTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig51079:725..952-

>mRNA_H-paniculata_contig51079.12404.1 ID=mRNA_H-paniculata_contig51079.12404.1|Name=mRNA_H-paniculata_contig51079.12404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig51079:725..952- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTCCTGTGCCTCTGCCACGGTGTGTGGACCCCCTCACAGGTGGTGG
TAGCCCCAGCAACAGCGAGGATAGCTTGTGCTCGTCGGACTCGGTGTTTC
GAGAAGCGATGCGGCGAAAGGGTTTGCCGGTGGTTGACGTCGAGCCCGAC
GGGAACTGTCTCTTTCGTTCAGTCAGCCATCAGATCTACGGAGACGTGGA
TCGTCACGCCCAGGTGCGTTCTCGGTTTATGCCTCCTGTGCCTCTGCCAC
GGTGTGTGGACCCCCTCACAGGTGGTGGTAGCCCCAGCAACAGCGAGGAT
AGCTTGTGCTCGTCGGACTCGGTGTTTCGAGAAGCGATGCGGCGAAAGGG
TTTGCCGGTGGTTGACGTCGAGCCCGACGGGAACTGTCTCTTTCGTTCAG
TCAGCCATCAGATCTACGGAGACGTGGATCGTCACGCCCAGGTGCGTTCT
CGGTTT
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