mRNA_H-paniculata_contig51048.12402.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51048.12402.1
Unique NamemRNA_H-paniculata_contig51048.12402.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig51048.12402.1 vs. uniprot
Match: A0A8F0F757_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F757_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 9.350e-68
Identity = 97/112 (86.61%), Postives = 103/112 (91.96%), Query Frame = 1
Query:    1 NLMHSLESMHKFAQIYAKQTNTFFCLDPSITSVVITGCITGLANYKTKYGVPLCPFRNYHNEEDEIDLNYWICPCVAMRERKECHCKLFLTSDQKFVSQKQEIDIETIYKNL 336
            NL+ SLESMHKFAQ Y KQTNTFFCLDP+ITSVVITG    LANYK+KYGVPLCP RNYHNE+DEIDLNYWICPCVAMRERKECHCKLFLT DQKFVS+KQEIDIET+YKNL
Sbjct:   12 NLLQSLESMHKFAQNYTKQTNTFFCLDPAITSVVITG----LANYKSKYGVPLCPCRNYHNEKDEIDLNYWICPCVAMRERKECHCKLFLTPDQKFVSEKQEIDIETVYKNL 119          
BLAST of mRNA_H-paniculata_contig51048.12402.1 vs. uniprot
Match: A0A8F0FAQ0_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAQ0_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.070e-54
Identity = 79/112 (70.54%), Postives = 91/112 (81.25%), Query Frame = 1
Query:    1 NLMHSLESMHKFAQIYAKQTNTFFCLDPSITSVVITGCITGLANYKTKYGVPLCPFRNYHNEEDEIDLNYWICPCVAMRERKECHCKLFLTSDQKFVSQKQEIDIETIYKNL 336
            N    + +MHKFA+ YAKQTNTFFC DPSITS+VITG    LA YK KYGVPLCP RNY+NEE EI+LNYWICPCVAMRERKECHCKLF+  D ++VS+ Q+IDI+ IY NL
Sbjct:    8 NFYDCVNAMHKFAETYAKQTNTFFCFDPSITSIVITG----LATYKDKYGVPLCPCRNYYNEEAEIELNYWICPCVAMRERKECHCKLFINPDDEYVSENQKIDIDIIYNNL 115          
BLAST of mRNA_H-paniculata_contig51048.12402.1 vs. uniprot
Match: A0A2I4Q2F8_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2F8_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 1.190e-51
Identity = 75/112 (66.96%), Postives = 90/112 (80.36%), Query Frame = 1
Query:    1 NLMHSLESMHKFAQIYAKQTNTFFCLDPSITSVVITGCITGLANYKTKYGVPLCPFRNYHNEEDEIDLNYWICPCVAMRERKECHCKLFLTSDQKFVSQKQEIDIETIYKNL 336
            N+ +S+ES+ +FA+IY K+TNTFFC DPSIT++V+TG    L  +K KYGVPLCP RNY NEE E+DLNYWICPCVAMRERKECHCKLFLT D ++ S+ Q IDI  IY NL
Sbjct:    8 NISNSVESIQRFAEIYTKRTNTFFCFDPSITAIVLTG----LVRHKEKYGVPLCPCRNYFNEEAEVDLNYWICPCVAMRERKECHCKLFLTPDDEYSSKNQTIDINLIYDNL 115          
BLAST of mRNA_H-paniculata_contig51048.12402.1 vs. uniprot
Match: A0A0S0GLW6_COSCS (Ferredoxin-thioredoxin reductase, catalytic chain n=28 Tax=Laminariales TaxID=2886 RepID=A0A0S0GLW6_COSCS)

HSP 1 Score: 164 bits (414), Expect = 2.800e-50
Identity = 73/112 (65.18%), Postives = 90/112 (80.36%), Query Frame = 1
Query:    1 NLMHSLESMHKFAQIYAKQTNTFFCLDPSITSVVITGCITGLANYKTKYGVPLCPFRNYHNEEDEIDLNYWICPCVAMRERKECHCKLFLTSDQKFVSQKQEIDIETIYKNL 336
            N  + L+ MH FA+IYAKQTNTFFCLDPSITSV+ITG    LA YK +YGVPLCP RN+ +E+ EI+LNYW+CPCV+MRERKECHCKLF+  +    S+ Q+I ++TIYKNL
Sbjct:    8 NFYNRLKEMHNFAEIYAKQTNTFFCLDPSITSVIITG----LATYKDQYGVPLCPCRNFRSEKAEIELNYWVCPCVSMRERKECHCKLFVQPNDSSASETQKISLDTIYKNL 115          
BLAST of mRNA_H-paniculata_contig51048.12402.1 vs. uniprot
Match: A0A2R4QPY4_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPY4_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 3.980e-50
Identity = 72/108 (66.67%), Postives = 89/108 (82.41%), Query Frame = 1
Query:   13 SLESMHKFAQIYAKQTNTFFCLDPSITSVVITGCITGLANYKTKYGVPLCPFRNYHNEEDEIDLNYWICPCVAMRERKECHCKLFLTSDQKFVSQKQEIDIETIYKNL 336
            S+++M  FA+ YAKQTNTFF +DPSITS++ITG    LANYK +Y VPLCP RNYHNEE EI+LNYWICPCV+MRERKECHC+LF+   + + SQ Q+I ++TIYKNL
Sbjct:   12 SIKAMQHFAETYAKQTNTFFSIDPSITSIIITG----LANYKDRYKVPLCPCRNYHNEEAEIELNYWICPCVSMRERKECHCRLFVQPTESYASQSQKISLDTIYKNL 115          
BLAST of mRNA_H-paniculata_contig51048.12402.1 vs. uniprot
Match: A0A141BSI2_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSI2_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.680e-48
Identity = 69/107 (64.49%), Postives = 88/107 (82.24%), Query Frame = 1
Query:   16 LESMHKFAQIYAKQTNTFFCLDPSITSVVITGCITGLANYKTKYGVPLCPFRNYHNEEDEIDLNYWICPCVAMRERKECHCKLFLTSDQKFVSQKQEIDIETIYKNL 336
            +++M +FA+ YAKQTNTFF LDPSITS++ITG    LA YK ++ VPLCP RNYHNEE EI+LNYWICPC++MRERKECHCKLF+   + + S+ Q+ID++TIY NL
Sbjct:   13 IKAMQQFAETYAKQTNTFFSLDPSITSIIITG----LATYKDRHKVPLCPCRNYHNEEAEIELNYWICPCISMRERKECHCKLFVQPTESYASKSQKIDLDTIYNNL 115          
BLAST of mRNA_H-paniculata_contig51048.12402.1 vs. uniprot
Match: A0A8F0JXX6_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0JXX6_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.680e-48
Identity = 71/107 (66.36%), Postives = 87/107 (81.31%), Query Frame = 1
Query:   16 LESMHKFAQIYAKQTNTFFCLDPSITSVVITGCITGLANYKTKYGVPLCPFRNYHNEEDEIDLNYWICPCVAMRERKECHCKLFLTSDQKFVSQKQEIDIETIYKNL 336
            L+ MH FAQIYAKQTNTFFCLDPSITSV+ITG    LA YK K+GVPLCP RN+ +E+ EI+LNYW+CPCV+MRERKECHCKLF+  +    S+ Q+I ++TIY+ L
Sbjct:   13 LKEMHTFAQIYAKQTNTFFCLDPSITSVIITG----LATYKDKHGVPLCPCRNFRSEKAEIELNYWVCPCVSMRERKECHCKLFVQPNDSSASKSQKISLDTIYETL 115          
BLAST of mRNA_H-paniculata_contig51048.12402.1 vs. uniprot
Match: A0A8E6D4Y1_9PHAE (Ferredoxin-thioredoxin reductase beta subunit n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D4Y1_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 3.230e-48
Identity = 71/108 (65.74%), Postives = 86/108 (79.63%), Query Frame = 1
Query:   13 SLESMHKFAQIYAKQTNTFFCLDPSITSVVITGCITGLANYKTKYGVPLCPFRNYHNEEDEIDLNYWICPCVAMRERKECHCKLFLTSDQKFVSQKQEIDIETIYKNL 336
            SL++MHKFA+ YAK+TNTFFC+DPS+T VVI G    L+ YK KYG+PLCP RNY NEE E+D  YW+CPCVAMRER+ECHCKLFLTSD +  S  QEID++ + K L
Sbjct:   18 SLKAMHKFAETYAKKTNTFFCVDPSVTCVVIKG----LSVYKEKYGLPLCPCRNYENEEAELDSTYWLCPCVAMRERRECHCKLFLTSDDREASHNQEIDLQGVLKTL 121          
BLAST of mRNA_H-paniculata_contig51048.12402.1 vs. uniprot
Match: A0A1I9LVX2_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX2_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 5.620e-46
Identity = 68/107 (63.55%), Postives = 84/107 (78.50%), Query Frame = 1
Query:   16 LESMHKFAQIYAKQTNTFFCLDPSITSVVITGCITGLANYKTKYGVPLCPFRNYHNEEDEIDLNYWICPCVAMRERKECHCKLFLTSDQKFVSQKQEIDIETIYKNL 336
            L+ MH FA++YAK+TNTFFCLDPSITSV+I G    LA+YK KY +PLCP RN+ +E  EI+LN+WICPCVAMRERKECHCKLF+  +    SQ Q+I + T+Y NL
Sbjct:   21 LKEMHNFAELYAKKTNTFFCLDPSITSVIIAG----LADYKNKYKLPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPEDSEASQTQKISLSTVYNNL 123          
BLAST of mRNA_H-paniculata_contig51048.12402.1 vs. uniprot
Match: A0A6B7EW12_9PHAE (Ferredoxin:thioredoxin reductase n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EW12_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 6.340e-45
Identity = 66/107 (61.68%), Postives = 84/107 (78.50%), Query Frame = 1
Query:   16 LESMHKFAQIYAKQTNTFFCLDPSITSVVITGCITGLANYKTKYGVPLCPFRNYHNEEDEIDLNYWICPCVAMRERKECHCKLFLTSDQKFVSQKQEIDIETIYKNL 336
            ++ MH F+++YA++TNTFFCLDPSITSV+I G    LA+YK KY +PLCP RN+ +E  EI+LN+WICPCVAMRERKECHCKLF+  D    SQ Q+I + T+Y NL
Sbjct:   20 IKEMHTFSELYAQKTNTFFCLDPSITSVIIAG----LADYKEKYALPLCPCRNFRSERVEIELNFWICPCVAMRERKECHCKLFVRPDDSNASQTQKIPLSTVYHNL 122          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51048.12402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F757_9PHAE9.350e-6886.61Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A8F0FAQ0_9PHAE1.070e-5470.54Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A2I4Q2F8_9PHAE1.190e-5166.96Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A0S0GLW6_COSCS2.800e-5065.18Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A2R4QPY4_9PHAE3.980e-5066.67Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A141BSI2_9PHAE2.680e-4864.49Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A8F0JXX6_9PHAE2.680e-4866.36Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A8E6D4Y1_9PHAE3.230e-4865.74Ferredoxin-thioredoxin reductase beta subunit n=1 ... [more]
A0A1I9LVX2_9PHAE5.620e-4663.55Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A6B7EW12_9PHAE6.340e-4561.68Ferredoxin:thioredoxin reductase n=1 Tax=Cladosiph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51048contigH-paniculata_contig51048:875..1213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue1.3e-33
Seed eggNOG ortholog2880.D1J7D0
Preferred nameFtrB
KEGG koko:K17892
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0016491,GO:0016730,GO:0022900,GO:0030385,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114
EggNOG free text desc.ferredoxin:thioredoxin reductase activity
EggNOG OGs2RZRI@2759,COG4802@1
EC1.8.7.2
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size339
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930497.5739748-CDS-H-paniculata_contig51048:874..12071622930497.5739748-CDS-H-paniculata_contig51048:874..1207Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51048 875..1207 -
1691481319.2039328-CDS-H-paniculata_contig51048:874..12071691481319.2039328-CDS-H-paniculata_contig51048:874..1207Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51048 875..1207 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930497.5865507-UTR-H-paniculata_contig51048:1207..12131622930497.5865507-UTR-H-paniculata_contig51048:1207..1213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51048 1208..1213 -
1691481319.2169728-UTR-H-paniculata_contig51048:1207..12131691481319.2169728-UTR-H-paniculata_contig51048:1207..1213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51048 1208..1213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51048.12402.1prot_H-paniculata_contig51048.12402.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51048 875..1207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51048.12402.1

>prot_H-paniculata_contig51048.12402.1 ID=prot_H-paniculata_contig51048.12402.1|Name=mRNA_H-paniculata_contig51048.12402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MHSLESMHKFAQIYAKQTNTFFCLDPSITSVVITGCITGLANYKTKYGVP
LCPFRNYHNEEDEIDLNYWICPCVAMRERKECHCKLFLTSDQKFVSQKQE
IDIETIYKNL*
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mRNA from alignment at H-paniculata_contig51048:875..1213-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51048.12402.1 ID=mRNA_H-paniculata_contig51048.12402.1|Name=mRNA_H-paniculata_contig51048.12402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig51048:875..1213- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATTTAATGCATTCATTAGAATCTATGCATAAATTTGCACAAATTTATGC AAAACAAACAAATACATTTTTTTGCTTAGATCCTTCTATAACATCGGTTG TTATAACAGGTTGTATTACAGGGTTAGCTAATTATAAAACTAAATATGGT GTTCCTTTATGTCCTTTCAGAAATTATCATAATGAGGAAGATGAAATTGA TCTGAATTATTGGATTTGTCCTTGTGTGGCAATGCGAGAGCGAAAAGAAT GTCATTGTAAATTGTTTTTAACATCTGATCAAAAATTCGTGTCACAAAAA CAAGAAATTGATATAGAAACAATTTATAAAAATTTATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig51048:875..1213-

>mRNA_H-paniculata_contig51048.12402.1 ID=mRNA_H-paniculata_contig51048.12402.1|Name=mRNA_H-paniculata_contig51048.12402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig51048:875..1213- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATTCATTAGAATCTATGCATAAATTTGCACAAATTTATGCAAAACA
AACAAATACATTTTTTTGCTTAGATCCTTCTATAACATCGGTTGTTATAA
CAGGTTGTATTACAGGGTTAGCTAATTATAAAACTAAATATGGTGTTCCT
TTATGTCCTTTCAGAAATTATCATAATGAGGAAGATGAAATTGATCTGAA
TTATTGGATTTGTCCTTGTGTGGCAATGCGAGAGCGAAAAGAATGTCATT
GTAAATTGTTTTTAACATCTGATCAAAAATTCGTGTCACAAAAACAAGAA
ATTGATATAGAAACAATTTATAAAAATTTATAAATGCATTCATTAGAATC
TATGCATAAATTTGCACAAATTTATGCAAAACAAACAAATACATTTTTTT
GCTTAGATCCTTCTATAACATCGGTTGTTATAACAGGTTGTATTACAGGG
TTAGCTAATTATAAAACTAAATATGGTGTTCCTTTATGTCCTTTCAGAAA
TTATCATAATGAGGAAGATGAAATTGATCTGAATTATTGGATTTGTCCTT
GTGTGGCAATGCGAGAGCGAAAAGAATGTCATTGTAAATTGTTTTTAACA
TCTGATCAAAAATTCGTGTCACAAAAACAAGAAATTGATATAGAAACAAT
TTATAAAAATTTATAA
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