prot_H-paniculata_contig51043.12401.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig51043.12401.1
Unique Nameprot_H-paniculata_contig51043.12401.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length117
Homology
BLAST of mRNA_H-paniculata_contig51043.12401.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 6.990e-27
Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = 0
Query:   25 FGTATRDDEGDYWVQHRGERVLWVPPRARQLHVRLLVCAHMGKACHRGVEATLNRLRRYCVWTTMEEDAKDFIRQCLYCADYKTGATVPRP 115
             G    DDEG + V   G +VLW+P  AR + +RL++CAHM +A HRGV AT++RLR YC W+TM+ D K+F++QCL+C D K+G  VPRP
Sbjct:  384 LGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRP 474          
BLAST of mRNA_H-paniculata_contig51043.12401.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 7.440e-27
Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = 0
Query:   25 FGTATRDDEGDYWVQHRGERVLWVPPRARQLHVRLLVCAHMGKACHRGVEATLNRLRRYCVWTTMEEDAKDFIRQCLYCADYKTGATVPRP 115
             G    DDEG + V   G +VLW+P  AR + +RL++CAHM +A HRGV AT++RLR YC W+TM+ D K+F++QCL+C D K+G  VPRP
Sbjct: 1160 LGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRP 1250          
BLAST of mRNA_H-paniculata_contig51043.12401.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 8.940e-26
Identity = 60/123 (48.78%), Postives = 73/123 (59.35%), Query Frame = 0
Query:    1 MPTKKEVVTSQAEAKEELTKAAAE-------FGTATRDDEGDYWVQHRGERVLWVPPRARQLHVRLLVCAHMGKACHRGVEATLNRLRRYCVWTTMEEDAKDFIRQCLYCADYKTGATVPRPL 116
            MP+K+ V  +Q  A+ +L   A          GTAT D EG + V   G  VLW+P +A  L VRL+VCAHM +A HRG  ATL RL  YC W  MEE   DF++QCL+C D K G  VPRPL
Sbjct: 1231 MPSKQVVRDAQQAARSKLGALAGPASSFSTAVGTATLDAEGLFRVGMNGRDVLWIPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPL 1353          
BLAST of mRNA_H-paniculata_contig51043.12401.1 vs. uniprot
Match: A0A6G0MGG6_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MGG6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.520e-7
Identity = 27/69 (39.13%), Postives = 38/69 (55.07%), Query Frame = 0
Query:   47 WVPPRARQLHVRLLVCAHMGKACHRGVEATLNRLRRYCVWTTMEEDAKDFIRQCLYCADYKTGATVPRP 115
            W+P +A  L +RL++ AH G   HRGV A + +L R+     +  +A+ F   CL C   K G  VPRP
Sbjct:  403 WIPEKADDLLLRLMIVAHCGAQGHRGVNAMVQQLERFFDIPNVHIEARAFCADCLLCRHVKGGNIVPRP 471          
BLAST of mRNA_H-paniculata_contig51043.12401.1 vs. uniprot
Match: A0A6A3M4M3_9STRA (RT_RNaseH domain-containing protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3M4M3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.350e-6
Identity = 26/69 (37.68%), Postives = 37/69 (53.62%), Query Frame = 0
Query:   47 WVPPRARQLHVRLLVCAHMGKACHRGVEATLNRLRRYCVWTTMEEDAKDFIRQCLYCADYKTGATVPRP 115
            W+P +A  L +RL++ AH G   HRGV A + +L R+     +   ++ F   CL C   K G  VPRP
Sbjct:  164 WIPEKADDLLLRLMIVAHCGAQGHRGVNAMVQQLERFFDIPNVHIKSRAFCADCLLCRHVKGGNIVPRP 232          
BLAST of mRNA_H-paniculata_contig51043.12401.1 vs. uniprot
Match: A0A6A4FIQ4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FIQ4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.650e-6
Identity = 26/69 (37.68%), Postives = 37/69 (53.62%), Query Frame = 0
Query:   47 WVPPRARQLHVRLLVCAHMGKACHRGVEATLNRLRRYCVWTTMEEDAKDFIRQCLYCADYKTGATVPRP 115
            W+P +A  L +RL++ AH G   HRGV A + +L R+     +   ++ F   CL C   K G  VPRP
Sbjct:  164 WIPEKADDLLLRLMIVAHCGAQGHRGVNAMVQQLERFFDIPNVHIKSRAFCADCLLCRHVKGGNIVPRP 232          
BLAST of mRNA_H-paniculata_contig51043.12401.1 vs. uniprot
Match: A0A225WBL6_9STRA (Integrase_H2C2 domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WBL6_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 5.580e-6
Identity = 25/68 (36.76%), Postives = 37/68 (54.41%), Query Frame = 0
Query:   37 WVQHR------GERVLWVPPRARQLHVRLLVCAHMGKACHRGVEATLNRLRRYCVWTTMEEDAKDFIR 98
            W + R      G++V W+PP A  L  R+ V  H G + HR   ATL  ++ +C W +ME D K F++
Sbjct:  114 WAEERSCYVIFGDKV-WIPPTAEDLMERIRVIGHAGGSGHRSQSATLQAIKAWCWWESMEADVKSFVK 180          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51043.12401.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JCX8_9PHAE6.990e-2752.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE7.440e-2752.75Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE8.940e-2648.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G0MGG6_9STRA2.520e-739.13Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]
A0A6A3M4M3_9STRA1.350e-637.68RT_RNaseH domain-containing protein (Fragment) n=1... [more]
A0A6A4FIQ4_9STRA1.650e-637.68Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
A0A225WBL6_9STRA5.580e-636.76Integrase_H2C2 domain-containing protein n=1 Tax=P... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.340.70coord: 6..107
e-value: 9.1E-11
score: 43.8
IPR041588Integrase zinc-binding domainPFAMPF17921Integrase_H2C2coord: 55..108
e-value: 2.2E-12
score: 46.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51043contigH-paniculata_contig51043:936..1286 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51043.12401.1mRNA_H-paniculata_contig51043.12401.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig51043 936..1286 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig51043.12401.1 ID=prot_H-paniculata_contig51043.12401.1|Name=mRNA_H-paniculata_contig51043.12401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MPTKKEVVTSQAEAKEELTKAAAEFGTATRDDEGDYWVQHRGERVLWVPP
RARQLHVRLLVCAHMGKACHRGVEATLNRLRRYCVWTTMEEDAKDFIRQC
LYCADYKTGATVPRPLA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041588Integrase_H2C2