mRNA_H-paniculata_contig51043.12401.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51043.12401.1
Unique NamemRNA_H-paniculata_contig51043.12401.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig51043.12401.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 6.990e-27
Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = 1 
Query:   73 FGTATRDDEGDYWVQHRGERVLWVPPRARQLHVRLLVCAHMGKACHRGVEATLNRLRRYCVWTTMEEDAKDFIRQCLYCADYKTGATVPRP 345
             G    DDEG + V   G +VLW+P  AR + +RL++CAHM +A HRGV AT++RLR YC W+TM+ D K+F++QCL+C D K+G  VPRP
Sbjct:  384 LGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRP 474
[Close]
BLAST of mRNA_H-paniculata_contig51043.12401.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 7.440e-27
Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = 1 
Query:   73 FGTATRDDEGDYWVQHRGERVLWVPPRARQLHVRLLVCAHMGKACHRGVEATLNRLRRYCVWTTMEEDAKDFIRQCLYCADYKTGATVPRP 345
             G    DDEG + V   G +VLW+P  AR + +RL++CAHM +A HRGV AT++RLR YC W+TM+ D K+F++QCL+C D K+G  VPRP
Sbjct: 1160 LGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRP 1250
[Close]
BLAST of mRNA_H-paniculata_contig51043.12401.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 8.940e-26
Identity = 60/123 (48.78%), Postives = 73/123 (59.35%), Query Frame = 1 
Query:    1 MPTKKEVVTSQAEAKEELTKAAAE-------FGTATRDDEGDYWVQHRGERVLWVPPRARQLHVRLLVCAHMGKACHRGVEATLNRLRRYCVWTTMEEDAKDFIRQCLYCADYKTGATVPRPL 348
            MP+K+ V  +Q  A+ +L   A          GTAT D EG + V   G  VLW+P +A  L VRL+VCAHM +A HRG  ATL RL  YC W  MEE   DF++QCL+C D K G  VPRPL
Sbjct: 1231 MPSKQVVRDAQQAARSKLGALAGPASSFSTAVGTATLDAEGLFRVGMNGRDVLWIPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPL 1353
[Close]
BLAST of mRNA_H-paniculata_contig51043.12401.1 vs. uniprot
Match: A0A6G0MGG6_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MGG6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.520e-7
Identity = 27/69 (39.13%), Postives = 38/69 (55.07%), Query Frame = 1 
Query:  139 WVPPRARQLHVRLLVCAHMGKACHRGVEATLNRLRRYCVWTTMEEDAKDFIRQCLYCADYKTGATVPRP 345
            W+P +A  L +RL++ AH G   HRGV A + +L R+     +  +A+ F   CL C   K G  VPRP
Sbjct:  403 WIPEKADDLLLRLMIVAHCGAQGHRGVNAMVQQLERFFDIPNVHIEARAFCADCLLCRHVKGGNIVPRP 471
[Close]
BLAST of mRNA_H-paniculata_contig51043.12401.1 vs. uniprot
Match: A0A6A3M4M3_9STRA (RT_RNaseH domain-containing protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3M4M3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.350e-6
Identity = 26/69 (37.68%), Postives = 37/69 (53.62%), Query Frame = 1 
Query:  139 WVPPRARQLHVRLLVCAHMGKACHRGVEATLNRLRRYCVWTTMEEDAKDFIRQCLYCADYKTGATVPRP 345
            W+P +A  L +RL++ AH G   HRGV A + +L R+     +   ++ F   CL C   K G  VPRP
Sbjct:  164 WIPEKADDLLLRLMIVAHCGAQGHRGVNAMVQQLERFFDIPNVHIKSRAFCADCLLCRHVKGGNIVPRP 232
[Close]
BLAST of mRNA_H-paniculata_contig51043.12401.1 vs. uniprot
Match: A0A6A4FIQ4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FIQ4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.650e-6
Identity = 26/69 (37.68%), Postives = 37/69 (53.62%), Query Frame = 1 
Query:  139 WVPPRARQLHVRLLVCAHMGKACHRGVEATLNRLRRYCVWTTMEEDAKDFIRQCLYCADYKTGATVPRP 345
            W+P +A  L +RL++ AH G   HRGV A + +L R+     +   ++ F   CL C   K G  VPRP
Sbjct:  164 WIPEKADDLLLRLMIVAHCGAQGHRGVNAMVQQLERFFDIPNVHIKSRAFCADCLLCRHVKGGNIVPRP 232
[Close]
BLAST of mRNA_H-paniculata_contig51043.12401.1 vs. uniprot
Match: A0A225WBL6_9STRA (Integrase_H2C2 domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WBL6_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 5.580e-6
Identity = 25/68 (36.76%), Postives = 37/68 (54.41%), Query Frame = 1 
Query:  109 WVQHR------GERVLWVPPRARQLHVRLLVCAHMGKACHRGVEATLNRLRRYCVWTTMEEDAKDFIR 294
            W + R      G++V W+PP A  L  R+ V  H G + HR   ATL  ++ +C W +ME D K F++
Sbjct:  114 WAEERSCYVIFGDKV-WIPPTAEDLMERIRVIGHAGGSGHRSQSATLQAIKAWCWWESMEADVKSFVK 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51043.12401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JCX8_9PHAE6.990e-2752.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE7.440e-2752.75Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE8.940e-2648.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G0MGG6_9STRA2.520e-739.13Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]
A0A6A3M4M3_9STRA1.350e-637.68RT_RNaseH domain-containing protein (Fragment) n=1... [more]
A0A6A4FIQ4_9STRA1.650e-637.68Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
A0A225WBL6_9STRA5.580e-636.76Integrase_H2C2 domain-containing protein n=1 Tax=P... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51043contigH-paniculata_contig51043:936..1286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue2.3e-09
Seed eggNOG ortholog653948.CCA22183
Hectar predicted targeting categoryother localisation
EggNOG OGs2EN9U@1,2SRS7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size352
Cds size351
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930497.5327473-CDS-H-paniculata_contig51043:935..12861622930497.5327473-CDS-H-paniculata_contig51043:935..1286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51043 936..1286 +
1691481319.1927843-CDS-H-paniculata_contig51043:935..12861691481319.1927843-CDS-H-paniculata_contig51043:935..1286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51043 936..1286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51043.12401.1prot_H-paniculata_contig51043.12401.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51043 936..1286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51043.12401.1

>prot_H-paniculata_contig51043.12401.1 ID=prot_H-paniculata_contig51043.12401.1|Name=mRNA_H-paniculata_contig51043.12401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MPTKKEVVTSQAEAKEELTKAAAEFGTATRDDEGDYWVQHRGERVLWVPP
RARQLHVRLLVCAHMGKACHRGVEATLNRLRRYCVWTTMEEDAKDFIRQC
LYCADYKTGATVPRPLA
back to top

mRNA from alignment at H-paniculata_contig51043:936..1286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51043.12401.1 ID=mRNA_H-paniculata_contig51043.12401.1|Name=mRNA_H-paniculata_contig51043.12401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig51043:936..1286+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGACGAAAAAGGAAGTGGTCACGAGCCAGGCGGAGGCCAAGGAGGA
GCTCACCAAGGCGGCCGCCGAATTCGGGACGGCAACACGTGATGATGAAG
GAGACTATTGGGTGCAGCATCGCGGGGAGCGGGTCCTGTGGGTGCCTCCA
CGCGCGCGTCAGCTGCATGTGCGGCTGCTGGTGTGTGCGCATATGGGTAA
GGCGTGCCATAGAGGCGTAGAGGCTACGCTGAATCGGCTGCGGCGGTACT
GCGTTTGGACCACAATGGAGGAGGATGCGAAGGACTTCATCCGCCAGTGT
CTCTACTGTGCGGATTACAAGACAGGAGCGACAGTGCCGCGCCCGTTGGC
A
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig51043:936..1286+

>mRNA_H-paniculata_contig51043.12401.1 ID=mRNA_H-paniculata_contig51043.12401.1|Name=mRNA_H-paniculata_contig51043.12401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig51043:936..1286+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGACGAAAAAGGAAGTGGTCACGAGCCAGGCGGAGGCCAAGGAGGA
GCTCACCAAGGCGGCCGCCGAATTCGGGACGGCAACACGTGATGATGAAG
GAGACTATTGGGTGCAGCATCGCGGGGAGCGGGTCCTGTGGGTGCCTCCA
CGCGCGCGTCAGCTGCATGTGCGGCTGCTGGTGTGTGCGCATATGGGTAA
GGCGTGCCATAGAGGCGTAGAGGCTACGCTGAATCGGCTGCGGCGGTACT
GCGTTTGGACCACAATGGAGGAGGATGCGAAGGACTTCATCCGCCAGTGT
CTCTACTGTGCGGATTACAAGACAGGAGCGACAGTGCCGCGCCCGTTGGC
AATGCCGACGAAAAAGGAAGTGGTCACGAGCCAGGCGGAGGCCAAGGAGG
AGCTCACCAAGGCGGCCGCCGAATTCGGGACGGCAACACGTGATGATGAA
GGAGACTATTGGGTGCAGCATCGCGGGGAGCGGGTCCTGTGGGTGCCTCC
ACGCGCGCGTCAGCTGCATGTGCGGCTGCTGGTGTGTGCGCATATGGGTA
AGGCGTGCCATAGAGGCGTAGAGGCTACGCTGAATCGGCTGCGGCGGTAC
TGCGTTTGGACCACAATGGAGGAGGATGCGAAGGACTTCATCCGCCAGTG
TCTCTACTGTGCGGATTACAAGACAGGAGCGACAGTGCCGCGCCCGTTGG
CA
back to top