prot_H-paniculata_contig5104.12399.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5104.12399.1
Unique Nameprot_H-paniculata_contig5104.12399.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length333
Homology
BLAST of mRNA_H-paniculata_contig5104.12399.1 vs. uniprot
Match: D7G6W6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W6_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 1.750e-70
Identity = 150/343 (43.73%), Postives = 196/343 (57.14%), Query Frame = 0
Query:    1 MHDLRRGVLASVVLCVPGVVLSFVPSSLPARWQHERAVGGLTRGLESPIESCASRALARTCCVRATGP-VDDHSIPQGH-------LTAEAPTSIAEDKGKTRSRWAKGQGTWAPRGKKGPAADKGNDPVGA-GGGVEVDQLMG-IKAPEVGGTFMSDDDAMRLEEAMDQGTQEEESSQPAVKVTKKRLKKYFVSDFEDSSWTVGIQWKSKPYEIYTTKVALKKDGSVVWLDKGQGSWSLRTRSRDLVFYRDFFWNWNGKRIYSAKLLNNTCDMYLEGVIKGWAPFLQLGIYGHFQAVRRGVTIDENTPRPPWEDRPV-PELDIPKSMGRRTNRAVIKSVPLD 332
            M DLR  + A+VV C  G V SF+P   PAR +        +RG+E P  S  SRA   +  + AT    + H++ +G         + + P + A          A+G    A   +   A  K  D   + G   E +++M  + A + GG     D+A  ++ A+          +P+ +VTK RLKKYF  DF+D++WTV IQW    YE+ TTKVALK DG VVWLDKG+GSW LRT+SRD+  YR+FF NW G RI+SAKLLNNTCDMYL GVIKGW PFL L   G +QAVRRG+T+DENTPRPPWE R V  E+ +P    R+ N  +   V LD
Sbjct:    1 MRDLRNRLRAAVVFCAAGPVASFLPLFSPARARAGLVGAPCSRGVE-PRRS-PSRAPVGSTQLEATAERPEGHALQEGQEEKASSSASVDTPPAAAPASPVVDRSSAEGGEEKAGLAQNVAAVAKETDATASVGQSAEEEEVMAELLAHQPGGQ----DEAQEVDAAL----------KPSKRVTK-RLKKYFPKDFQDTTWTVAIQWNHSKYEVKTTKVALKADGEVVWLDKGKGSWILRTKSRDISIYRNFFLNWAGMRIFSAKLLNNTCDMYLSGVIKGWQPFLPLSKMGTWQAVRRGITLDENTPRPPWESREVVKEVTMPDGRKRK-NTPIEIDVDLD 325          
BLAST of mRNA_H-paniculata_contig5104.12399.1 vs. uniprot
Match: A0A835YQD3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQD3_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.000e-36
Identity = 70/136 (51.47%), Postives = 91/136 (66.91%), Query Frame = 0
Query:  177 KRLKKYFVSDFEDSSWTVGIQW--KSKPYEIYTTKVALKKDGSVVWLDKGQGSWSLRTRSRDLVFYRDFFWNWNGKRIYSAKLLNNTCDMYLEGVIKGWAPFLQLGIYGHFQAVRRGVTIDENTPRPPWEDRPVPE 310
            +R+KK+F  DF +S+W V I W  + KP     TKV L+ DG VVWLDKG+GSW L T+SR L FYRDFF  W GKRI+S +LL+N  + YLEG +KGW P+  L   G +QA+R GV ++++ P P W  R  PE
Sbjct:  172 RRVKKFFARDFANSTWAVAILWGARRKPQ---MTKVFLRDDGKVVWLDKGKGSWRLDTKSRSLGFYRDFFLGWKGKRIFSTRLLDNCNEHYLEGEVKGWGPWFPLKWMGQWQAIRLGVDLEKHGPAP-WLQREAPE 303          
BLAST of mRNA_H-paniculata_contig5104.12399.1 vs. uniprot
Match: A0A7S2BQ16_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQ16_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.130e-16
Identity = 56/174 (32.18%), Postives = 89/174 (51.15%), Query Frame = 0
Query:  128 VEVDQLMGIKAPEVGGTFMSDDDAMRLEEAMDQGTQEEESSQPAV--KVTKKRL--KKYFVSDFEDSSWTVGIQWKSKPYEIYTTKVALKKDGSVVWLDKG-QGSWSLRTRSRDLVFYRDFFWNWNGKRIYSAKLLNNTCDMYLEGVIKGWAPFLQLGIYGHFQAVRRGVTIDE 296
            V+  +      P V  T      ++ L +++  G +E  S+  AV  +V ++ +  K+YF    + S W VGI WK     I  T +  K++    W   G +G+W +    +   F RD+   WNGKRI+SA L +   ++YLEG+++GWAPF    + G +QA+R GV   E
Sbjct:   72 VDAPEEKADSPPSVNTTGEQGTSSLELSDSVSDGIEENASNLMAVSDEVVEEIITPKEYF----KGSEWKVGIMWKDNK-NIQETWIRCKEEFDCEWGTGGKEGTWDVD--GKIFTFTRDYVGGWNGKRIFSAPLRDRNSEVYLEGLVRGWAPFTPAEVMGQWQAIRLGVDRSE 238          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5104.12399.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6W6_ECTSI1.750e-7043.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YQD3_9STRA2.000e-3651.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2BQ16_9STRA4.130e-1632.18Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..332
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..22
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5104contigH-paniculata_contig5104:3753..8897 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5104.12399.1mRNA_H-paniculata_contig5104.12399.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5104 3700..9472 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5104.12399.1 ID=prot_H-paniculata_contig5104.12399.1|Name=mRNA_H-paniculata_contig5104.12399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=333bp
MHDLRRGVLASVVLCVPGVVLSFVPSSLPARWQHERAVGGLTRGLESPIE
SCASRALARTCCVRATGPVDDHSIPQGHLTAEAPTSIAEDKGKTRSRWAK
GQGTWAPRGKKGPAADKGNDPVGAGGGVEVDQLMGIKAPEVGGTFMSDDD
AMRLEEAMDQGTQEEESSQPAVKVTKKRLKKYFVSDFEDSSWTVGIQWKS
KPYEIYTTKVALKKDGSVVWLDKGQGSWSLRTRSRDLVFYRDFFWNWNGK
RIYSAKLLNNTCDMYLEGVIKGWAPFLQLGIYGHFQAVRRGVTIDENTPR
PPWEDRPVPELDIPKSMGRRTNRAVIKSVPLD*
back to top