mRNA_H-paniculata_contig5104.12398.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5104.12398.1 vs. uniprot
Match: A0A6H5L059_9PHAE (Protein pelota homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L059_9PHAE) HSP 1 Score: 163 bits (412), Expect = 8.990e-47 Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 1
Query: 1 MKVLKRQISTKDGDGFVQMKTEEAEDMWHAYNLIMAGDRVRTTTVRKVMNESSTGSMTSKRVRLSLTIAVERVDFDSSSCLLRLSGRNSAENPHVKV 291
MKVL+RQIS+KDGDGFVQMKTEEAEDMWHAYNLI GDRVRT+TV +NESSTGS TSKRVRLSLTIAVERVDFDS SCLLRLSGRNS ENPHVK+
Sbjct: 1 MKVLRRQISSKDGDGFVQMKTEEAEDMWHAYNLIADGDRVRTSTV---VNESSTGSTTSKRVRLSLTIAVERVDFDSDSCLLRLSGRNSEENPHVKI 94
BLAST of mRNA_H-paniculata_contig5104.12398.1 vs. uniprot
Match: A0A835Z3B0_9STRA (Protein pelota homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3B0_9STRA) HSP 1 Score: 134 bits (337), Expect = 1.040e-35 Identity = 65/97 (67.01%), Postives = 80/97 (82.47%), Query Frame = 1
Query: 1 MKVLKRQISTKDGDGFVQMKTEEAEDMWHAYNLIMAGDRVRTTTVRKVMNESSTGSMTSKRVRLSLTIAVERVDFDSSSCLLRLSGRNSAENPHVKV 291
MKV+ + + KDG G+++++ EE EDMWHAYNLI GDRVRTTTVRKV++ESSTGS +SKRVRL+LTI VER DFDS C+LRLSG+N EN HVK+
Sbjct: 1 MKVVAKHLE-KDGAGYIKLQAEETEDMWHAYNLIAVGDRVRTTTVRKVVSESSTGSTSSKRVRLNLTIGVERTDFDSEGCVLRLSGKNVEENAHVKI 96
BLAST of mRNA_H-paniculata_contig5104.12398.1 vs. uniprot
Match: A0A2D4BPZ5_PYTIN (mRNA surveillance protein pelota n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPZ5_PYTIN) HSP 1 Score: 121 bits (303), Expect = 3.610e-33 Identity = 57/97 (58.76%), Postives = 75/97 (77.32%), Query Frame = 1
Query: 1 MKVLKRQISTKDGDGFVQMKTEEAEDMWHAYNLIMAGDRVRTTTVRKVMNESSTGSMTSKRVRLSLTIAVERVDFDSSSCLLRLSGRNSAENPHVKV 291
MK+LK+QIS KDG G + ++ EE EDMWH YNLI GD V+TTT+RKV+ E TGS +S+RVRL+L I VE+V+FD C+LR+ G+NS EN HV++
Sbjct: 1 MKLLKKQISEKDGVGSIVLRAEEPEDMWHIYNLIHVGDSVKTTTIRKVVKEGVTGSTSSQRVRLTLQIEVEQVNFDPGQCVLRIKGKNSLENQHVRM 97
BLAST of mRNA_H-paniculata_contig5104.12398.1 vs. uniprot
Match: A0A397FB59_9STRA (eRF1_1 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FB59_9STRA) HSP 1 Score: 119 bits (299), Expect = 1.340e-32 Identity = 53/97 (54.64%), Postives = 75/97 (77.32%), Query Frame = 1
Query: 1 MKVLKRQISTKDGDGFVQMKTEEAEDMWHAYNLIMAGDRVRTTTVRKVMNESSTGSMTSKRVRLSLTIAVERVDFDSSSCLLRLSGRNSAENPHVKV 291
MK+LK+ IS KDG G V ++ EE EDMWH +NLI GD ++TTTVRKV+ E +TGS +S+R+R+SL + ++++DFD + CLLR+ G N ENPHV++
Sbjct: 1 MKLLKKNISEKDGTGSVSLRAEEPEDMWHVFNLIHKGDTLKTTTVRKVVKEGATGSTSSQRMRMSLALEIDKIDFDPAKCLLRIKGVNVEENPHVRM 97
BLAST of mRNA_H-paniculata_contig5104.12398.1 vs. uniprot
Match: A0A1B6FWD0_9HEMI (eRF1_1 domain-containing protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6FWD0_9HEMI) HSP 1 Score: 119 bits (297), Expect = 3.390e-32 Identity = 58/97 (59.79%), Postives = 75/97 (77.32%), Query Frame = 1
Query: 1 MKVLKRQISTKDGDGFVQMKTEEAEDMWHAYNLIMAGDRVRTTTVRKVMNESSTGSMTSKRVRLSLTIAVERVDFDSSSCLLRLSGRNSAENPHVKV 291
MK++ + + KDG+G V + EE+EDMWHAYNLI GD VR +T+RKV NESSTGS TS RVR +LTI+VE +DFD+ +C+LRL GRN EN +VK+
Sbjct: 1 MKLIYKNVD-KDGNGSVTLIPEESEDMWHAYNLISEGDSVRASTIRKVQNESSTGSSTSSRVRTTLTISVETIDFDTQACMLRLKGRNIEENQYVKM 96
BLAST of mRNA_H-paniculata_contig5104.12398.1 vs. uniprot
Match: A0A418AJ15_9STRA (eRF1_1 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AJ15_9STRA) HSP 1 Score: 120 bits (300), Expect = 1.570e-31 Identity = 55/97 (56.70%), Postives = 74/97 (76.29%), Query Frame = 1
Query: 1 MKVLKRQISTKDGDGFVQMKTEEAEDMWHAYNLIMAGDRVRTTTVRKVMNESSTGSMTSKRVRLSLTIAVERVDFDSSSCLLRLSGRNSAENPHVKV 291
MK+LKR IS KDG G V ++ EE EDMWH +NLI GD ++TTTVRKV+ E +TGS +S+R+R+SL + ++ +DFD + CLLR+ G N ENPHV+V
Sbjct: 1 MKLLKRNISEKDGTGSVTLRAEEPEDMWHVFNLIHKGDVLKTTTVRKVVKEGATGSTSSQRLRMSLALEIDHIDFDPAKCLLRIKGINVEENPHVRV 97
BLAST of mRNA_H-paniculata_contig5104.12398.1 vs. uniprot
Match: A0A146LH88_LYGHE (Protein pelota (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LH88_LYGHE) HSP 1 Score: 116 bits (290), Expect = 1.750e-31 Identity = 57/97 (58.76%), Postives = 74/97 (76.29%), Query Frame = 1
Query: 1 MKVLKRQISTKDGDGFVQMKTEEAEDMWHAYNLIMAGDRVRTTTVRKVMNESSTGSMTSKRVRLSLTIAVERVDFDSSSCLLRLSGRNSAENPHVKV 291
MK+L + + K+G+G V + EE EDMWHAYNLI GD VR+TT+RKV +ES+TGS TS RVR +LTI VE +DFD+ +C+LRL GRN EN +VK+
Sbjct: 1 MKLLYKNVD-KEGEGTVGLIAEEPEDMWHAYNLISKGDSVRSTTIRKVQSESATGSSTSSRVRTTLTICVENIDFDTQACVLRLKGRNVEENQYVKM 96
BLAST of mRNA_H-paniculata_contig5104.12398.1 vs. uniprot
Match: A0A2R7W4X8_ONCFA (eRF1_1 domain-containing protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7W4X8_ONCFA) HSP 1 Score: 118 bits (295), Expect = 2.940e-31 Identity = 58/97 (59.79%), Postives = 74/97 (76.29%), Query Frame = 1
Query: 1 MKVLKRQISTKDGDGFVQMKTEEAEDMWHAYNLIMAGDRVRTTTVRKVMNESSTGSMTSKRVRLSLTIAVERVDFDSSSCLLRLSGRNSAENPHVKV 291
MK++ + + KDG+G V + EE+EDMWHAYNLI GD VR +T+RKV NESSTGS TS RVR +LTI VE +DFD+ +C+LRL GRN EN +VK+
Sbjct: 1 MKLVYKNVD-KDGEGSVTLVPEESEDMWHAYNLISEGDSVRASTIRKVQNESSTGSSTSNRVRTTLTIRVEAIDFDTQACVLRLKGRNIEENQYVKM 96
BLAST of mRNA_H-paniculata_contig5104.12398.1 vs. uniprot
Match: A0A397ELU4_9STRA (Eukaryotic peptide chain release factor subunit 1 n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ELU4_9STRA) HSP 1 Score: 120 bits (302), Expect = 3.660e-31 Identity = 54/97 (55.67%), Postives = 75/97 (77.32%), Query Frame = 1
Query: 1 MKVLKRQISTKDGDGFVQMKTEEAEDMWHAYNLIMAGDRVRTTTVRKVMNESSTGSMTSKRVRLSLTIAVERVDFDSSSCLLRLSGRNSAENPHVKV 291
MK+LK+ IS KDG G V ++ EE EDMWH +NLI GD ++TTTVRKV+ E +TGS +S+R+R+SL + ++++DFD + CLLR+ G N ENPHV+V
Sbjct: 1 MKLLKKNISEKDGTGSVSLRAEEPEDMWHVFNLIHKGDTLKTTTVRKVVKEGATGSTSSQRMRMSLALEIDKIDFDPAKCLLRIKGVNVEENPHVRV 97
BLAST of mRNA_H-paniculata_contig5104.12398.1 vs. uniprot
Match: A0A1V9ZXG7_9STRA (Protein pelota homolog n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZXG7_9STRA) HSP 1 Score: 121 bits (304), Expect = 6.410e-31 Identity = 54/97 (55.67%), Postives = 77/97 (79.38%), Query Frame = 1
Query: 1 MKVLKRQISTKDGDGFVQMKTEEAEDMWHAYNLIMAGDRVRTTTVRKVMNESSTGSMTSKRVRLSLTIAVERVDFDSSSCLLRLSGRNSAENPHVKV 291
MK+LKR I+ KDG+G V ++ E+ EDMWH +NL+ GD V+TTTVRKV+ E +TGS TS+RVR++L++ +E +DFD + CLLR+ G+N ENPHV++
Sbjct: 1 MKLLKRNINEKDGNGSVVLRAEDPEDMWHVFNLMHKGDTVKTTTVRKVIKEGATGSTTSQRVRMTLSLQMEHIDFDPAKCLLRIRGKNVEENPHVRM 97 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5104.12398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5104.12398.1 >prot_H-paniculata_contig5104.12398.1 ID=prot_H-paniculata_contig5104.12398.1|Name=mRNA_H-paniculata_contig5104.12398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp MKVLKRQISTKDGDGFVQMKTEEAEDMWHAYNLIMAGDRVRTTTVRKVMNback to top mRNA from alignment at H-paniculata_contig5104:2362..3243- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5104.12398.1 ID=mRNA_H-paniculata_contig5104.12398.1|Name=mRNA_H-paniculata_contig5104.12398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=882bp|location=Sequence derived from alignment at H-paniculata_contig5104:2362..3243- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5104:2362..3243- >mRNA_H-paniculata_contig5104.12398.1 ID=mRNA_H-paniculata_contig5104.12398.1|Name=mRNA_H-paniculata_contig5104.12398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig5104:2362..3243- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |