mRNA_H-paniculata_contig51036.12397.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51036.12397.1
Unique NamemRNA_H-paniculata_contig51036.12397.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51036.12397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51036contigH-paniculata_contig51036:422..977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size556
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51036.12397.1prot_H-paniculata_contig51036.12397.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51036 443..793 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930496.970774-UTR-H-paniculata_contig51036:421..4421622930496.970774-UTR-H-paniculata_contig51036:421..442Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51036 422..442 +
1691481319.0022144-UTR-H-paniculata_contig51036:421..4421691481319.0022144-UTR-H-paniculata_contig51036:421..442Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51036 422..442 +
1622930497.0170135-UTR-H-paniculata_contig51036:793..9771622930497.0170135-UTR-H-paniculata_contig51036:793..977Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51036 794..977 +
1691481319.022581-UTR-H-paniculata_contig51036:793..9771691481319.022581-UTR-H-paniculata_contig51036:793..977Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51036 794..977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930496.9905028-CDS-H-paniculata_contig51036:442..7931622930496.9905028-CDS-H-paniculata_contig51036:442..793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51036 443..793 +
1691481319.0130074-CDS-H-paniculata_contig51036:442..7931691481319.0130074-CDS-H-paniculata_contig51036:442..793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51036 443..793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51036.12397.1

>prot_H-paniculata_contig51036.12397.1 ID=prot_H-paniculata_contig51036.12397.1|Name=mRNA_H-paniculata_contig51036.12397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MLRRTHCCRRRGDQGRSRRFDGMEADPERVRNAQKAWITLITTSKAWRKL
QKHYRASGLKEKSRPLREFDSLRMEPGEESTKFLVRVDPVANGLELLGRT
VDEDNRNLAIVNRLSP*
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mRNA from alignment at H-paniculata_contig51036:422..977+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51036.12397.1 ID=mRNA_H-paniculata_contig51036.12397.1|Name=mRNA_H-paniculata_contig51036.12397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=556bp|location=Sequence derived from alignment at H-paniculata_contig51036:422..977+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCACAAGCCAGGGCCCTTGGATGCTCAGACGAACTCACTGCTGCAGAAG
GCGAGGAGATCAAGGTCGGAGCCGAAGATTTGATGGCATGGAAGCAGACC
CCGAGAGGGTGCGGAACGCGCAGAAGGCATGGATCACGCTAATCACGACC
TCAAAGGCGTGGAGGAAGCTCCAAAAGCACTACCGCGCTAGTGGCCTTAA
AGAGAAGTCACGTCCGCTGCGCGAATTTGACTCCCTCAGGATGGAGCCCG
GGGAAGAATCCACAAAATTCCTTGTGCGGGTGGACCCGGTCGCCAATGGC
TTGGAGCTGCTTGGGAGGACCGTCGATGAAGATAACAGGAATCTGGCGAT
AGTGAACAGGTTATCACCGTAGTATGACATTAAGAGGAGATTGATCGAGA
GCAGCGATGACACGCCAAATAGAGCGCGCATCGAAACAATAATCGCAAAC
CAGTATAACAGGCTTGAGCAGCAGAAAGCCGAGACGGGGGCAAAGGCACT
GGCGGTCACGATAAAATGTACAGCGGAAACTTGCCAGTTGTGCCACAAGC
TTGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig51036:422..977+

>mRNA_H-paniculata_contig51036.12397.1 ID=mRNA_H-paniculata_contig51036.12397.1|Name=mRNA_H-paniculata_contig51036.12397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig51036:422..977+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCAGACGAACTCACTGCTGCAGAAGGCGAGGAGATCAAGGTCGGAG
CCGAAGATTTGATGGCATGGAAGCAGACCCCGAGAGGGTGCGGAACGCGC
AGAAGGCATGGATCACGCTAATCACGACCTCAAAGGCGTGGAGGAAGCTC
CAAAAGCACTACCGCGCTAGTGGCCTTAAAGAGAAGTCACGTCCGCTGCG
CGAATTTGACTCCCTCAGGATGGAGCCCGGGGAAGAATCCACAAAATTCC
TTGTGCGGGTGGACCCGGTCGCCAATGGCTTGGAGCTGCTTGGGAGGACC
GTCGATGAAGATAACAGGAATCTGGCGATAGTGAACAGGTTATCACCGTA
GATGCTCAGACGAACTCACTGCTGCAGAAGGCGAGGAGATCAAGGTCGGA
GCCGAAGATTTGATGGCATGGAAGCAGACCCCGAGAGGGTGCGGAACGCG
CAGAAGGCATGGATCACGCTAATCACGACCTCAAAGGCGTGGAGGAAGCT
CCAAAAGCACTACCGCGCTAGTGGCCTTAAAGAGAAGTCACGTCCGCTGC
GCGAATTTGACTCCCTCAGGATGGAGCCCGGGGAAGAATCCACAAAATTC
CTTGTGCGGGTGGACCCGGTCGCCAATGGCTTGGAGCTGCTTGGGAGGAC
CGTCGATGAAGATAACAGGAATCTGGCGATAGTGAACAGGTTATCACCGT
AG
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