mRNA_H-paniculata_contig51027.12395.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51027.12395.1
Unique NamemRNA_H-paniculata_contig51027.12395.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51027.12395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51027contigH-paniculata_contig51027:469..787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930496.8123016-UTR-H-paniculata_contig51027:468..4871622930496.8123016-UTR-H-paniculata_contig51027:468..487Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51027 469..487 +
1691481318.926128-UTR-H-paniculata_contig51027:468..4871691481318.926128-UTR-H-paniculata_contig51027:468..487Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51027 469..487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930496.8318381-CDS-H-paniculata_contig51027:487..7871622930496.8318381-CDS-H-paniculata_contig51027:487..787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51027 488..787 +
1691481318.935685-CDS-H-paniculata_contig51027:487..7871691481318.935685-CDS-H-paniculata_contig51027:487..787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51027 488..787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51027.12395.1prot_H-paniculata_contig51027.12395.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51027 488..787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51027.12395.1

>prot_H-paniculata_contig51027.12395.1 ID=prot_H-paniculata_contig51027.12395.1|Name=mRNA_H-paniculata_contig51027.12395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MTSRDAFASGGDATWRPGDGYSPQTTIDVVKSRGMHCLQLKMTASASPPS
LLPQHVERQEKFEPAIASWRGVRATGSFPTLVLATVLRRNPSNLSRDRNW
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mRNA from alignment at H-paniculata_contig51027:469..787+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51027.12395.1 ID=mRNA_H-paniculata_contig51027.12395.1|Name=mRNA_H-paniculata_contig51027.12395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=319bp|location=Sequence derived from alignment at H-paniculata_contig51027:469..787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGCTGAGGCAACCATAATGACCAGCAGGGACGCATTTGCCTCTGGGG
GGGACGCCACGTGGAGGCCTGGCGATGGGTACAGCCCGCAGACGACTATA
GATGTGGTCAAGTCGAGAGGCATGCACTGTCTGCAGCTAAAAATGACAGC
CTCTGCTTCTCCACCTTCACTGCTTCCTCAACATGTTGAAAGGCAAGAAA
AGTTTGAGCCCGCAATTGCTTCATGGAGAGGTGTCAGAGCAACCGGAAGC
TTTCCCACCTTAGTTTTAGCAACTGTTTTGCGGAGAAACCCGAGTAACCT
GAGTAGAGACCGAAATTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig51027:469..787+

>mRNA_H-paniculata_contig51027.12395.1 ID=mRNA_H-paniculata_contig51027.12395.1|Name=mRNA_H-paniculata_contig51027.12395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig51027:469..787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCAGCAGGGACGCATTTGCCTCTGGGGGGGACGCCACGTGGAGGCC
TGGCGATGGGTACAGCCCGCAGACGACTATAGATGTGGTCAAGTCGAGAG
GCATGCACTGTCTGCAGCTAAAAATGACAGCCTCTGCTTCTCCACCTTCA
CTGCTTCCTCAACATGTTGAAAGGCAAGAAAAGTTTGAGCCCGCAATTGC
TTCATGGAGAGGTGTCAGAGCAACCGGAAGCTTTCCCACCTTAGTTTTAG
CAACTGTTTTGCGGAGAAACCCGAGTAACCTGAGTAGAGACCGAAATTGG
ATGACCAGCAGGGACGCATTTGCCTCTGGGGGGGACGCCACGTGGAGGCC
TGGCGATGGGTACAGCCCGCAGACGACTATAGATGTGGTCAAGTCGAGAG
GCATGCACTGTCTGCAGCTAAAAATGACAGCCTCTGCTTCTCCACCTTCA
CTGCTTCCTCAACATGTTGAAAGGCAAGAAAAGTTTGAGCCCGCAATTGC
TTCATGGAGAGGTGTCAGAGCAACCGGAAGCTTTCCCACCTTAGTTTTAG
CAACTGTTTTGCGGAGAAACCCGAGTAACCTGAGTAGAGACCGAAATTGG
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