mRNA_H-paniculata_contig51.12390.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51.12390.1
Unique NamemRNA_H-paniculata_contig51.12390.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig51.12390.1 vs. uniprot
Match: D7FT68_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT68_ECTSI)

HSP 1 Score: 614 bits (1583), Expect = 4.870e-204
Identity = 303/339 (89.38%), Postives = 320/339 (94.40%), Query Frame = 1
Query:    1 PEFRKLLFGLCFFHALVQERRMYGPIGWNIPYEFNESDLRISVQQLAMFLDENARVPFKALNYTAGECNYGGRVTDDKDRRTLHCVLSRMYQPALLDEGARISASGEYVMPPDGPRKAYLDYIESLPLTAAPEVFGLHDNASITRAQSDTVQLLKSVLLTESSGGGSGGADKETTINTVAADILSKIPEEFDMEAAQIRYPVRWDESMNTVLCQELQRFNNLTNAIKSSLVNIQKAVKGLVVMSAALEILGNELFFGKIPTMWGSKSYPSRKTLSGYISDLLQRLSFFGGWLRNKPPPVFWVSGFFFTQAFLTGASQNFARRYTIPIDHVGFAQESMPK 1017
            PEFRKLLFGLCFFHALVQERRMYGPIGWNIPYEFNESDLRISVQQLAMFL+ENARVPFKALNYTAGECNYGGRVTDDKDRRTLH VL RMY   LL++GA +SASG+YVMPPDGPRKAYL+YIESLPLTAAPEVFGLHDNASITRAQSDT QLLKSVLLTESSGGGSGGADKE TI+ VAADILSK+P EFDMEAAQIRYPVRWDESMNTVLCQELQRFNNLT AIKSSLV+IQ+AVKGLVVMSA LE+LGNELFFG IPTMW   SYPSRK+L+GY++DLLQRL+FFG WLR KPPPVFWVS FFFTQAFLTGASQNFARRYTIPIDHVGF+QESMPK
Sbjct: 1241 PEFRKLLFGLCFFHALVQERRMYGPIGWNIPYEFNESDLRISVQQLAMFLNENARVPFKALNYTAGECNYGGRVTDDKDRRTLHSVLHRMYHSNLLEDGALLSASGDYVMPPDGPRKAYLEYIESLPLTAAPEVFGLHDNASITRAQSDTAQLLKSVLLTESSGGGSGGADKEITISNVAADILSKVPVEFDMEAAQIRYPVRWDESMNTVLCQELQRFNNLTGAIKSSLVSIQRAVKGLVVMSADLEVLGNELFFGTIPTMWKPTSYPSRKSLAGYVTDLLQRLAFFGKWLRTKPPPVFWVSSFFFTQAFLTGASQNFARRYTIPIDHVGFSQESMPK 1579          
BLAST of mRNA_H-paniculata_contig51.12390.1 vs. uniprot
Match: A0A6H5L4R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4R7_9PHAE)

HSP 1 Score: 518 bits (1333), Expect = 3.700e-164
Identity = 268/349 (76.79%), Postives = 293/349 (83.95%), Query Frame = 1
Query:    1 PEFRKLLFGLCFFHALVQERRMYGPIGWNIPYEFNESDLRISVQQLAMFLDENARVPFKALNYTAGECNYGGRVTDDKDRRTLHCVLSRMYQPALLDEGARISASGEYVMPPDGPRKAYLDYIESLPLTAAPEVFGLHDNASITRAQSDTVQLLKSVLLTESSGGGSGGADKETTINTVAADILSKIPEEFDMEAAQIRYPVRWDESMNTVLCQELQRFNNLTNAIKSSLVNIQKAVKGLVVMSAALEI---------LGNELFFGKIPTMWGSKSYPSRKTLSGYISDLLQRLSFFGGWLRNKPPPVFWVSGFFFTQAFLTGASQNFARRYTIPIDHVGFAQESMPKV 1020
            PEFRKLLFGLCFFHALVQERRMYGPIGWNIPYEFNESDLRISVQQLAMFL+ENAR    A+++      +           +L  + S +   +    GA +S+SG+YVMPPDGPRK YL+YIESLPLTAAPEVFGLHDNASITRAQSDT QLLKSVLLTESSGGGSGGADKE TI+ VAADILSK+P EFDMEAAQIRYPVRWDESMNTVLCQELQRFNNLT A+KSSLV+IQ+AVKGLVVMSA LE+         LGNELFFG IPTMW   SYPSRK+L+GY++DLLQRL+FFG WLR KPPPVFWVS FFFTQAFLTGASQNFARRYTIPIDHVGF+QESMPKV
Sbjct: 4098 PEFRKLLFGLCFFHALVQERRMYGPIGWNIPYEFNESDLRISVQQLAMFLNENARKSPSAVSHRHRTAFF-----------SLTPLFSALSPASRHVTGALLSSSGDYVMPPDGPRKTYLEYIESLPLTAAPEVFGLHDNASITRAQSDTAQLLKSVLLTESSGGGSGGADKEITISNVAADILSKVPVEFDMEAAQIRYPVRWDESMNTVLCQELQRFNNLTGAVKSSLVSIQRAVKGLVVMSADLEVMTRVFWGVVLGNELFFGTIPTMWKPTSYPSRKSLAGYVTDLLQRLAFFGKWLRTKPPPVFWVSSFFFTQAFLTGASQNFARRYTIPIDHVGFSQESMPKV 4435          
BLAST of mRNA_H-paniculata_contig51.12390.1 vs. uniprot
Match: A0A2D5NI67_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5NI67_9BACT)

HSP 1 Score: 463 bits (1191), Expect = 4.430e-155
Identity = 226/339 (66.67%), Postives = 270/339 (79.65%), Query Frame = 1
Query:    1 PEFRKLLFGLCFFHALVQERRMYGPIGWNIPYEFNESDLRISVQQLAMFLDENARVPFKALNYTAGECNYGGRVTDDKDRRTLHCVLSRMYQPALLDEGARISASGEYVMPPDGPRKAYLDYIESLPLTAAPEVFGLHDNASITRAQSDTVQLLKSVLLTESSGGGSGGADKETTINT-VAADILSKIPEEFDMEAAQIRYPVRWDESMNTVLCQELQRFNNLTNAIKSSLVNIQKAVKGLVVMSAALEILGNELFFGKIPTMWGSKSYPSRKTLSGYISDLLQRLSFFGGWLRNKPPPVFWVSGFFFTQAFLTGASQNFARRYTIPIDHVGFAQESMP 1014
            PEFR+LL+GLCFFHALVQERR++GPIGWNIPYEFN SDL+ISV+Q+AMFL+EN  +PFKALNY  GECNYGGRVTDDKDRRTL+C+L   +    L E   I+ SG Y  PPDG  + +L YIE+LPL+A PEVFGLH+NA+IT+ Q+DT +L + +L TE    G             VAADILSKIP+ FDME A IRYPV+W+ESMNTVLCQEL RFNNL + I++SL+NIQKAVKGL+VMS+ L++LG+ LFFG IP MW +KSYPS K L GYI+DLL RL+FF GWL ++PP +FW+SGFFFTQAFLTGASQNFARRYTIPID+V F  E MP
Sbjct:  332 PEFRRLLYGLCFFHALVQERRLFGPIGWNIPYEFNLSDLKISVKQIAMFLNENDYIPFKALNYCTGECNYGGRVTDDKDRRTLNCILLNFFNKDFLAEDHNITPSGSYKAPPDGTYEDFLGYIETLPLSAPPEVFGLHENATITKDQNDTNKLFEGILSTEKGNSGXXXXXXXXXXXXMVAADILSKIPKNFDMENAMIRYPVKWEESMNTVLCQELIRFNNLLDVIRNSLINIQKAVKGLIVMSSELDVLGSNLFFGIIPVMWKAKSYPSLKNLGGYITDLLDRLNFFKGWLEDRPPSIFWISGFFFTQAFLTGASQNFARRYTIPIDNVVFDFEMMP 670          
BLAST of mRNA_H-paniculata_contig51.12390.1 vs. uniprot
Match: A0A2P4XYV7_9STRA (Dynein heavy chain n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XYV7_9STRA)

HSP 1 Score: 454 bits (1167), Expect = 1.630e-154
Identity = 220/340 (64.71%), Postives = 265/340 (77.94%), Query Frame = 1
Query:    4 EFRKLLFGLCFFHALVQERRMYGPIGWNIPYEFNESDLRISVQQLAMFLDENARVPFKALNYTAGECNYGGRVTDDKDRRTLHCVLSRMYQPALLDEGARISASGEYVMPPDGPRKAYLDYIESLPLTAAPEVFGLHDNASITRAQSDTVQLLKSVLLTESSGGGSGGAD--KETTINTVAADILSKIPEEFDMEAAQIRYPVRWDESMNTVLCQELQRFNNLTNAIKSSLVNIQKAVKGLVVMSAALEILGNELFFGKIPTMWGSKSYPSRKTLSGYISDLLQRLSFFGGWLRNKPPPVFWVSGFFFTQAFLTGASQNFARRYTIPIDHVGFAQESMPK 1017
            EFR LL+ LCFFHALV+ERR +GP+GWNI YEFNESDL IS++QLAMF+DEN ++P +ALNY  GECNYGGRVTDDKDRRTL  VL + Y   +  EG      G Y MPPDG   AYL +IE LPL A P VFGLHDNA+IT+ Q+ T +L + VLLT+SSGGGS G+   +E  +  VA DIL+++P  FDME AQIRYPVRWDESMNTVLCQEL RFNNL + I+SSL +++KA+KGLVVMSA LE +   LF+GKIP +W SKSYPS K L  Y++DLL+R++FF  WL  KPP VFW+SGFFFTQAFLTGASQN+AR+YT+PID +GF  E MP+
Sbjct:  101 EFRVLLYSLCFFHALVRERRQFGPLGWNIQYEFNESDLSISIRQLAMFVDENVQLPLRALNYCTGECNYGGRVTDDKDRRTLMSVLGKFYCVDVFKEGYAFDEQGVYTMPPDGDYDAYLKFIEDLPLVAPPGVFGLHDNATITKDQNATAKLCRDVLLTQSSGGGSEGSSGSQEELVEVVANDILARLPPNFDMEVAQIRYPVRWDESMNTVLCQELVRFNNLMSTIRSSLESLRKALKGLVVMSAELENVSKSLFYGKIPALWASKSYPSLKPLGSYVTDLLERIAFFNKWLMEKPPVVFWISGFFFTQAFLTGASQNYARKYTLPIDQLGFDHEPMPR 440          
BLAST of mRNA_H-paniculata_contig51.12390.1 vs. uniprot
Match: A0A0W8DGJ2_PHYNI (Heat shock 70 kDa protein 14 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DGJ2_PHYNI)

HSP 1 Score: 451 bits (1161), Expect = 1.090e-153
Identity = 219/341 (64.22%), Postives = 265/341 (77.71%), Query Frame = 1
Query:    4 EFRKLLFGLCFFHALVQERRMYGPIGWNIPYEFNESDLRISVQQLAMFLDENARVPFKALNYTAGECNYGGRVTDDKDRRTLHCVLSRMYQPALLDEGARISASGEYVMPPDGPRKAYLDYIESLPLTAAPEVFGLHDNASITRAQSDTVQLLKSVLLTESSGGGS---GGADKETTINTVAADILSKIPEEFDMEAAQIRYPVRWDESMNTVLCQELQRFNNLTNAIKSSLVNIQKAVKGLVVMSAALEILGNELFFGKIPTMWGSKSYPSRKTLSGYISDLLQRLSFFGGWLRNKPPPVFWVSGFFFTQAFLTGASQNFARRYTIPIDHVGFAQESMPK 1017
            EFR LL+ LCFFHALV+ERR +GP+GWNI YEFNESDL IS++QLAMF+DEN ++P +ALNY  GECNYGGRVTDDKDRRTL  VL + Y   +  E       G Y +PPDG  ++YL +IE LPL A P VFGLHDNA+IT+ Q+ T +L + VLLT+SSGGGS    G+ +E  +  VA DILS++P  FDME AQIRYPVRWDESMNTVLCQEL RFNNL + I+SSL ++QKA+KGLVVMSA LE +   LF+GKIP +W SKSYPS K L  Y++DLL+R++FF  WL  KPP VFW+SGFFFTQAFLTGASQN+AR+YT+PID +GF  E MP+
Sbjct:  167 EFRVLLYSLCFFHALVRERRQFGPLGWNIQYEFNESDLSISIRQLAMFIDENVQLPLRALNYCTGECNYGGRVTDDKDRRTLMSVLGKFYCLDVFKEDYAFDEQGLYTIPPDGEYESYLKFIEGLPLVAPPGVFGLHDNATITKDQNATAKLCRDVLLTQSSGGGSEGSSGSSQEELVEVVANDILSRLPPNFDMEVAQIRYPVRWDESMNTVLCQELVRFNNLMSTIRSSLESLQKALKGLVVMSAELENVSKSLFYGKIPALWASKSYPSLKPLGSYVTDLLERIAFFNKWLLEKPPVVFWISGFFFTQAFLTGASQNYARKYTLPIDQLGFDHEPMPR 507          
BLAST of mRNA_H-paniculata_contig51.12390.1 vs. uniprot
Match: A0A7S4D9S9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9S9_HETAK)

HSP 1 Score: 468 bits (1204), Expect = 3.060e-153
Identity = 223/335 (66.57%), Postives = 274/335 (81.79%), Query Frame = 1
Query:    7 FRKLLFGLCFFHALVQERRMYGPIGWNIPYEFNESDLRISVQQLAMFLDENARVPFKALNYTAGECNYGGRVTDDKDRRTLHCVLSRMYQPALLDEGARISASGEYVMPPDGPRKAYLDYIESLPLTAAPEVFGLHDNASITRAQSDTVQLLKSVLLTESSGGGSGGADKETTINTVAADILSKIPEEFDMEAAQIRYPVRWDESMNTVLCQELQRFNNLTNAIKSSLVNIQKAVKGLVVMSAALEILGNELFFGKIPTMWGSKSYPSRKTLSGYISDLLQRLSFFGGWLRNKPPPVFWVSGFFFTQAFLTGASQNFARRYTIPIDHVGFAQESM 1011
            FR+LL+ +CFFHALVQERR++GP+GWNIPYEFN SDL+ISVQQLAMFLDEN  VPFKAL Y  GECNYGGRVTDDKDRR LH +L+R+  P  L+EG+ +S SG YV+PPDG  +AY++++++LPL  APEVFGLH+NA+I++  +DT  L  S+L TE+  GG   + ++ TI+TVAADIL K+P  FDME AQ++YPV W ESMNTVLCQEL RFNNL  A+ +SL NI+KAVKGLVVMSA LE+LGN LFFG+IP +W +KSYPS K L+ Y++DLL RL+FF  WL NKPP V+WVSGFFFTQAFLTGA+QNFAR+YT+PID+V F  E M
Sbjct:  677 FRRLLYAMCFFHALVQERRLFGPLGWNIPYEFNNSDLKISVQQLAMFLDENDEVPFKALRYCVGECNYGGRVTDDKDRRCLHSILNRLVCPEALEEGSPLSPSGTYVVPPDGSHQAYMEFVDTLPLVVAPEVFGLHENANISKDNNDTNNLFNSILSTENGSGG-XXSSQDDTISTVAADILQKMPAPFDMEEAQLKYPVTWSESMNTVLCQELLRFNNLNKAVVNSLKNIRKAVKGLVVMSAELEVLGNSLFFGRIPALWKAKSYPSLKPLASYVTDLLARLAFFQDWLDNKPPSVYWVSGFFFTQAFLTGANQNFARKYTVPIDNVDFDFEMM 1010          
BLAST of mRNA_H-paniculata_contig51.12390.1 vs. uniprot
Match: D0RMF8_PHYIT (Dynein heavy chain n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0RMF8_PHYIT)

HSP 1 Score: 444 bits (1141), Expect = 1.730e-149
Identity = 221/341 (64.81%), Postives = 265/341 (77.71%), Query Frame = 1
Query:    4 EFRKLLFGLCFFHALVQERRMYGPIGWNIPYEFNESDLRISVQQLAMFLDENARVPFKALNYTAGECNYGGRVTDDKDRRTLHCVLSRMYQPALLDEGARISASGEYVMPPDGPRKAYLDYIESLPLTAAPEVFGLHDNASITRAQSDTVQLLKSVLLTESSGGGS---GGADKETTINTVAADILSKIPEEFDMEAAQIRYPVRWDESMNTVLCQELQRFNNLTNAIKSSLVNIQKAVKGLVVMSAALEILGNELFFGKIPTMWGSKSYPSRKTLSGYISDLLQRLSFFGGWLRNKPPPVFWVSGFFFTQAFLTGASQNFARRYTIPIDHVGFAQESMPK 1017
            EFR LL+ LCFFHALV+ERR +GP+GWNI YEFNESDL IS++QLAMF+DENA++P +ALNY  GECNYGGRVTDDKDRRTL  + S        DE       G Y MPPDG  ++YL +IESLPL A P VFGLHDNA+IT+ Q+ T +L + VLLT+SSGGGS    G+ +E  +  VA DILS++P  FDME AQIRYPVRWDESMNTVLCQEL RFNNL + I+SSL ++QKA+KGLVVMSA LE +   LF+GKIP +W SKSYPS K L  Y++DLL+R++FF  WL  KPP VFW+SGFFFTQAFLTGASQN+AR+YT+PID +GF  E MP+
Sbjct:  291 EFRVLLYSLCFFHALVRERRQFGPLGWNIQYEFNESDLSISIRQLAMFIDENAQLPLRALNYCTGECNYGGRVTDDKDRRTLMAMRS--------DE------RGVYTMPPDGDYESYLKFIESLPLVAPPGVFGLHDNATITKDQNATAKLCRDVLLTQSSGGGSEGSSGSSQEELVEVVANDILSRLPPNFDMEVAQIRYPVRWDESMNTVLCQELVRFNNLMSTIRSSLESLQKALKGLVVMSAELENVSKSLFYGKIPALWASKSYPSLKPLGSYVTDLLERIAFFNTWLLEKPPVVFWISGFFFTQAFLTGASQNYARKYTLPIDQLGFDHEPMPR 617          
BLAST of mRNA_H-paniculata_contig51.12390.1 vs. uniprot
Match: A0A8K1FD19_PYTOL (Uncharacterized protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A8K1FD19_PYTOL)

HSP 1 Score: 459 bits (1182), Expect = 6.950e-144
Identity = 216/341 (63.34%), Postives = 270/341 (79.18%), Query Frame = 1
Query:    1 PEFRKLLFGLCFFHALVQERRMYGPIGWNIPYEFNESDLRISVQQLAMFLDENARVPFKALNYTAGECNYGGRVTDDKDRRTLHCVLSRMYQPALLDEGARISASGEYVMPPDGPRKAYLDYIESLPLTAAPEVFGLHDNASITRAQSDTVQLLKSVLLTESSGGGSGG--ADKETTINTVAADILSKIPEEFDMEAAQIRYPVRWDESMNTVLCQELQRFNNLTNAIKSSLVNIQKAVKGLVVMSAALEILGNELFFGKIPTMWGSKSYPSRKTLSGYISDLLQRLSFFGGWLRNKPPPVFWVSGFFFTQAFLTGASQNFARRYTIPIDHVGFAQESMPK 1017
            PEFRKLL+ LCFFHALV+ERR +GP+GWNI YEFNESDL IS++QLAMF+DEN  +P +ALNY  GECNYGGRVTDDKDRRTL C+L R Y   +  +      +  Y +PPDG  + ++ YIESLPL A P VFGLHDNA+IT+ Q+ T++L   VLLT+S+GGGS      +E  + +VA+DIL ++PE FDME AQIRYPV+WDESMNTVLCQEL RFNNL + I+SSLV++++A+KGLVVMS+ LE +   LFFGKIPTMW ++SYPS K L  Y++DLL+R++FF  WL +KPP V+WVSGFFFTQAFLTGASQN+AR+YT+PID +GF  E MP+
Sbjct: 3941 PEFRKLLYALCFFHALVRERRQFGPLGWNIQYEFNESDLSISIRQLAMFIDENEVIPLRALNYCTGECNYGGRVTDDKDRRTLACILGRFYTMDVFSDSYAFDENDVYKLPPDGTHETFIKYIESLPLVAPPGVFGLHDNATITKDQNQTIKLCSDVLLTQSTGGGSSSNTMSQEDMVESVASDILQRLPENFDMEVAQIRYPVQWDESMNTVLCQELVRFNNLISTIRSSLVSLRRALKGLVVMSSELENVSQSLFFGKIPTMWAARSYPSLKPLGSYVNDLLERIAFFSKWLNDKPPTVYWVSGFFFTQAFLTGASQNYARKYTLPIDQLGFDHEPMPR 4281          
BLAST of mRNA_H-paniculata_contig51.12390.1 vs. uniprot
Match: D0MXQ9_PHYIT (Dynein heavy chain n=28 Tax=Phytophthora TaxID=4783 RepID=D0MXQ9_PHYIT)

HSP 1 Score: 459 bits (1181), Expect = 9.460e-144
Identity = 223/341 (65.40%), Postives = 268/341 (78.59%), Query Frame = 1
Query:    4 EFRKLLFGLCFFHALVQERRMYGPIGWNIPYEFNESDLRISVQQLAMFLDENARVPFKALNYTAGECNYGGRVTDDKDRRTLHCVLSRMYQPALLDEGARISASGEYVMPPDGPRKAYLDYIESLPLTAAPEVFGLHDNASITRAQSDTVQLLKSVLLTESSGGGS---GGADKETTINTVAADILSKIPEEFDMEAAQIRYPVRWDESMNTVLCQELQRFNNLTNAIKSSLVNIQKAVKGLVVMSAALEILGNELFFGKIPTMWGSKSYPSRKTLSGYISDLLQRLSFFGGWLRNKPPPVFWVSGFFFTQAFLTGASQNFARRYTIPIDHVGFAQESMPK 1017
            EFR LL+ LCFFHALV+ERR +GP+GWNI YEFNESDL IS++QLAMF+DENA++P +ALNY  GECNYGGRVTDDKDRRTL  VL + Y   +  EG  +   G Y MPPDG   +YL +IESLPL A P VFGLHDNA+IT+ Q+ T +L + VLLT+SSGGGS    G+ +E  +  VA DILS++P  FDME AQIRYPVRWDESMNTVLCQEL RFNNL + I+SSL ++QKA+KGLVVMSA LE +   LF+GKIP +W SKSYPS K L  Y++DLL+R++FF  WL  KPP VFW+SGFFFTQAFLTGASQN+AR+YT+PID +GF  E MP+
Sbjct: 3884 EFRVLLYSLCFFHALVRERRQFGPLGWNIQYEFNESDLSISIRQLAMFIDENAQLPLRALNYCTGECNYGGRVTDDKDRRTLMSVLGKFYCVDVYKEGYALDEQGVYTMPPDGDYDSYLKFIESLPLVAPPGVFGLHDNATITKDQNATAKLCRDVLLTQSSGGGSEGSSGSSQEELVEVVANDILSRLPPNFDMEVAQIRYPVRWDESMNTVLCQELVRFNNLMSTIRSSLESLQKALKGLVVMSAELENVSKSLFYGKIPALWASKSYPSLKPLGSYVTDLLERIAFFNTWLLEKPPVVFWISGFFFTQAFLTGASQNYARKYTLPIDQLGFDHEPMPR 4224          
BLAST of mRNA_H-paniculata_contig51.12390.1 vs. uniprot
Match: A0A3F2RZ69_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RZ69_9STRA)

HSP 1 Score: 455 bits (1170), Expect = 2.780e-142
Identity = 221/340 (65.00%), Postives = 265/340 (77.94%), Query Frame = 1
Query:    4 EFRKLLFGLCFFHALVQERRMYGPIGWNIPYEFNESDLRISVQQLAMFLDENARVPFKALNYTAGECNYGGRVTDDKDRRTLHCVLSRMYQPALLDEGARISASGEYVMPPDGPRKAYLDYIESLPLTAAPEVFGLHDNASITRAQSDTVQLLKSVLLTESSGGGSGGAD--KETTINTVAADILSKIPEEFDMEAAQIRYPVRWDESMNTVLCQELQRFNNLTNAIKSSLVNIQKAVKGLVVMSAALEILGNELFFGKIPTMWGSKSYPSRKTLSGYISDLLQRLSFFGGWLRNKPPPVFWVSGFFFTQAFLTGASQNFARRYTIPIDHVGFAQESMPK 1017
            EFR LLF LCFFHALV+ERR +GP+GWNI YEFNESDL IS++QLAMF+DENA++P +ALNY  GECNYGGRVTDDKDRRTL  VL R Y   + +EG      G Y +PPDG   +YL +IE LPL A P VFGLHDNA+IT+ Q+ TV+L + VLLT+SSGGGS G+   +E  +  VA DIL ++P  FDME AQIRYPVRWDESMNTV+CQEL RFNNL + I+ SL ++QKA+KGLVVMSA LE +   LF+GKIP +W SKSYPS K L  Y++DLL+R+ FF  WL  KPP VFW+SGFFFTQAFLTGASQN+AR+YT+PID +GF  E MP+
Sbjct: 2925 EFRVLLFALCFFHALVRERRQFGPLGWNIQYEFNESDLSISIRQLAMFIDENAQLPLRALNYCTGECNYGGRVTDDKDRRTLMSVLGRFYCVDVFNEGYSFDEHGVYALPPDGDYDSYLKFIEGLPLVAPPGVFGLHDNATITKDQNATVKLCRDVLLTQSSGGGSEGSSGSQEELVEVVANDILQRLPPNFDMEVAQIRYPVRWDESMNTVVCQELVRFNNLMSTIRLSLESLQKALKGLVVMSAELENVSKSLFYGKIPALWASKSYPSLKPLGSYVTDLLERIEFFNKWLMEKPPVVFWISGFFFTQAFLTGASQNYARKYTLPIDQLGFDHEPMPR 3264          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51.12390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT68_ECTSI4.870e-20489.38Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5L4R7_9PHAE3.700e-16476.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2D5NI67_9BACT4.430e-15566.67Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2P4XYV7_9STRA1.630e-15464.71Dynein heavy chain n=1 Tax=Phytophthora palmivora ... [more]
A0A0W8DGJ2_PHYNI1.090e-15364.22Heat shock 70 kDa protein 14 n=1 Tax=Phytophthora ... [more]
A0A7S4D9S9_HETAK3.060e-15366.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D0RMF8_PHYIT1.730e-14964.81Dynein heavy chain n=1 Tax=Phytophthora infestans ... [more]
A0A8K1FD19_PYTOL6.950e-14463.34Uncharacterized protein n=2 Tax=Eukaryota TaxID=27... [more]
D0MXQ9_PHYIT9.460e-14465.40Dynein heavy chain n=28 Tax=Phytophthora TaxID=478... [more]
A0A3F2RZ69_9STRA2.780e-14265.00Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51contigH-paniculata_contig51:136..10854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score462.6
Seed ortholog evalue1.6e-127
Seed eggNOG ortholog4787.PITG_03488T0
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Dynein heavy chain and region D6 of dynein motor
EggNOG OGs3QBR7@4776,COG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons7
Model size1028
Cds size1026
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930494.5212705-CDS-H-paniculata_contig51:135..2921622930494.5212705-CDS-H-paniculata_contig51:135..292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51 136..292 -
1691481317.5918207-CDS-H-paniculata_contig51:135..2921691481317.5918207-CDS-H-paniculata_contig51:135..292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51 136..292 -
1622930494.5361853-CDS-H-paniculata_contig51:967..10921622930494.5361853-CDS-H-paniculata_contig51:967..1092Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51 968..1092 -
1691481317.6056015-CDS-H-paniculata_contig51:967..10921691481317.6056015-CDS-H-paniculata_contig51:967..1092Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51 968..1092 -
1622930494.5538359-CDS-H-paniculata_contig51:1388..15741622930494.5538359-CDS-H-paniculata_contig51:1388..1574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51 1389..1574 -
1691481317.6142552-CDS-H-paniculata_contig51:1388..15741691481317.6142552-CDS-H-paniculata_contig51:1388..1574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51 1389..1574 -
1622930494.5703087-CDS-H-paniculata_contig51:8005..81911622930494.5703087-CDS-H-paniculata_contig51:8005..8191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51 8006..8191 -
1691481317.6256354-CDS-H-paniculata_contig51:8005..81911691481317.6256354-CDS-H-paniculata_contig51:8005..8191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51 8006..8191 -
1622930494.5889049-CDS-H-paniculata_contig51:8851..89281622930494.5889049-CDS-H-paniculata_contig51:8851..8928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51 8852..8928 -
1691481317.6414433-CDS-H-paniculata_contig51:8851..89281691481317.6414433-CDS-H-paniculata_contig51:8851..8928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51 8852..8928 -
1622930494.6035686-CDS-H-paniculata_contig51:9784..99151622930494.6035686-CDS-H-paniculata_contig51:9784..9915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51 9785..9915 -
1691481317.6518614-CDS-H-paniculata_contig51:9784..99151691481317.6518614-CDS-H-paniculata_contig51:9784..9915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51 9785..9915 -
1622930494.6169088-CDS-H-paniculata_contig51:10690..108541622930494.6169088-CDS-H-paniculata_contig51:10690..10854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51 10691..10854 -
1691481317.661426-CDS-H-paniculata_contig51:10690..108541691481317.661426-CDS-H-paniculata_contig51:10690..10854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51 10691..10854 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51.12390.1prot_H-paniculata_contig51.12390.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51 136..10854 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51.12390.1

>prot_H-paniculata_contig51.12390.1 ID=prot_H-paniculata_contig51.12390.1|Name=mRNA_H-paniculata_contig51.12390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=342bp
PEFRKLLFGLCFFHALVQERRMYGPIGWNIPYEFNESDLRISVQQLAMFL
DENARVPFKALNYTAGECNYGGRVTDDKDRRTLHCVLSRMYQPALLDEGA
RISASGEYVMPPDGPRKAYLDYIESLPLTAAPEVFGLHDNASITRAQSDT
VQLLKSVLLTESSGGGSGGADKETTINTVAADILSKIPEEFDMEAAQIRY
PVRWDESMNTVLCQELQRFNNLTNAIKSSLVNIQKAVKGLVVMSAALEIL
GNELFFGKIPTMWGSKSYPSRKTLSGYISDLLQRLSFFGGWLRNKPPPVF
WVSGFFFTQAFLTGASQNFARRYTIPIDHVGFAQESMPKVR*
back to top

mRNA from alignment at H-paniculata_contig51:136..10854-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51.12390.1 ID=mRNA_H-paniculata_contig51.12390.1|Name=mRNA_H-paniculata_contig51.12390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10719bp|location=Sequence derived from alignment at H-paniculata_contig51:136..10854- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGAGTTTCGAAAATTGCTGTTTGGCCTGTGCTTTTTCCACGCACTGGT GCAAGAACGACGAATGTACGGGCCTATCGGATGGAACATTCCGTACGAGT TCAACGAATCGGATCTTCGGATATCGGTGCAGCAGCTCGCCATGTTCCTC GACGAAAACGCCAGGTATCACAACCGAATAACGGAGTGTAGCAGTGACGC CACGACTACAGCTTGATATCCCTTCGATAAATTATGCCCCCCCCTGGATA AATACGGATACTACCAGCGTTTGCGACGAAAGTTTCAGATTATTTGCGTG GAGGTCCAGCATGAGCACGTTTCTTTTATGTGCCCCCGATGATCTACAAC TTCTCCGAATACTGGTAAAACAAAATAAACATGGGTCAACACTTTGCTGT ATGTCCCCGCACATTCTGAACCTCAGGCAAACGTTTCTCATTTTCATCGT ATTTCCTCGAAGAGCTAAGAGTTTGTATTTTGTCCGGGGAGGGAAAGTGT GCCGGAACTAGTCCGAAACGATTATCGCCTCACTATATGAATAGTTGAGG ATTGTTGTAAGCCTTGGTTGTGACAAATCAAAGTTAACACTCTACTTAGG AAGAAGTATTGTAATGTGCTCAAGCTTCGCTCGCCTTTCGAGACTTTTCA CGACCTTGCTGGGAAGCTGTGCACTGCGCTACAACTCGGGGTGCCTGTAT CGATCGGACCATTAAAAAGCCGCAATCCCACTTCCAAATTTCTTCATGGT TTTCGAACAGAATACAAAACAGGGGCAACGCCGAGGCGGGTTAAAACTGC AGGTGCGGGTATCGATAACAGCGAGACTTTTGGACGTGCCTTCTGCGGAG AAAACGTTCACACTTTACGGTCATTTCGAGTCTGCGCGCTTCTATTGATT TGAAGTAACCAACGACTGACTTCTTGTTTGTTTGTTTAGGGTTCCCTTTA AAGCACTGAACTACACGGCGGGGGAGTGCAACTACGGCGGAAGGGTTACG GACGATAAAGACCGACGAACACTGCACTGCGTGTTGAGTCGGATGTACCA ACCGGCTCTGCTCGATGAAGGTAAAGAGCTATCGCGAATATCTGTCGTCA ACGGCGAGCTGTTGAGCACGTTTGCACTCACAAGTGCTAAGTTTTTTCTT TTTTAACCCCCGGAAGGCTGAGGCAAAAACCTTTACCACTGCTTCCATAC TCAGGCATTCACCCAAGCATGTCTACATTTCCTTTAGTAGAACAGAGTTA TTTATTCCTCTGCGGGGTAGGCGCCACCCCGGTTCGGCCGAACCAAGTAG TCAGTGTAGGAGTTTCACCCACTAAAAGAACAAGTGCTAAGTTTCCCGCG TTCATGACGCCAATAGTGCACACCTACTGCTATTACAATTGTCCTCAACG CGGGGAAGTGCCAATAATATACCGAGGACAATGTTAGAGATAGTAGCCTT ACCGTGGGCAAGTGTTGTTTTCATCTTGTCTGATGACATCTTTAACGAAT CGTGTTGTACCTGTCGGATATAGTGGAGACGTTGCGACTTTCAAAGCATT AAATCAATACCCCTAAATAACCCTCCAATTTTCTCGAGGGATCTGGTGTT TAGAACCATCTGAAACGTCAAAGGTCAAAACATACTTTGGAGTTGCACCT AGCAGCTACAATTCTTTGATGTTGATCTTGCGCTCAGTAGGACCGTTTGC TGTTCTGACAGCCGACGGGAAACGCCTGCACACAAGTAATGAAATGCCTA TTGGCAATGTGGTTCTTGCAGGCAAATTTTCAGTTCTGATCTTTTCAGGC GTTAACCGCATGGTCTTACATTTGTTTTCAGAACCTTTTGTCGACCGATG ACAACCGAGTCATACCATACAAAATCGAGAGTGTTAACGACGATACCCTC TCCCCGGAACGTTTTTGGTCAACCAGGAGCGCGAATATCGGCAAGTGGAG AGTACGTCATGCCACCAGACGGACCCCGCAAGGCTTACCTAGACTACATT GAGGTACACTATCATGCACAGCATGCAGAATGCGTATGCACACGAGTGGA TTTCCGATGTATCTTCGTGTTTTTCCTTTGACTAGAACAAGCTTAAACCG GTCTGCAAAATATGGTCGGCATGCCTCACTTCTAACCCTTTCGGGACGCA GCCCCCTGAGATCTGCTTTCTGATGTCTGTTTTTGGGACATTTTGCTTCA TTCTAGACAAAAGGGGGTTGCATCAGAGCCCGGAACGCAACCTATCTCAG ATCTGGTTTTGGGTACCCAGATCTGCTTCTGGGCACCCCTTTGGACCGCT CCAAAAATTGCTGATTTTCAACACGAATCGGATGTGACCCTTCAATGGTC TCTCGAAAAGTGCACCGCCCCGAAGTGGTTAACCAAAAGAAGGCATAGTG AATGGAAACCGTACCGCCCAAACAATAGCTATATTCGTTTTCTGCTGCCG CACAAACCTGTAGCAGTTATCTTATAGCGTTCCCGACACACACCTAATGG CAAAGAGTCATCAACGCCGCACCGAAGACGTGTTTCAGGAACATCACAAC GAATTTTTCACTTGCACATGTATGCCCCTCGCCCCCCCCTCAGCCCACTT CCCCACCCTACTTCGACCAACCGCTTGTCTTGCCTTTTGTGCATACATCG AACACACACATAGAGCTTGCCGTTAACGGCTGCTCCAGAGGTATTTGGCC TTCACGACAATGCGTCCATCACTCGAGCCCAGAGCGATACCGTGCAACTG CTGAAGTCGGTGCTGCTGACGGAGTCTAGCGGGGGCGGATCCGGAGGCGC AGATAAGGAAACCACAATCAACACCGTTGCAGCCGATATTCTGTCTAAGG TATGTATGTTTGTAGCACTGAACGGCTCCCCCAGTATCCACATATCGCAA GCCTCATCGGTGTTCCCCGTTTCCAATAATTTCCCCTGCTCTTCGCGGTG CGAACGAAATGCAGTCGTGTTATTCCAAAACCCTTACAGTCATATCGAAA ACTTCAAAAACAAAGCCAGGACAGCGGGGTGTCATTACCCAAGCAAAACT TGAGGGCGGACTTTGTCAGCGGAACAAAACGTTAGGCAAGTAATACACAA CTATGAACGTTTTCCGGTGGACTGGGGGAATCTGAAATACGTCACTGTGG CTATTCTTCTGCCCAGTATTGGCTATGACTATCTACCTATAGCATGTATA CTGATTGGATGCTTGTTAGTGTTGAGGAATGGGGATGCCATACAATAACG CAGAGTATTGACGGTCGGGAGGCTGGCACGGGATATAGTCTTGAATTTTC TAGAGTCGGAACGTTCCGCGGTTTGTTGCTTATTGGACGTTCAGGAGCTG GAACATCCTGCGGGTTATTTGGGAATTTCTACAGCAAGACATTGTCAACA ACATGGAAGGTGCACCGACCCCAGTTGTCTCACTCTCGTCTGTATATCAT AATATATGAACACGTAAACTATTTTGTCTGCACTACTGCGTCACAAGCCA TAAGGATATCTGTATATCCTAACAGGTTAATGAGCCATCGATTCAGCTAG ATAGCATAATGCAGTGAGTTTACTAAGCAAGGTATAGAGAGCTGGTGCGA GGAGCATCGTAAAAAAAACAACTTCAGAAACAGGCTGTGAGAGCAAGATC TACGAGGACGGCAAGACCTACAAGGACAGCAAGGCATATAACGCCAGCAA GGTATATTACGAAGCCAAGAACCGTGAGCACTGCAACGACTGTACTGACA GAAAGGACAGAAGCGGCGTAACTTCAAATTGAAACCGCCACCCGTCGACA TGGATTTTTCACACTTACCAAAGTTTGATGGAAAACGGCACGAGTTCTCC GATTGGGCTCTAAGCATTGCGTCCACCATGATTTATTAAAGACTCTCAGA CACGATGACAGGACAGACGACTCGCTCAGAAGGAAAAAACGAGGATATGG AGGTTGAACAATGGATACATGAAAATTGGCAGGTGTACGCATCTGGTAAT GTCTTTGCAAGGCAGCGCGCATAGGGTGTTGCGCAACACCCTATGGGCAG CGATGATGAACAAGCACGGAGGGGTCGGAGACGAAGTAGAGGAATAGCTA AACAGGCTTCGGAACATACGACTGAAGGAAGGAGAAAGTGCTGATGACTA CTGCAGTAGAATAGAAGAGTTGGCACAGAGGGTCAGAGAAGCTGGGTTAA ATGTCTCGGTCGCCGCGCAAAGGTGGGTCGTTATACGGGGAATACCGGAC AACCTCGCGCACGCTAGATCTGCACTAATATCTATCATGAGGGACGTGCA CGAAAGCTAAAGCAAATGCTTCCGGGCAGACAACGCGATGTTAGCAGACT TCTCAATACAAAAGAGAACTTCAGTGAGCGTGAGGAGACCAAGGGGGACG AAGAGAATGGGGCGGTAGTGCTTGCGGTTACGACGGGGGAACCGAGTCAT AGACGCCCCCGACAGCGCGAAGGAGGAAGCGGTCCGAGGAGACGTTCCTG TGCTATCTGTGGACGCATAGGTCATGCCGCCTTTGAATGCGACACATCCG AAGTGGAGGAGGGCGAAAATACAGTGCTGGAACTGCGGAAGGCACGGCCA TGGGCAATGGGATTGCCTCGAAAAGCGGAAGAGAAACCCACTACGCGGGA GCGGGCGTGGTGGCCCAGGTAAATATGTACGGGGTGCAAAAGACTACGAT ACCGTACTATACACCAACAACATTCCCCTGCACGATCAGGATGTTTTTCT TTCCCTCTTGCTCGTGCTCCACGATGGATCGTGTCTTCCATCTTGCAAGT GTATTGGCTTATCGATTCCGGCTGCACTGGACACCACTAACCCCGCAACG TAACCTACTCCGAAACTTTCGTCAGGTCACGCATAGCCCCATTGGCACAG CGGGGAAGGGGAAACTACATGTAGAAGGGCAGGGAGATGTGGATGGTTTG ATTTCGACGGCGGAGGGTGTTATGAGGATGACATTCTGCAACGTATTACA CGTACCGGAGACAACGGAAAGTATATTATCGGTGGAAAAGATGGTCCAGC AAGGGGTGGAGGCCCATTTTGGGCCGAACCGGCTGCGACTTCACTGCAAC GGTATCACTATCAAGTGTAATTACACATGGAGCAAGGAGTACAAGTTAAG AATGATAGGGGGTGATGAAGCAAAGGAGAAAGCAAAAGAACTACTACCTG TCATGAAGGGCGTGCAGGTCCTTCTCTTGTCCAGGGGAGAAAGTGCCCGG TCCAAGTAAGGGGGTACGAAAAGCAGGAAACCGCAAAAAACCAGGGACGA ACGAAAATTGGCTGAGGAGCGCAAAGGCCAAGAGAAACAAAAGCCGGTAG TGAACACCAAGCTGCTTCACGAGCGACTAGGGCAAGTGCGCGATCTCCAC ACGGCCGCGCAGCAGCAAGGCATCAAGTTGCGCGGGAAGCTCGGCGTCTG TTAGCGTTTGAGTGAGGGAAAACATCGAAGCAATCAGGAAAGAAGTATCG GGAAGAGCAGACAACGGAGCGACTGGAGCTAGTGCATACTGACATCGCAG GACCAGTAGACGACTACAGTGGAATGCGGAAGGTCTATGCCCTGAGACAC AATCAAAGGCGTTGTGGGCTCTGAAACAGTTCGAGTGGGACATCGTGAAG GCAAACGGGCTACAAAAATAACGCCTTCCGTCAGATGAAGGAGGAGTTTA CAGGAGAAGAGTTCCGAAGTTTTGGGCGGAAAGTGGCACCAAGCAAAGCA TTTCTGCCGCCTAGACGCCGCATTAAAACAATGTGGCGGAGTGCAGCTGG CGTAGAGTTTTCGAGATGACCCGAAGTAAGATGATCACCACTACCATGGG CCGCAGGTGTTGGGCGGAGGCGGCGCGCGCGGCTGTGTACTGCTTAAATC GCGCCCCGACGCGACCGCACAACGGAGGGACGCCGTATGAGAAATGGCAC GGTGAGACACCAAAGCTTAACCACCTTCGTGTCTTCGGTTGCACGGCGTA CGTGGTGCTCCAGTCGCAGCAGAGACGACACCTCGATGACAAAGCGTGGG TGTGGGTATTTCTGGGGTACGATGAGGACCGCCCGAATTATCGCATATAT AACCCGGAAAACAAGAGCCTTCAGTCAAGCAGGAATATAAGATTTGATGA AGAGGACTTCGTAACCGGTCAAATCGGACAGCTGGAGCACGACGGGACGC GAGACATGGAAGGCTTGTTTTCAGCACCGTCGATCACATCAGCGGCCACG CGATCTCGCGCTCAAGGCGAGCGACGAGACGCAACCAACACGGAAAACCC AACGTCTGCATCGCCAGCCGCCAGCGCCAGCCCGTACAGCGCCTTGAGCG ATGATGATAGTGATAACTCGGAGATGAACGATGATGAACCAAAAGCCGAA GACACATCATCGGCGAAGGCATATGCGCCCACATCTCGGGGGGAAACCAG AACAGAGTCAGGAACGGAGGAGCGGCGACCGCGAGATCGGTCACCAATAC TGACACGGGTGAGAGCAAGGGAAAACCGCGAAGAGGATTCAGGCGCTACC GCGTGCGTGGCTGAAGTGGAAGACACCAGCAACCCTATACGGGCGGTATC TGAGGAAAAAGCAAAATCTGCGGCACAAGCATTGAAGAGCCCAGAGGCGA AAAAATGGAGCGCCGCAATGGAGGAGGAATGAAGGGCGTTGGTGAAAAAT GGGACGTGGGAGAGCGAGGACCCGGGGACGTTACCGGTAGGGCGGAAAGC CATCTGTACCAAATGGATTATCAAGCGCAAACTGAAGGAGGGCGGCAGCT TGGCACGCTATAGAAAGCGACTGGTGGCTCAAGCTTTTTCACAGGTGGAG GGTGAAGATTTCTTTGAAACCAGTGCCCCCGTAGGTCGCATGTCGACGTT GCGTACTGTTTTTAGCCTTGTCGCCAAACGTATTTTCGAAGCAGAAGATA TAAACATAGATGCGGCCTATTTGAACGCCCCCGTAGAAGCAGAGCTGTTT GTTAAGCTACCCCCCCAAGTTTTCCCCTTTCTTCCGAGATATAACGTTTG TGCGCCTCCTGCGTAAAAGCCTGTATGACCTCAAGCAGAGCGACCGAAAT TGGAATAACACTCTTGACGATGTTCTTGTTGAGATAGGACTCCAGCGTTC CACTACCGACCCATGCTTGTACTTCTCTCGCGACGAAGGAGGAGAAACAG ACATTCTCGTGGCCATCTATGTTGACGACCTGGTCATCGGTGGACGTCGT GAGAAAGTAGACGAGTGTAAGCACAATATAAGTCGGCGTTTCAGGATGAA AGACTTGGGCTCCCTCTCGCGCGTGTTGGGAATGGAAGAACGACGTGATC GCCGCAATGGTACCGCATCAGTATCCTAAGGTGGCTACATCCGCGAGGTA CTGAAAAGATACGGCTTTGACGAGTGTCGAGGCGTGCCCACCCCTGTAGA GGGAAAATTGAAGAGTTTGGCACCCGAGTCGGCCGACAAGCCCCCCGAAC CAAAACCACTTGGGGTTGTACCGTCGGACATAGGCGCAGGAGTACAAGAA ATCAGCAGTGGGAGAAGTGGCAGTTCATCTGAATACAGAGGCATGGTAGG ATCATTCATGTACGCCTCGACAGGAGCTAGACCCGATATAGCATACGTGG TACACCAAGCAGCACATCGTATGGAGAGTCTATGTCGGGAAAACTTCAGT GCATGCAAGCGCATTTTTCGTTATCTCAATACTGCGCCTGGCCTCGGCAT TGCGTTCGGCGGTAAGAGTAATAATGGTCTCGGTCTGGAAGGATTCGTTG ATGACGATTGACTGAAAGATGTTGAGGACCGAAAGTCCACAACAGGATAC GTATCCAAGCTGAACGGTGGTGCGATAAGTTGGTGATCTAGGAAGCAGCA GTTAGTTACGTGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAGGAGAAG CGGGCAAGGAGACGGTATATCTAGGGGATTTACTAGGATCGATAGGTTTC GGATGCAGGGGGAGCACGAAATTATTTGAGAAGAACCAATCAGCTATCAA TCTCAGCAAGGGATCTGGCGCACACTGCAGGACAAATCACATCGGAATGC GCTGGCACGGAATTCGAGAGTGGGTTCGGGAAGGAACGTTGGGGTTGAAA TGCGTGCAGACCGGCGACCACTTGCTAATATTTTAGCATAAGGACTGAGC AAAGTAAAGTTGCAGAGACTAAAAACAATATTCATGTGATATTTTTTACA GTATTGTGGAAACAAATGTCGTCGTTGATAGTTTTGGGCTGAGCAACGAA ATTATGGGGAATAGATTTCGTGATCCTGTTGGATGTAGACGTTGTAACAT TGAGGGGGTAGTTTAATTGTTTTTATGCGAAAGGATTGATATCTCGTGCG ATATCAAAACGTGAGTAATAGATTTTGGCCATTGATTGGACACGGGGTTT CGATATCGAGGGGAAGTGTTGAAGAATGAGAATGCGATACGATAACGCAG AGTATCGACCGTCGGGAGGCTGGCACGGGATATTGTTTTGAATGTTCTAG AGTCGGAACTTTCCGCGGTTTGTTGCTTATTGAATCTTCAGGAGCTCGAA CATTCCGCGGGTTATTTGGGAATTTCTAGTGCAAGATATCGTCAACGACA TGGAAGGTGCACCGACCCCAGTTGTCTCCCTCTCGTCTGCGCATCAAAAT ATATGAACAAGTAAACTATTTTGTCTGCACTACTGTGTCACAAGCCACAA GGATATCTGTATATCCTAACAGTTGGGAGTTCATGCACCGCGTTCTTTAC CTATCCGCGAGAAACGGCCGTGCGTTAGCGAGCACACCTCCAGTCACGGA TCCCTGTGACTTGGAATTACCCCGTTGCTGCTGACAACCTTTGCAGCGGA GACCGAGTGTAAAGATAGGCAGCATTTTCAAATTAAACGCGCAAGAACTG CTGAGAAAACGTTCTGCTTGACAAGTTCGCAAGGCAACGCATGCCAATTG CTATCTCTCACTTACAGATCCTTCTCAAGCGTACAGCACCTATCTTGCGT CTGCACTCGCATACAGCGGCGTCACCACTGCAAACAGAAACCCAAGTGCC CGAAATACGAAACACTAGATATGTCGGTTGACGATCACACGTAAACAGCA TTCGCGGCATGGTCAGGAAGGTAATTGTTGATATAGCATTGTCAGGGAGC AGAAACGATGATTTTACGTTTTTCGATTCTGACCCCAACCCTCGACCTAA CCCTGTCTTCGTCTGCCGCTGAAAATGAAGATTCCGGAGGAATTCGACAT GGAGGCAGCACAGATCCGATATCCGGTCCGGTGGGACGAGAGCATGAACA CGGTGTTGTGCCAAGAGCTTCAGAGGTTCAACAACCTCACCAACGCCATC AAATCGTCCCTCGTTAACATACAAAAAGCGGTCAAGGGGCTCGTGGTCAT GAGCGCTGCCCTTGAGGTGTGTCCGTGTTAGCATCAACCGTTGTGCTAAT TTGGTCAATACACTCAGCACGCCAACTGATTTGTGCACACTGTTGGGTCA TGCTCCGTATGTTTTGCACTGTGTGGCGCCCACGCACCTTTTTTTTCGTG ACTACGTCGCGGGGCGAAGTAAAATGAACCACTACGCAACATAGATCATT TCACAACTAGTTTGTTGATTCTTCATGCCATGAAACAGCATGTCTGCAGT CGAAACAGTGCCTGCGGTGATCTCAATGAAGCGGGCGTCTTGGCGTTTTT TTCTTCTGGCAGATCTTGGGCAACGAGTTGTTTTTCGGGAAGATTCCAAC TATGTGGGGCTCCAAGAGCTACCCTTCGAGGAAAACGCTATCGGGGTACA TCTCCGATTTATTGCAACGGTTATCCTTCTTCGGAGGGTGAGCAGCACAG CGTAGTGATAAAGATTAGAGGGTAATGGTTCCACCCCATACTGAACGCAC ATTCTCCGGGCAGAAATAAGATGAAGTGTAACACACGGATTGACAAAGTA ACAGAAACATGGTTCGGAACAATGCTTATTGAATAATAAATACTGACTGT GATGAAGCGCTATTGAAAAAGTAACGTCACAGTTCATCCAGAATTAAACT TGATCGTCAAGATAAGTCACTCTGGTCGCCCTTACAAACACTCTCAATCC CCGTACCCCATCGAAGTCTATTGAACATACTTGCATATGAGTAGTACAAC GATGAAGGAAGAATTAAAATGCACCAATTGTAACAAGTGTTCCGCGGAAC GCGTCCGGCGGATCGCGCCGCGACGTTCTGCTGCATTGCATCACTTGTAC CGTGTGCGATGACCTCATTATCTTCCATAACACTTACAGAGTATCGGTCT GCAATGCTGGATACAGGGTAGTACAGCATTTTCCCCGGAGGAGGTAAAGT GCACGTTTCCCCCCTTGAAATAATTTCCAGATGCAGCCCCCCTTTTAGTC GTCGCGCGACTCATATACTCCCTCTGTTCTGACCCGCCCGCTCTCATTCC TCTCCACTCCTCCCCGCTCCCATTGTCAATCAATATCGATGCGAATACTT TGCCATTTGTAGGTGGTTGAGGAACAAACCTCCGCCAGTTTTCTGGGTTT CTGGGTTCTTTTTTACCCAAGCATTTTTAACCGGCGCAAGTCAAAACTTT GCAAGGAGGTACACGATCCCAATCGATCACGTCGGTTTTGCCCAAGAATC CATGCCCAAGGTGCGATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig51:136..10854-

>mRNA_H-paniculata_contig51.12390.1 ID=mRNA_H-paniculata_contig51.12390.1|Name=mRNA_H-paniculata_contig51.12390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2052bp|location=Sequence derived from alignment at H-paniculata_contig51:136..10854- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGAGTTTCGAAAATTGCTGTTTGGCCTGTGCTTTTTCCACGCACTGGT
GCAAGAACGACGAATGTACGGGCCTATCGGATGGAACATTCCGTACGAGT
TCAACGAATCGGATCTTCGGATATCGGTGCAGCAGCTCGCCATGTTCCTC
GACGAAAACGCCAGCCCGAGTTTCGAAAATTGCTGTTTGGCCTGTGCTTT
TTCCACGCACTGGTGCAAGAACGACGAATGTACGGGCCTATCGGATGGAA
CATTCCGTACGAGTTCAACGAATCGGATCTTCGGATATCGGTGCAGCAGC
TCGCCATGTTCCTCGACGAAAACGCCAGGGTTCCCTTTAAAGCACTGAAC
TACACGGCGGGGGAGTGCAACTACGGCGGAAGGGTTACGGACGATAAAGA
CCGACGAACACTGCACTGCGTGTTGAGTCGGATGTACCAACCGGCTCTGC
TCGATGAAGGGTTCCCTTTAAAGCACTGAACTACACGGCGGGGGAGTGCA
ACTACGGCGGAAGGGTTACGGACGATAAAGACCGACGAACACTGCACTGC
GTGTTGAGTCGGATGTACCAACCGGCTCTGCTCGATGAAGGAGCGCGAAT
ATCGGCAAGTGGAGAGTACGTCATGCCACCAGACGGACCCCGCAAGGCTT
ACCTAGACTACATTGAGGAGCGCGAATATCGGCAAGTGGAGAGTACGTCA
TGCCACCAGACGGACCCCGCAAGGCTTACCTAGACTACATTGAGAGCTTG
CCGTTAACGGCTGCTCCAGAGGTATTTGGCCTTCACGACAATGCGTCCAT
CACTCGAGCCCAGAGCGATACCGTGCAACTGCTGAAGTCGGTGCTGCTGA
CGGAGTCTAGCGGGGGCGGATCCGGAGGCGCAGATAAGGAAACCACAATC
AACACCGTTGCAGCCGATATTCTGTCTAAGAGCTTGCCGTTAACGGCTGC
TCCAGAGGTATTTGGCCTTCACGACAATGCGTCCATCACTCGAGCCCAGA
GCGATACCGTGCAACTGCTGAAGTCGGTGCTGCTGACGGAGTCTAGCGGG
GGCGGATCCGGAGGCGCAGATAAGGAAACCACAATCAACACCGTTGCAGC
CGATATTCTGTCTAAGATTCCGGAGGAATTCGACATGGAGGCAGCACAGA
TCCGATATCCGGTCCGGTGGGACGAGAGCATGAACACGGTGTTGTGCCAA
GAGCTTCAGAGGTTCAACAACCTCACCAACGCCATCAAATCGTCCCTCGT
TAACATACAAAAAGCGGTCAAGGGGCTCGTGGTCATGAGCGCTGCCCTTG
AGATTCCGGAGGAATTCGACATGGAGGCAGCACAGATCCGATATCCGGTC
CGGTGGGACGAGAGCATGAACACGGTGTTGTGCCAAGAGCTTCAGAGGTT
CAACAACCTCACCAACGCCATCAAATCGTCCCTCGTTAACATACAAAAAG
CGGTCAAGGGGCTCGTGGTCATGAGCGCTGCCCTTGAGATCTTGGGCAAC
GAGTTGTTTTTCGGGAAGATTCCAACTATGTGGGGCTCCAAGAGCTACCC
TTCGAGGAAAACGCTATCGGGGTACATCTCCGATTTATTGCAACGGTTAT
CCTTCTTCGGAGGATCTTGGGCAACGAGTTGTTTTTCGGGAAGATTCCAA
CTATGTGGGGCTCCAAGAGCTACCCTTCGAGGAAAACGCTATCGGGGTAC
ATCTCCGATTTATTGCAACGGTTATCCTTCTTCGGAGGGTGGTTGAGGAA
CAAACCTCCGCCAGTTTTCTGGGTTTCTGGGTTCTTTTTTACCCAAGCAT
TTTTAACCGGCGCAAGTCAAAACTTTGCAAGGAGGTACACGATCCCAATC
GATCACGTCGGTTTTGCCCAAGAATCCATGCCCAAGGTGCGATGAGTGGT
TGAGGAACAAACCTCCGCCAGTTTTCTGGGTTTCTGGGTTCTTTTTTACC
CAAGCATTTTTAACCGGCGCAAGTCAAAACTTTGCAAGGAGGTACACGAT
CCCAATCGATCACGTCGGTTTTGCCCAAGAATCCATGCCCAAGGTGCGAT
GA
back to top