mRNA_H-paniculata_contig5099.12388.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5099.12388.1 vs. uniprot
Match: D8LS56_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS56_ECTSI) HSP 1 Score: 327 bits (839), Expect = 1.340e-96 Identity = 233/381 (61.15%), Postives = 259/381 (67.98%), Query Frame = 3
Query: 2856 ASSVALKNIPDVKIAAHDLAEETNRSCSVCLEDHELGEMAVKLPCAHIFHRDCVWEWLELHCTCPVCRFELETADRNYEKERKLRMQGRRPRYRRRELESLSIPQIRNLARGQNVSIAGCLEKKDIVRRIVDSGRVELIEAINPEYNETELSEMSARQLRSLMLQVGIDVQGCLEKQDLLERVRDSGLVTVTHGEANDSDSVRPSSPXXXXXXXXXXXXXXTYIPHFNPNHTASTTGATSTGGGQAQGGLRHGSSG--DHVPAVEREEASSR---RPWXXXXXXAPRSXXXXXXXXXXXXXXXXXXXXXVE------------------------LESMSVKDLRVVMSGLGISMVGCIEKRDMVERIRGSGRYRGGAGGG 3911
AS ALKNIP+VKIAA DLAEETNRSCSVCLEDHELGE VKLPCAHIFHR+CVWEWLELHCTCPVCRFELET D YE+ER++RM+GRRPRYRR+ELE LSIPQ+RNLARGQNV+IAGCLEK DIVR ++DSG +E++ + P Y+ ELS M RQLRSLMLQ GI +GCLEK DLL+R+ S LVTVTHGEA V P +P XXXXXXXXXX A GAT G G + A + SR RPWXXXXXX XXXXXXXXXXXXXXXXXXXXX LESMSVK+LR + S LG+S GC+EKRDMVERIR GRYR AG G
Sbjct: 28 ASRTALKNIPEVKIAALDLAEETNRSCSVCLEDHELGETVVKLPCAHIFHRECVWEWLELHCTCPVCRFELETEDAGYERERRVRMRGRRPRYRRQELEGLSIPQVRNLARGQNVNIAGCLEKADIVRCLLDSGTIEVVNSEIPSYDAEELSNMGLRQLRSLMLQAGIGTEGCLEKADLLDRIASSRLVTVTHGEA-----VPPPAPPSFAXXXXXXXXXX--------XRQAPERGATXXXXXXXXXXXARGQGGVEERRWAEPNSNSFSRAGIRPWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGRPLESMSVKELREITSRLGVSTAGCLEKRDMVERIRSCGRYREAAGVG 395
BLAST of mRNA_H-paniculata_contig5099.12388.1 vs. uniprot
Match: A0A836C9U0_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9U0_9STRA) HSP 1 Score: 195 bits (496), Expect = 9.420e-52 Identity = 125/344 (36.34%), Postives = 170/344 (49.42%), Query Frame = 3
Query: 2847 PPPASSVALKNIPDVKIAAHDLAEETNRSCSVCLEDHELGEMAVKLPCAHIFHRDCVWEWLELHCTCPVCRFELETADRNYEKERKLRMQGRRPRYRRRELESLSIPQIRNLARGQNVSIAGCLEKKDIVRRIVDSGRVELIEAINPEYNETELSEMSARQLRSLMLQVGIDVQ-GCLEKQDLLERVRDSGLVTVTH-GEANDSDSVRPSSPXXXXXXXXXXXXXXTYIPHFNPNHTASTTGATSTGGGQAQGGLRHGSSGDHVPAVEREEASSRRPWXXXXXXAPRSXXXXXXXXXXXXXXXXXXXXXVELESMSVKDLRVVMSGLGISMVGCIEKRDMVERI 3872
PPPAS AL+ IP+V + DL EE NR CS+CL+DH L E+ +LPCAHIFH++CV +WL +CTCP CR+ELET + +E R+ RMQGR R+RRRELE S+ ++R++A V+ GCLEK D++ I S R E+ EA PEY +L ++ RQL+ +M VG+ + G LEK DL+ ++ +SG + V G A + S PSSP F + A R + G A R E EL V L+ +M IS+ GC+EK DMV+RI
Sbjct: 8 PPPASKKALRQIPEVLVTLDDLVEEANRCCSICLDDHMLAEVVCRLPCAHIFHKECVLDWLLRNCTCPACRYELETENAAFEAGRRQRMQGRTLRFRRRELELSSVARLRSIAGDLGVNTDGCLEKSDLIACIARSPRAEVFEAALPEYTHAQLMALTVRQLKDIMAGVGVLLATGVLEKADLIAQLANSGRIAVVDVGAAAAAGSHCPSSPSSHESSGPSS---------FQQQNGAQPQXXXXXXXXXXXAATRTSTEGGENDAAVRMEN--------------------------------------ELRHQPVTALKAIMRAESISLAGCLEKNDMVQRI 304
BLAST of mRNA_H-paniculata_contig5099.12388.1 vs. uniprot
Match: A0A482S6I1_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6I1_9ARCH) HSP 1 Score: 182 bits (461), Expect = 3.220e-46 Identity = 113/345 (32.75%), Postives = 179/345 (51.88%), Query Frame = 3
Query: 2850 PPASSVALKNIPDVKIAAHDLAEETNRSCSVCLEDHELGEMAVKLPCAHIFHRDCVWEWLELHCTCPVCRFELETADRNYEKERKLRMQGRRPRYRRRELESLSIPQIRNLARGQNVSIAGCLEKKDIVRRIVDSGRVELIEAINP-EYNETELSEMSARQLRSLMLQVGIDVQGCLEKQDLLERVRDSGLVTVTHGEAN--DSDSVRPSSPXXXXXXXXXXXXXXTYIPHFNPNHTASTTGATSTGGGQAQGGLRHGSSGDHVPAVEREEASSRRPWXXXXXXAPRSXXXXXXXXXXXXXXXXXXXXXVELESMSVKDLRVVMSGLGISMVGCIEKRDMVERIR 3875
PPAS+ A+ N+P V + + DL EETN+ C CL + ELG A KLPC H++HR CV +WL+ CTCPVCR+ELET D YE +RK RM+ R+ R RR E++S S+ Q+R L N++IA C++KK+IV +V SG +++ E + P E + + + S QL+ L+L G+ G LEK +L + + +S + + GE D DS+R ++ P ++ ++T TT + + + G + SS + R EL+ MS+ +R + + LG+S GC++K D+++R++
Sbjct: 64 PPASNRAINNLPSVIVTSDDLLEETNKECVFCLVEQELGSTACKLPCGHLYHRGCVVQWLQRKCTCPVCRYELETDDPQYETQRKKRMKTRKLRMRRDEIQSKSVAQLRQLCGQLNLTIAHCIDKKEIVDMMVASGLIDITERVPPIEISYEDFNNKSVSQLKHLLLSFGLSDAGALEKHELRKVLLESERIHIFDGETVVVDDDSMRTNTNSIVSYAADSASSYVDPSPSYSSSYT--TTQPSPSSPLASPGVILTVSSSTATTPTSSSRVTHR-------------------------------FTTAELQDMSLSRIRSLCTELGVSTAGCLDKLDVIDRLK 375
BLAST of mRNA_H-paniculata_contig5099.12388.1 vs. uniprot
Match: A0A7S4A164_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A164_9STRA) HSP 1 Score: 167 bits (424), Expect = 8.190e-43 Identity = 85/208 (40.87%), Postives = 132/208 (63.46%), Query Frame = 3
Query: 2856 ASSVALKNIPDVKIAAHDLAEETNRSCSVCLEDHELGEMAVKLPCAHIFHRDCVWEWLELHCTCPVCRFELETADRNYEKERKL--RMQGRRPRYRRRELESLSIPQIRNLARGQNVSIAGCLEKKDIVRRIVDSGRVELIEAINPEYNETELSEMSARQLRSLMLQVGIDVQGCLEKQDLLERVRDSGLVTVTHGEANDSDSVRPSS 3473
AS+ ALK IP V++AA DL ++ N C++CLEDH GE+A +LPC H+FH+DCV EWL HC CPVCR+EL T YE+ R+ R GRR R R+REL++++I + ++ + S GC+E+ D++RR++ S RV+++ E + +EL MS + L + G+ + G LE+ D++ + SG V + G A ++ S P++
Sbjct: 17 ASTSALKRIPIVRVAADDLTKD-NECCTICLEDHVPGELAARLPCGHLFHKDCVVEWLSRHCVCPVCRYELPTDSVVYERTRREHNREGGRRVRVRKRELDAMNIRALLDVLKAAGESARGCVERDDLIRRVLTSSRVDVVAETTVEVSRSELDAMSLGAVARLAKRAGVVIDGALERPDVVALLEQSGRVLIVDGAAEETTSPVPAA 223
BLAST of mRNA_H-paniculata_contig5099.12388.1 vs. uniprot
Match: A0A8J2SU41_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SU41_9STRA) HSP 1 Score: 171 bits (433), Expect = 3.060e-42 Identity = 92/212 (43.40%), Postives = 132/212 (62.26%), Query Frame = 3
Query: 2844 GPPPASSVALKNIPDVKIAAHDLAEETNRSCSVCLEDHELGEMAVKLPCAHIFHRDCVWEWLELHCTCPVCRFELETADRNYEKERKLRMQGRRPRYRRRELESLSIPQIRNLA-RGQNVSIAGCLEKKDIVRRIVDSGRVELI--EAINPEYNETELSEMSARQLRSLMLQVGIDVQGCLEKQDLLERVRDSGLVTVTHGEANDSDSVRPS 3470
GPPP AL+++P V+ DLA++ NR C VCLE E+G+ A KLPC H+FH +CV +WL H TCP CR+EL ++D +E R+ RM R PRYRRREL L + ++R LA RG V AG EK D+V+ ++D+ V++I E + ++ S RQL+ LM VG+D C++K+DL++ + SGLV A+D D+ P+
Sbjct: 140 GPPPMDEAALRDLPVVRATEEDLAKDGNRECCVCLEAQEVGDRATKLPCGHLFHTECVVQWLRKHGTCPSCRYELASSDAAFEASRRERMARRVPRYRRRELNRLPVRELRALAARGDRV-FAGLTEKADLVKALIDANLVQIIPEEVRQLDATRAAVAAWSIRQLKQLMADVGVDSTRCVDKRDLVDAIAASGLVAFA---ADDDDATAPA 347
BLAST of mRNA_H-paniculata_contig5099.12388.1 vs. uniprot
Match: A0A7S2XTC7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTC7_9STRA) HSP 1 Score: 164 bits (414), Expect = 9.010e-40 Identity = 91/207 (43.96%), Postives = 124/207 (59.90%), Query Frame = 3
Query: 2841 RGPPPASSVALKNIPDVKIAAHDLAEETNRSCSVCLEDHELGEMAVKLPCAHIFHRDCVWEWLELHCTCPVCRFELETADRNYEKERKLRMQGRRPRYRRRELESLSIPQIRNLARGQNVSIAGCLEKKDIVRRIVDSGRVELIEAINP-EYNETELSEMSARQLRSLMLQVGI--DVQGCLEKQDLLERVRDSGLVTVTHGEANDS 3452
+G PPAS A++ +P V +A DL +E NR C +C E + L + +LPCAHIFH +C+ WL HCTCPVCR+EL T D YE+ R RM+ R+PRY R ELE +SI ++R L VS EKKDIV+ VDS R+++I A P +Y ++L +M QL+ M + G+ D LEK D++ SG V V E D+
Sbjct: 51 KGAPPASQKAIRQLPTVIVAPEDLVDENNRECCICFEPNSLKDRVTRLPCAHIFHHECIKGWLTRHCTCPVCRYELPTDDSAYERTRVERMKHRKPRYARYELERMSISELRALGDFCKVS-RSFKEKKDIVQACVDSSRIDIIAAPEPVQYRASDLKQMKPGQLKKSMEKAGVFFDPIDVLEKDDMIRIFISSGRVDVLEEEITDA 256
BLAST of mRNA_H-paniculata_contig5099.12388.1 vs. uniprot
Match: A0A7R9U2I9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2I9_9STRA) HSP 1 Score: 162 bits (409), Expect = 8.240e-39 Identity = 93/264 (35.23%), Postives = 138/264 (52.27%), Query Frame = 3
Query: 2835 RERGPPPASSVALKNIPDVKIAAHDLAEETNRSCSVCLEDHELGEMAVKLPCAHIFHRDCVWEWLELHCTCPVCRFELETADRNYEKERKLRMQGRRPRYRRRELESLSIPQIRNLARGQNVSIA-GCLEKKDIVRRIVDSGRVELI-------------------EAINPEYNETE----------------------------------------------------LSEMSARQLRSLMLQVGIDVQGCLEKQDLLERVRD 3410
R GPPPAS L+N+P+VK++ DL + N SC +C+EDHELGEMA KLPC HIFH +C+ +WL+ HCTCPVCRFEL T D +E+ R+ RM GR+ +YRRRELES S+ +I+++ V L K D+++ ++DS +++L+ E N +Y+ + LS+ S +LRS+M + GI +QGC+EK D+++++ D
Sbjct: 173 RRTGPPPASRSVLRNLPEVKVSQVDLETDGNESCCICMEDHELGEMATKLPCGHIFHTECIKDWLQRHCTCPVCRFELPTEDAGFEEHRRERMGGRKRKYRRRELESKSVREIKHIMMEIGVRPPPDALMKSDLIQVLIDSEQIQLLPDTDGAAAGAEPSYGHVAREQDNRKYSPEQKQSTTEEKVDEAAATREGVRRRAGERGSGRSGAMPTAPSPRAAPRQESATEVLSKKSVSELRSIMRERGISLQGCIEKSDMVQKIVD 436
BLAST of mRNA_H-paniculata_contig5099.12388.1 vs. uniprot
Match: A0A7S1WIB1_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WIB1_ALECA) HSP 1 Score: 157 bits (396), Expect = 2.370e-38 Identity = 110/377 (29.18%), Postives = 176/377 (46.68%), Query Frame = 3
Query: 2835 RERGPPPASSVALKNIPDVKIAAHDLAEETNRSCSVCLEDHELGEMAVKLPCAHIFHRDCVWEWLELHCTCPVCRFELETADRNYEKERKLRMQGRRPRYRRRELESLSIPQIRNLARGQNVSIAGCLEKKDIVRRIVDSGRVELIEAINPE-------------------YNETELSEMSARQLRSLMLQVGIDVQGCLEKQDLLERVRDSGLVTVT-HGEANDSDSVRPSSPXXXXXXXXXXXXXXTYIPHFNPNHTASTTGATSTGGGQAQGGLRHGSSGDHVPAVEREEASSRRPWXXXXXXAPRSXXXXXXXXXXXXXXXXXXXXXVELESMSVKDLRVVMSGLGISMVGCIEKRDMVERIRGSGRYRGGAG 3905
R+ GPPP S+ AL+++P +K+ A+D+A + CS+CL++ +G+ A+++PC H++H DCV +WL+ CPVCRFEL T D YE+ RK RM GR+ R R +L S+ ++ LA V + GCLEK ++V +I S V++I E +++++L MS ++R+LM ++ +D C EK D++ R+ SG + V+ EA + S PS HTAS++ GG EEA++ L SV +LR + LG+S+ GC+EK ++V+RI S ++ +G
Sbjct: 9 RKTGPPPTSASALRSLPRIKVTAYDIAANESAECSICLDELVIGQPALRIPCGHLYHEDCVKDWLKKSNECPVCRFELPTDDAEYERGRKTRMAGRKLRMRHADLTVKSVQELSRLASFIGVDVRGCLEKSELVEKIAASSLVQIIPTDGVEVGGSPTSTADSSAPGRPSAFSQSQLDAMSIGEVRALMERLSVDSSDCAEKADMVRRLVLSGRILVSSEREAAATGSSAPSPGRL---------------------HTASSSSDVIMGG--------------------TEEAAA---------------------------GVASANGAGNLSGKSVGELRRLAKQLGVSLDGCLEKVELVQRIEASPAFQQNSG 317
BLAST of mRNA_H-paniculata_contig5099.12388.1 vs. uniprot
Match: A0A7S2SCZ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SCZ0_9STRA) HSP 1 Score: 152 bits (384), Expect = 1.120e-37 Identity = 74/188 (39.36%), Postives = 119/188 (63.30%), Query Frame = 3
Query: 2841 RGPPPASSVALKNIPDVKIAAHDLAEETNRSCSVCLEDHELGEMAVKLPCAHIFHRDCVWEWLELHCTCPVCRFELETADRNYEKERKLRMQGRRPRYRRRELESLSIPQIRNLARGQNVSIAGCLEKKDIVRRIVDSGRVELIEAINPEYNE-TELSEMSARQLRSLMLQVGI--DVQGCLEKQDLL 3395
R PPPA ++ +P +K+ DL +E NR C +CLE++ L + ++LPCAHI+H C+ +WL C+CP+CR+EL+T D YEK R RM+ R+PRY R ELE + I + +L N+S G EK D++ I++SG++++I A P ++ ++LS M +L+ M G+ D + +EK+D++
Sbjct: 47 RHPPPACKKIIRKLPIIKVTPEDLVDENNRECCICLEENNLNDRVLRLPCAHIYHSQCISDWLAKCCSCPICRYELQTNDSEYEKGRIERMKHRKPRYARYELERMKIRDLSSLCSRFNLSTNGMTEKADLICAILESGKIDVISAPKPVAHKLSDLSGMGVGKLKRAMADAGVFFDAKDVVEKEDMV 234
BLAST of mRNA_H-paniculata_contig5099.12388.1 vs. uniprot
Match: A0A7J6KTK3_PERCH (RING-type domain-containing protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6KTK3_PERCH) HSP 1 Score: 153 bits (387), Expect = 8.580e-37 Identity = 85/215 (39.53%), Postives = 133/215 (61.86%), Query Frame = 3
Query: 2826 QARRERGPPPASSVALKNIPDVKIAAHDLAEET--NRSCSVCLEDHELGEMAVKLPCAHIFHRDCVWEWLELHCTCPVCRFELETADRNYEKERKLRMQGRRPRYRRRELESLSIPQIRNLARGQNVSIAGCLEKKDIVRRIVDSGRVELI-----EAINPE-YNETELSEMSARQLRSLMLQVGIDVQG-CLEKQDLLERVRDSGLVTVTHGEA 3443
Q R PPPASS A++++P V I D++E+ N+ CS+CLE +G A KLPC H+F C+ WL+ +CTCPVCR+EL T D +E RK RM+ R+ R+R+R+L+++S+ +R L +S GCLEK +++ R+ S RVELI ++P Y +++L M+ +++ LM + I V +EK+ LL+ + +SG V V+ E+
Sbjct: 75 QQRHSNVPPPASSTAIQSLPQVVITPEDISEDAANNQECSICLEPQHVGNKATKLPCGHLFCTGCIVPWLKRNCTCPVCRYELPTNDAQFEAGRKDRMKQRKMRFRKRDLQNMSVRGLRQLMCELGISSEGCLEKSELLDRLEQSKRVELIPECPSSTVHPHVYTKSQLLAMTVPEIKDLMTRCNIAVPDQAVEKEQLLQMLVNSGRVVVSTDES 289 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5099.12388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5099.12388.1 >prot_H-paniculata_contig5099.12388.1 ID=prot_H-paniculata_contig5099.12388.1|Name=mRNA_H-paniculata_contig5099.12388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=434bp MNFFSTQQQQQQAGRGHGRSSNNGNIFANMGQNMQARAANPNLQFQPQAPback to top mRNA from alignment at H-paniculata_contig5099:1103..13938+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5099.12388.1 ID=mRNA_H-paniculata_contig5099.12388.1|Name=mRNA_H-paniculata_contig5099.12388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12836bp|location=Sequence derived from alignment at H-paniculata_contig5099:1103..13938+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5099:1103..13938+ >mRNA_H-paniculata_contig5099.12388.1 ID=mRNA_H-paniculata_contig5099.12388.1|Name=mRNA_H-paniculata_contig5099.12388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2604bp|location=Sequence derived from alignment at H-paniculata_contig5099:1103..13938+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |