mRNA_H-paniculata_contig5098.12387.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5098.12387.1
Unique NamemRNA_H-paniculata_contig5098.12387.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5098.12387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5098contigH-paniculata_contig5098:6237..8108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size349
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5098.12387.1prot_H-paniculata_contig5098.12387.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5098 6237..8048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930494.0222538-CDS-H-paniculata_contig5098:6236..63441622930494.0222538-CDS-H-paniculata_contig5098:6236..6344Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5098 6237..6344 -
1691481317.411482-CDS-H-paniculata_contig5098:6236..63441691481317.411482-CDS-H-paniculata_contig5098:6236..6344Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5098 6237..6344 -
1622930494.0409756-CDS-H-paniculata_contig5098:7868..80481622930494.0409756-CDS-H-paniculata_contig5098:7868..8048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5098 7869..8048 -
1691481317.424537-CDS-H-paniculata_contig5098:7868..80481691481317.424537-CDS-H-paniculata_contig5098:7868..8048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5098 7869..8048 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930494.1070518-UTR-H-paniculata_contig5098:8048..81081622930494.1070518-UTR-H-paniculata_contig5098:8048..8108Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5098 8049..8108 -
1691481317.4422913-UTR-H-paniculata_contig5098:8048..81081691481317.4422913-UTR-H-paniculata_contig5098:8048..8108Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5098 8049..8108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5098.12387.1

>prot_H-paniculata_contig5098.12387.1 ID=prot_H-paniculata_contig5098.12387.1|Name=mRNA_H-paniculata_contig5098.12387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MRPIGFALYIVVVQVAVIFAVQQGSSCFCSALRFNVLAGAAVGAERSSPS
SQQRGLYRDKSARPDVAFVGGARGSSGGGGGGGTPASTRDSNSKAL
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mRNA from alignment at H-paniculata_contig5098:6237..8108-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5098.12387.1 ID=mRNA_H-paniculata_contig5098.12387.1|Name=mRNA_H-paniculata_contig5098.12387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1872bp|location=Sequence derived from alignment at H-paniculata_contig5098:6237..8108- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTTGGCTGTGCAACGGCTGGGGTAGGGGTGCCTACCTGAAATTCCAGT
CTGTCCATTGATGAGGCCTATAGGCTTTGCATTGTATATCGTGGTGGTTC
AGGTGGCTGTGATTTTTGCCGTTCAGCAGGGATCGAGCTGCTTCTGCAGT
GCCCTTCGCTTCAACGTTCTTGCTGGTGCTGCTGTTGGTGCCGAGAGGTC
TAGTCCATCATCGCAACAGCGTGGTTTGTATCGGGACAAGGTTTGTAGAG
AAGCAGTGCAGTCTGTGCGTTGACAAAAATGAAGAAACGTGAACAGCTTT
TGCTTGGAAGCAGCTCGGTATCTGCGGCGATGTATAGATTCTATTCATGA
CAAAAGAACGTAACTCAAGTGTGCGCAAAAGGTAGACCCACCTGAACTTA
CTCTACTGCTCTTGAGATCCGGAAATACCCTGGTTGACACGAGATGGTAG
TCTAGTGACAAGTGATAACAGCAGCATCTGACTGGCACCTATGAATTACT
GCAGGTCGTGTAGTACACGATATGAACTGCTGGATTCAGCATGTAGCGCT
GGCAGAACGAAAGATTATCATGGTTGCTGGAGGCGAGCGCGGGGCTATAG
AGACAGAGATAACGCTCCCAGCGAACAACACAACAACCACGCATAAGCGA
TACTCGCAACGCTCACGACTCGCCGCATAGAGCACAAACGATCCTTGAAT
CGACGACGGTACTCGTCACTTGTACTGTACATGAGGCAGACACCACGCGA
AACATTGAATGTTTGAACTTTTCACTTCAGCACAACAGGCAGTTCAGACA
GTACAATCGCACGGCGTGTATACAGTATACAGCAGTACGCTGCAAAGGTG
GAACGTAATGAGGGCGGAGGTCCGCAGCAAATTGCACCACCGTTTCCAAA
GTATGCCATCAGGATAGCTAAATAGCGGCCGAACTTCCTGTTCGTGACTG
CTCCTGTGTCTCCGTAACAGTTAGTGATTCCAGTAGACGGGAGCTTGTGG
CCTTTGATAGTTTTCAAGTAAGCACGGTTGATTACCCATAGTCTTGCTCT
ATTCTCCCCTCCAAGTCACAATGTTACGAGATACGGATCCGCGCTAACCT
TCAATTACCGTTGCACGCGCCCCCCTTTCTCGAGCAACTCATTTTTGATG
GGGCACCCACTGGCTGTTCTGCTATTATAGTATGACATCACTGTATTGTA
ACTGTCCGCCGTTAGTTGGCATATCCAGCTTCGAGACACAAGCTTTACAG
AACCTCAAGTACTATCGAGCTAAAGGCAATGCGGTACAGCGAGATCTTCG
TCGCCTATCGACGACCTTCTGTGAGAACCTGCTGCTATATCTCGTTCCAT
TGCGAACTTTCCCATGACACATGCAGCGCGCAGTTTACAATCATGTGGTC
CTACACAACGTAAATACATATTATTAACTTAACGCACGTACCCATGCCAC
ATATGAAGTGCCTGCACATCTTCTACAGTTACCGGAACGTATTCAATATT
CAGCCAAGGCACGTGAATTATTAGCTCAGCTCAAATCTGAGGCCGCAAAC
CATTTCCACCTATTATACCATCATCGGTTAGTGGGTGGTCGGCGAGTCTT
GGAGTCGTTGATGATTGTCTTGTTCTTGCTCGGATGCCAGGAGAGCCGCT
GCACAGAAACTCAACTATACACAACCGCCTTCTATATACAGTTGTCCACT
GGTCTTCCCGTCCCTTGCACACGTCCCCCAATGCTGCCCGACCATCCATT
ATTTCGACACGAAGTCCGCACGGCCAGACGTTGCGTTCGTCGGAGGAGCA
CGCGGTAGCAGCGGCGGCGGCGGCGGCGGCGGAACTCCTGCGAGTACCAG
AGACAGTAACAGTAAGGCCTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig5098:6237..8108-

>mRNA_H-paniculata_contig5098.12387.1 ID=mRNA_H-paniculata_contig5098.12387.1|Name=mRNA_H-paniculata_contig5098.12387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig5098:6237..8108- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGCCTATAGGCTTTGCATTGTATATCGTGGTGGTTCAGGTGGCTGT
GATTTTTGCCGTTCAGCAGGGATCGAGCTGCTTCTGCAGTGCCCTTCGCT
TCAACGTTCTTGCTGGTGCTGCTGTTGGTGCCGAGAGGTCTAGTCCATCA
TCGCAACAGCGTGGTTTGTATCGGGACAAGATGAGGCCTATAGGCTTTGC
ATTGTATATCGTGGTGGTTCAGGTGGCTGTGATTTTTGCCGTTCAGCAGG
GATCGAGCTGCTTCTGCAGTGCCCTTCGCTTCAACGTTCTTGCTGGTGCT
GCTGTTGGTGCCGAGAGGTCTAGTCCATCATCGCAACAGCGTGGTTTGTA
TCGGGACAAGTCCGCACGGCCAGACGTTGCGTTCGTCGGAGGAGCACGCG
GTAGCAGCGGCGGCGGCGGCGGCGGCGGAACTCCTGCGAGTACCAGAGAC
AGTAACAGTAAGGCCTTGTCCGCACGGCCAGACGTTGCGTTCGTCGGAGG
AGCACGCGGTAGCAGCGGCGGCGGCGGCGGCGGCGGAACTCCTGCGAGTA
CCAGAGACAGTAACAGTAAGGCCTTG
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