mRNA_H-paniculata_contig5097.12385.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5097.12385.1
Unique NamemRNA_H-paniculata_contig5097.12385.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5097.12385.1 vs. uniprot
Match: A0A6H5JDI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI9_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.450e-5
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:  178 EHLDPLPDLPDT-NEGFFNRD-LDFQYPTAPVENP-FPTWGNVSSTNLAAMSA 327
            E LDPLP+LP++ +E FF ++ L+FQYPT P ENP FPTWG+  +  +AA+ A
Sbjct:    7 EELDPLPELPESADERFFTKEALEFQYPTGPAENPLFPTWGSTGA-EMAAIGA 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5097.12385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDI9_9PHAE2.450e-554.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5097contigH-paniculata_contig5097:6891..8452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size686
Cds size684
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930493.8770103-CDS-H-paniculata_contig5097:6890..73941622930493.8770103-CDS-H-paniculata_contig5097:6890..7394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5097 6891..7394 -
1691481317.3605535-CDS-H-paniculata_contig5097:6890..73941691481317.3605535-CDS-H-paniculata_contig5097:6890..7394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5097 6891..7394 -
1622930493.8966908-CDS-H-paniculata_contig5097:8272..84521622930493.8966908-CDS-H-paniculata_contig5097:8272..8452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5097 8273..8452 -
1691481317.3734677-CDS-H-paniculata_contig5097:8272..84521691481317.3734677-CDS-H-paniculata_contig5097:8272..8452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5097 8273..8452 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5097.12385.1prot_H-paniculata_contig5097.12385.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5097 6891..8452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5097.12385.1

>prot_H-paniculata_contig5097.12385.1 ID=prot_H-paniculata_contig5097.12385.1|Name=mRNA_H-paniculata_contig5097.12385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=228bp
MNRTNTLEPSTRPPPYTQMTGADACLSPLHFTEMVDSATDSGVDNENALQ
QRSNFIDILEHLDPLPDLPDTNEGFFNRDLDFQYPTAPVENPFPTWGNVS
STNLAAMSATAAAASTATPAVMATPMITSTSVTGMVDSTPLPCPNPRPLL
SEPIHAVPYAPPVASAAAGICSPPERHVFLRQRLGGESVSSGNSSTSTSS
DTGSASDDATLAGEWESRRGVAGGGVAR
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mRNA from alignment at H-paniculata_contig5097:6891..8452-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5097.12385.1 ID=mRNA_H-paniculata_contig5097.12385.1|Name=mRNA_H-paniculata_contig5097.12385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1562bp|location=Sequence derived from alignment at H-paniculata_contig5097:6891..8452- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCGTACTAACACGCTCGAACCTTCCACTAGGCCACCCCCCTACAC
GCAGATGACAGGGGCTGATGCTTGTCTTTCTCCTTTGCATTTCACTGAAA
TGGTAGACAGCGCTACGGATTCAGGAGTAGACAACGAAAATGCCTTGCAG
CAGAGGTCGAACTTCATCGACATTCTCGAGGTGAGGGGGGGTTGTATTGT
AGTCTGTGAGAGGGAAGGAAGAGCAGTTTGAGCGAAGCACACGGTACCCC
CGCTGGGTTTTCTAGCTGTTGCTGGCCAGGTCTTGCTATCATAGTTATGT
GCATGTGGATTTGGGGTAGGGTATTTTACCTTGAAGTTGCACGTGATGTT
TGGTCCCTGTTAACCACATTTACAGAAAGAAGCTAAACTCCAGCACCACT
CTCCCTGCAGCAGCACCCTTCCTGCAACAGCACCCTCCTGCAATAGTACC
CTGCCTGCAGCAGCCCCATCCCTGGAAAAGCATCTTCCCTGAAGAGGATG
CTTTTCCGAGTTCCCTCTCTGTGGTACCAAGTGCCTCAGAGGTATAGATA
GGCACGGATCCATCTGCCTTGTCCTGGGTTAAGAGATGATATGTTGCAGC
CACATGTTGCAGCCTGTTAGTAGTTTGTTGCAAATGCTCAGTAGGGGGCG
CACAACTGAAAACCTTCGACATGAAGTATGAAGTTGGGAGAGCTCAACTG
GTCGCTCACCAGCAATTGCAGTTTGAGAAAAGTTTGAGCGTGTATCAAGT
TTCCCCACAATGACCCTCCACAGCAATCGCGCACAGGCCTACCCATACGT
AGCCTGAGGGGTGGGTAAGATCAACCTGTCGACGGTGTAGGGCGCAACTG
CTGCTTCTGTAATTGGCATTTTTTCTTTGTACCTGCAGCGAACAGAACGT
TGAGAGGTTGAGAGGTTGTTGCGGTTGTTGCAGCTTCAAATTGACTGCAG
CCTACGGGGTGTTTGACGCTTTCAGCAAAGAGTAACATCGTTTCCCCCCC
CCCCCCCCTCCCCATCTCCGCTCTACTCCATCGTTGCCGCACGCAAAAAA
TGTCTCAGCATCTGGACCCGCTGCCTGACTTACCTGACACTAACGAGGGC
TTCTTCAACAGAGATCTCGATTTCCAATATCCCACCGCTCCCGTTGAAAA
CCCATTCCCTACATGGGGCAACGTTAGCAGCACAAATTTAGCTGCCATGA
GCGCGACCGCTGCCGCGGCATCGACCGCCACACCAGCCGTCATGGCAACA
CCAATGATCACCTCGACTTCCGTGACGGGCATGGTCGATTCGACACCATT
GCCATGCCCAAATCCGCGCCCGTTATTGTCGGAGCCAATACACGCGGTGC
CGTACGCCCCCCCCGTCGCTAGCGCTGCCGCTGGTATTTGCTCACCACCC
GAACGACATGTCTTCCTTCGACAGCGCCTTGGCGGCGAGAGTGTTTCGTC
GGGAAACTCATCCACGAGCACGTCTTCGGACACCGGGTCGGCGAGCGATG
ACGCAACACTCGCGGGGGAATGGGAATCCCGTCGCGGGGTAGCCGGCGGT
GGCGTAGCCAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5097:6891..8452-

>mRNA_H-paniculata_contig5097.12385.1 ID=mRNA_H-paniculata_contig5097.12385.1|Name=mRNA_H-paniculata_contig5097.12385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at H-paniculata_contig5097:6891..8452- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCGTACTAACACGCTCGAACCTTCCACTAGGCCACCCCCCTACAC
GCAGATGACAGGGGCTGATGCTTGTCTTTCTCCTTTGCATTTCACTGAAA
TGGTAGACAGCGCTACGGATTCAGGAGTAGACAACGAAAATGCCTTGCAG
CAGAGGTCGAACTTCATCGACATTCTCGAGATGAACCGTACTAACACGCT
CGAACCTTCCACTAGGCCACCCCCCTACACGCAGATGACAGGGGCTGATG
CTTGTCTTTCTCCTTTGCATTTCACTGAAATGGTAGACAGCGCTACGGAT
TCAGGAGTAGACAACGAAAATGCCTTGCAGCAGAGGTCGAACTTCATCGA
CATTCTCGAGCATCTGGACCCGCTGCCTGACTTACCTGACACTAACGAGG
GCTTCTTCAACAGAGATCTCGATTTCCAATATCCCACCGCTCCCGTTGAA
AACCCATTCCCTACATGGGGCAACGTTAGCAGCACAAATTTAGCTGCCAT
GAGCGCGACCGCTGCCGCGGCATCGACCGCCACACCAGCCGTCATGGCAA
CACCAATGATCACCTCGACTTCCGTGACGGGCATGGTCGATTCGACACCA
TTGCCATGCCCAAATCCGCGCCCGTTATTGTCGGAGCCAATACACGCGGT
GCCGTACGCCCCCCCCGTCGCTAGCGCTGCCGCTGGTATTTGCTCACCAC
CCGAACGACATGTCTTCCTTCGACAGCGCCTTGGCGGCGAGAGTGTTTCG
TCGGGAAACTCATCCACGAGCACGTCTTCGGACACCGGGTCGGCGAGCGA
TGACGCAACACTCGCGGGGGAATGGGAATCCCGTCGCGGGGTAGCCGGCG
GTGGCGTAGCCAGACATCTGGACCCGCTGCCTGACTTACCTGACACTAAC
GAGGGCTTCTTCAACAGAGATCTCGATTTCCAATATCCCACCGCTCCCGT
TGAAAACCCATTCCCTACATGGGGCAACGTTAGCAGCACAAATTTAGCTG
CCATGAGCGCGACCGCTGCCGCGGCATCGACCGCCACACCAGCCGTCATG
GCAACACCAATGATCACCTCGACTTCCGTGACGGGCATGGTCGATTCGAC
ACCATTGCCATGCCCAAATCCGCGCCCGTTATTGTCGGAGCCAATACACG
CGGTGCCGTACGCCCCCCCCGTCGCTAGCGCTGCCGCTGGTATTTGCTCA
CCACCCGAACGACATGTCTTCCTTCGACAGCGCCTTGGCGGCGAGAGTGT
TTCGTCGGGAAACTCATCCACGAGCACGTCTTCGGACACCGGGTCGGCGA
GCGATGACGCAACACTCGCGGGGGAATGGGAATCCCGTCGCGGGGTAGCC
GGCGGTGGCGTAGCCAGA
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