mRNA_H-paniculata_contig11945.1238.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11945.1238.1
Unique NamemRNA_H-paniculata_contig11945.1238.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Match: A0A6H5KCI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI7_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 2.150e-41
Identity = 89/197 (45.18%), Postives = 118/197 (59.90%), Query Frame = 1
Query:   13 WGPGGRTLWKDLCMSFFLLTKSCEMFAESGNPIHPTYRLRRSDVAFYQGQAQLSRNSWGNADRVEIRFRAAKSDQSRKGAVVTRLR--TGAPRS-FRRRGGAVALVAEILLDTSSFPSDAPFMAYGETDGKMLVWNRDEAVIALRKMVVLAGLPPAEFALHSLRTGGI-THSSAAEVPPEVLQKEGRWRSNAYKNYV 591
            WG  GR  W  L +S+F +T+S EMFA S   +HP + L R DVAF++G  QL    W  ADRVEIRFR  K DQ + G V  R R     PRS +R  GGAVAL+   L   ++ P  AP  +Y  +  ++ V   D+A+ ALR++V  +G  P +FALHSLR GG  T ++   V   V+Q+EGRW+S+AYK Y 
Sbjct:  230 WGLAGRVTWLCLSLSYFFITRSDEMFANSSGVVHPVHCLTRRDVAFFRGSRQLEYMHWQQADRVEIRFRGHKGDQGQIGDVRARTRDEVHGPRSGYRANGGAVALMVASLSCHATLPDSAPLSSY-RSGQEVKVLKYDQALRALREIVERSGRNPKDFALHSLRIGGASTLAAGGAVSERVIQREGRWKSDAYKVYT 425          
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Match: A0A6H5K312_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K312_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.360e-24
Identity = 65/193 (33.68%), Postives = 103/193 (53.37%), Query Frame = 1
Query:   16 GPGGRTLWKDLCMSFFLLTKSCEMFAESGNPIHPTYRLRRSDVAFYQGQAQLSRNSWGNADRVEIRFRAAKSDQSRKGAVVTRLRTGAPRSFRRRGGAVALVAEILLDTSSFPSDAPFMAYGETDGKMLVWNRDEAVIALRKMVVLAGLPPAEFALHSLRTGGITHSSAAEVPPEVLQKEGRWRSNAYKNYVR 594
            G  G+ +W  L +S+ L+ ++ E++A+    +H  + L R D+ F+ G  +++      A RVE+ FRA+K+DQ R GA VT           R G A+ ++ ++L       S AP M     D +  V +R EA   LR +V  AG  P ++ALHS+R GG TH ++       +Q+ GRW+ +A+  YVR
Sbjct:  457 GESGKLIWCGLALSYLLMCRASEIWADDSGLVHSDFCLTRGDLGFFCGPVRVAWADRRQASRVEVTFRASKADQKRLGATVT-----------RSGEALKVLLDLLDLHPELGSHAPLMQSWAQD-RWKVISRAEASRHLRLLVSAAGRDPQKYALHSVRIGGATHLASMGASVIQIQRAGRWKPSAFMVYVR 637          
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Match: A0A6H5JRM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRM8_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 5.400e-19
Identity = 66/196 (33.67%), Postives = 97/196 (49.49%), Query Frame = 1
Query:   10 GWGP-GGRTLWKDLCMSFFLLTKSCEMFAESGNPIHPTYRLRRSDVAFYQGQAQLSRNSWGNADRVEIRFRAAKSDQSRKGAVVTRLRTGAPRSFRRRGGAVALVAEILLDTSSFPSDAPFMAYGETDGKMLVWNRDEAVIALRKMVVLAGLPPAEFALHSLRTGGITHSSAAEVPPEVLQKEGRWRSNAYKNYVR 594
            G+GP   R  W   C S        E++A+    +H  + L R D+ F+ G  +++     +A RVE+ FRA+K+DQ R GA VT           R G A+ ++ ++L       S AP M     D +  V +R E    LR +V  AG  P ++ALHS R GG TH +        +Q+ GRW+S+A+  YVR
Sbjct:   57 GFGPVTPRERWGGKCAS--------EIWADDSGLVHSEFCLIRGDLGFFFGPVRVAWADRRHASRVEVTFRASKTDQKRLGATVT-----------RSGEALKVLLDLLDLHPELGSHAPLMQSWAQD-RWKVISRAETSRHLRLLVSAAGRDPQKYALHSGRIGGGTHLAIMGASVIQIQRAGRWKSSAFMVYVR 232          
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Match: UPI001E1D607E (uncharacterized protein LOC123544660 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D607E)

HSP 1 Score: 59.3 bits (142), Expect = 6.050e-7
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 1
Query:  433 LRKMVVLAGLPPAEFALHSLRTGGITHSSAAEVPPEVLQKEGRWRSNAYKNYVR 594
            LRK +   GL P E+  HS R GG TH+   +V P  LQ  GRW+S+AYK Y+R
Sbjct:  397 LRKCISYIGLNPQEYTPHSFRIGGATHAYNLQVTPHQLQALGRWKSSAYKKYIR 450          
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Match: A0A6J8A3T2_MYTCO (Tyr recombinase domain-containing protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8A3T2_MYTCO)

HSP 1 Score: 57.0 bits (136), Expect = 1.370e-6
Identity = 44/160 (27.50%), Postives = 74/160 (46.25%), Query Frame = 1
Query:  127 LRRSDVAFYQGQA----QLSRNSWGNADRVEIRFRAAKSDQSRKGAVVTRLRTGAPRSFRRRGGAVALVAEILLDTSSFPSDAPFMAYGETDGKMLVWNRDEAVIALRKMVVLAGLPPAEFALHSLRTGGITHSSAAEVPPEVLQKEGRWRSNAYKNYVR 594
            LR  ++A   G++     +S  SW +   + IR  ++K+DQ   GA++T      P S         L+   L+D    P       + + +G  +   R + +  L+K +   G+    ++ HS R G  T  S   VP  ++ + GRW+SNAYK Y+R
Sbjct:   56 LRIGELAVSNGKSAHIISISDVSWSSFGVLNIRVPSSKTDQLGTGALITL--QSQPNS---ETCPCKLIKSFLVDRPPLPG----ALFCQDNGAAV--TRYQFITVLKKSMERVGVNYKNYSSHSFRIGCATSLSLGGVPDAIIMQLGRWKSNAYKTYIR 204          
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Match: A0A662WJX6_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WJX6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.410e-6
Identity = 50/192 (26.04%), Postives = 79/192 (41.15%), Query Frame = 1
Query:   19 PGGRTLWKDLCMSFFLLTKSCEMFAESGNPIHPTYRLRRSDVAFYQGQAQLSRNSWGNADRVEIRFRAAKSDQSRKGAVVTRLRTGAPRSFRRRGGAVALVAEILLDTSSFPSDAPFMAYGETDGKMLVWNRDEAVIA--LRKMVVLAGLPPAEFALHSLRTGGITHSSAAEVPPEVLQKEGRWRSNAYKNY 588
            P  R LW  + + FF L +  E            Y L+  +V F   +    R    NA  V I    AK+DQ  +GA  T  ++G       R        + ++D  +          G+ + K L  +   + +A  L++    AG+PP  +A HSLR GG T   + +     ++  GRW S  Y++Y
Sbjct:  726 PQHRLLWGSVLLGFFFLLRRSEYLVVGRR--RAFYCLKAKNVMFTDARGNQVRRQ--NATSVTIGLEGAKNDQFGRGAWRTMHKSG------DRSLCPVRALKHIMDARN--------KLGKKESKYLCLDLKSSTVANALKQTASGAGVPPVNYATHSLRIGGATALLSGKADSLSIKLLGRWVSRCYEDY 899          
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Match: A0A1X7TJP6_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TJP6_AMPQE)

HSP 1 Score: 53.9 bits (128), Expect = 2.040e-5
Identity = 53/190 (27.89%), Postives = 78/190 (41.05%), Query Frame = 1
Query:   28 RTLWKDLCMS-FFLLTKSCEMFAESGNPIHPTYRLRRSDVAFYQGQAQLSRNSWGNADRVEIRFRAAKSDQSRKGAVVTRLRTGAPRSFRRRGGAVALVAEILLDTSSFPSDAPFMAYGETDGKMLVWNRDEAVIALRKMVVLAGLPPAEFALHSLRTGGITHSSAAEVPPEVLQKEGRWRSNAYKNYVR 594
            R+LW  + ++ FF   +S E+    G    P   L   D+A              + + + +    +K+DQ R+G  +   RT A          V+ + + L+     P  A FM  GE         R   V  + +    AGLP   FA HS   G  T +SA  V    +Q  GRW+S A+K YVR
Sbjct:   35 RSLWWAVALTAFFGFCRSGEITVPQGRVYDPQVHLSFRDLAVDNSL---------HPNVISLLLHCSKTDQERRGVRIILGRTDADLC------PVSALLKYLVHRGRGPG-ALFMLDGEP------LERTRLVEEVCRTHTRAGLPAGNFAGHSFHIGAATTASAIGVEDSTIQTLGRWKSAAFKLYVR 202          
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Match: UPI00109FAED7 (uncharacterized protein LOC114597557 n=1 Tax=Podarcis muralis TaxID=64176 RepID=UPI00109FAED7)

HSP 1 Score: 54.3 bits (129), Expect = 3.320e-5
Identity = 39/136 (28.68%), Postives = 66/136 (48.53%), Query Frame = 1
Query:  202 VEIRFRAAKSDQSRKGAVVTRLRTGAPRSFRRRGGAVALVAEILLDTSSF-----PSDAPFMAYGETDGKMLVWNRDEAVIALRKMVVLAGLPPAEFALHSLRTGGITHSSAAEVPPEVLQKEGRWRSNAYKNYVR 594
            ++++ R +K+DQ  +G+ ++        S    G         + DT  F     P   P + +    G+ +   R + V  LRK +   G  PA+F+ HS R G  T ++A+ +P E ++  GRWRS A+K Y+R
Sbjct:  456 IQVKIRTSKTDQLGRGSTLSLA------SSPHTGPCP------VADTRKFLKVRPPGPGPLLIHAS--GRPM--TRCQFVSILRKAIHACGGDPAQFSGHSFRIGAATTAAASGLPAEHIKTMGRWRSAAFKGYIR 575          
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Match: A0A1S1R891_9ACTN (Integrase n=3 Tax=Frankia TaxID=1854 RepID=A0A1S1R891_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 6.800e-5
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 1
Query:  196 DRVEIRFRAAKSDQSRKGAVVTRLRTGAPRS---FRRRGGAVALVAEILLDTSSFPSDAPFMAYGETDGKMLVWNRDEAVIALRKMVVLAGLPPAEFALHSLRTGGITHSSAAEVPPEVLQKEGRWRSNA-YKNYVR 594
            D + +  R +K+DQ   GA V  L  G+ R     R   G VA  A   +  +  P+      +G+  G + +++   A I  R+ V  AGL PA+FA HSLR+G  T ++ A V    + ++GRWRS A  ++YVR
Sbjct:  204 DGLVVTVRRSKTDQEAAGAQVG-LAYGSYRPTCPVRAWRGWVAAAAGAGVPLAGGPAFRGINRHGQV-GAVRLYSGSVARIVQRR-VAAAGLDPADFAGHSLRSGFATAAARAGVTDRSIMRQGRWRSAASLESYVR 337          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KCI7_9PHAE2.150e-4145.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K312_9PHAE3.360e-2433.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRM8_9PHAE5.400e-1933.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001E1D607E6.050e-750.00uncharacterized protein LOC123544660 n=1 Tax=Merce... [more]
A0A6J8A3T2_MYTCO1.370e-627.50Tyr recombinase domain-containing protein n=1 Tax=... [more]
A0A662WJX6_9STRA2.410e-626.04Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A1X7TJP6_AMPQE2.040e-527.89Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
UPI00109FAED73.320e-528.68uncharacterized protein LOC114597557 n=1 Tax=Podar... [more]
A0A1S1R891_9ACTN6.800e-534.31Integrase n=3 Tax=Frankia TaxID=1854 RepID=A0A1S1R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11945contigH-paniculata_contig11945:4129..4722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue6.6e-09
Seed eggNOG ortholog67593.Physo139296
Hectar predicted targeting categoryother localisation
EggNOG OGs2995D@1,2RG6Y@2759,3QHSP@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size594
Cds size594
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928910.3813312-CDS-H-paniculata_contig11945:4128..47221622928910.3813312-CDS-H-paniculata_contig11945:4128..4722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11945 4129..4722 -
1691480664.0353408-CDS-H-paniculata_contig11945:4128..47221691480664.0353408-CDS-H-paniculata_contig11945:4128..4722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11945 4129..4722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11945.1238.1prot_H-paniculata_contig11945.1238.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11945 4129..4722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11945.1238.1

>prot_H-paniculata_contig11945.1238.1 ID=prot_H-paniculata_contig11945.1238.1|Name=mRNA_H-paniculata_contig11945.1238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=198bp
MSFGWGPGGRTLWKDLCMSFFLLTKSCEMFAESGNPIHPTYRLRRSDVAF
YQGQAQLSRNSWGNADRVEIRFRAAKSDQSRKGAVVTRLRTGAPRSFRRR
GGAVALVAEILLDTSSFPSDAPFMAYGETDGKMLVWNRDEAVIALRKMVV
LAGLPPAEFALHSLRTGGITHSSAAEVPPEVLQKEGRWRSNAYKNYVR
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mRNA from alignment at H-paniculata_contig11945:4129..4722-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11945.1238.1 ID=mRNA_H-paniculata_contig11945.1238.1|Name=mRNA_H-paniculata_contig11945.1238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=594bp|location=Sequence derived from alignment at H-paniculata_contig11945:4129..4722- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTTCGGGTGGGGCCCGGGCGGCCGAACACTGTGGAAGGACTTGTG TATGTCATTCTTCCTGCTAACGAAATCGTGCGAAATGTTTGCAGAGTCCG GTAATCCAATCCACCCGACATATCGTCTTCGCAGGAGTGACGTAGCCTTT TATCAGGGGCAAGCGCAGCTGAGCAGAAATTCATGGGGTAATGCAGATAG GGTGGAGATTCGCTTTCGAGCGGCCAAAAGTGATCAATCCCGGAAGGGGG CGGTGGTGACTCGCCTTCGTACAGGGGCCCCGCGATCATTTCGGCGTCGG GGCGGAGCGGTAGCTTTGGTGGCAGAAATTCTGTTGGACACGTCTTCGTT CCCCTCTGATGCCCCGTTTATGGCCTATGGAGAAACCGATGGTAAGATGT TGGTATGGAATCGGGATGAGGCAGTGATTGCACTGCGAAAAATGGTGGTG TTGGCTGGGCTTCCGCCGGCAGAGTTTGCGTTGCATTCACTGCGAACTGG TGGCATCACGCATTCGTCCGCAGCGGAGGTACCGCCGGAAGTATTGCAGA AGGAAGGGAGGTGGAGGTCGAATGCTTACAAAAACTATGTTCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig11945:4129..4722-

>mRNA_H-paniculata_contig11945.1238.1 ID=mRNA_H-paniculata_contig11945.1238.1|Name=mRNA_H-paniculata_contig11945.1238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1188bp|location=Sequence derived from alignment at H-paniculata_contig11945:4129..4722- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTTCGGGTGGGGCCCGGGCGGCCGAACACTGTGGAAGGACTTGTG
TATGTCATTCTTCCTGCTAACGAAATCGTGCGAAATGTTTGCAGAGTCCG
GTAATCCAATCCACCCGACATATCGTCTTCGCAGGAGTGACGTAGCCTTT
TATCAGGGGCAAGCGCAGCTGAGCAGAAATTCATGGGGTAATGCAGATAG
GGTGGAGATTCGCTTTCGAGCGGCCAAAAGTGATCAATCCCGGAAGGGGG
CGGTGGTGACTCGCCTTCGTACAGGGGCCCCGCGATCATTTCGGCGTCGG
GGCGGAGCGGTAGCTTTGGTGGCAGAAATTCTGTTGGACACGTCTTCGTT
CCCCTCTGATGCCCCGTTTATGGCCTATGGAGAAACCGATGGTAAGATGT
TGGTATGGAATCGGGATGAGGCAGTGATTGCACTGCGAAAAATGGTGGTG
TTGGCTGGGCTTCCGCCGGCAGAGTTTGCGTTGCATTCACTGCGAACTGG
TGGCATCACGCATTCGTCCGCAGCGGAGGTACCGCCGGAAGTATTGCAGA
AGGAAGGGAGGTGGAGGTCGAATGCTTACAAAAACTATGTTCGCATGTCG
TTCGGGTGGGGCCCGGGCGGCCGAACACTGTGGAAGGACTTGTGTATGTC
ATTCTTCCTGCTAACGAAATCGTGCGAAATGTTTGCAGAGTCCGGTAATC
CAATCCACCCGACATATCGTCTTCGCAGGAGTGACGTAGCCTTTTATCAG
GGGCAAGCGCAGCTGAGCAGAAATTCATGGGGTAATGCAGATAGGGTGGA
GATTCGCTTTCGAGCGGCCAAAAGTGATCAATCCCGGAAGGGGGCGGTGG
TGACTCGCCTTCGTACAGGGGCCCCGCGATCATTTCGGCGTCGGGGCGGA
GCGGTAGCTTTGGTGGCAGAAATTCTGTTGGACACGTCTTCGTTCCCCTC
TGATGCCCCGTTTATGGCCTATGGAGAAACCGATGGTAAGATGTTGGTAT
GGAATCGGGATGAGGCAGTGATTGCACTGCGAAAAATGGTGGTGTTGGCT
GGGCTTCCGCCGGCAGAGTTTGCGTTGCATTCACTGCGAACTGGTGGCAT
CACGCATTCGTCCGCAGCGGAGGTACCGCCGGAAGTATTGCAGAAGGAAG
GGAGGTGGAGGTCGAATGCTTACAAAAACTATGTTCGC
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