mRNA_H-paniculata_contig50908.12379.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50908.12379.1
Unique NamemRNA_H-paniculata_contig50908.12379.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig50908.12379.1 vs. uniprot
Match: A0A6H5L9L5_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9L5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.790e-19
Identity = 42/57 (73.68%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    7 DTQFFDAWNPDLKPKRRAAFVKEMVRGATSALAFMHEAGVVHRSLGAPSLRMNTLGE 177
            +++ FDA+NP  + KRRAAFVK+M+RGAT+ALAFMHE+GVVHRSLGAPSLR+NTL E
Sbjct:  231 ESELFDAFNPTARTKRRAAFVKQMMRGATNALAFMHESGVVHRSLGAPSLRVNTLDE 287
[Close]
BLAST of mRNA_H-paniculata_contig50908.12379.1 vs. uniprot
Match: A0A5J4Z0Z3_PORPP (Calcium/calmodulin-dependent protein kinase type 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0Z3_PORPP)

HSP 1 Score: 49.3 bits (116), Expect = 4.920e-5
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:   16 FFDAWNPDLKPKRRAAFVKEMVRGATSALAFMHEAGVVHRSLGAPSLRMNTLGES 180
            + D   PDL  +R+  F+ +++  A  A+ F+H+ G+VHRSLG  SL +NTL E+
Sbjct:  220 YLDFVFPDLAFRRKKLFLIKLISEALEAVGFLHDRGIVHRSLGPASLLVNTLDET 274
[Close]
BLAST of mRNA_H-paniculata_contig50908.12379.1 vs. uniprot
Match: A0A7S0F1J5_9CRYP (Hypothetical protein n=2 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F1J5_9CRYP)

HSP 1 Score: 48.9 bits (115), Expect = 6.800e-5
Identity = 25/68 (36.76%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:   16 FFDAWNPDLKPKRRA-----AFVKEMVRGATSALAFMHEAGVVHRSLGAPSLRMNTLGESDVAMLRRN 204
            F+D  N  +  +R A     A++K +++ + SAL F+HE G+VHRSLG+ S+ ++T+  ++V  L+ N
Sbjct:  243 FWDKLNQPVFGRRDAKETKFAYLKRLMKESVSALVFLHERGIVHRSLGSSSISLSTIEFTEVNQLQVN 310
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50908.12379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L9L5_9PHAE1.790e-1973.68Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A5J4Z0Z3_PORPP4.920e-541.82Calcium/calmodulin-dependent protein kinase type 1... [more]
A0A7S0F1J5_9CRYP6.800e-536.76Hypothetical protein n=2 Tax=Hanusia phi TaxID=303... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50908contigH-paniculata_contig50908:314..532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue5e-15
Seed eggNOG ortholog2880.D8LSY5
Hectar predicted targeting categoryother localisation
EggNOG OGs28J07@1,2QRC4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size219
Cds size219
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930493.1103463-CDS-H-paniculata_contig50908:313..5321622930493.1103463-CDS-H-paniculata_contig50908:313..532Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50908 314..532 +
1691481316.9999316-CDS-H-paniculata_contig50908:313..5321691481316.9999316-CDS-H-paniculata_contig50908:313..532Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50908 314..532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50908.12379.1prot_H-paniculata_contig50908.12379.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50908 314..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50908.12379.1

>prot_H-paniculata_contig50908.12379.1 ID=prot_H-paniculata_contig50908.12379.1|Name=mRNA_H-paniculata_contig50908.12379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MDDTQFFDAWNPDLKPKRRAAFVKEMVRGATSALAFMHEAGVVHRSLGAP
SLRMNTLGESDVAMLRRNHLPL*
back to top

mRNA from alignment at H-paniculata_contig50908:314..532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50908.12379.1 ID=mRNA_H-paniculata_contig50908.12379.1|Name=mRNA_H-paniculata_contig50908.12379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig50908:314..532+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGACACGCAGTTCTTTGACGCCTGGAATCCCGACCTGAAGCCGAA
GAGGAGAGCAGCGTTCGTCAAGGAGATGGTGCGTGGAGCCACGAGCGCCT
TGGCGTTCATGCACGAGGCGGGTGTCGTTCACAGGTCGCTGGGCGCACCT
AGTCTACGCATGAACACTCTGGGTGAGAGTGATGTCGCGATGTTGCGGCG
AAATCACCTTCCGTTATAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig50908:314..532+

>mRNA_H-paniculata_contig50908.12379.1 ID=mRNA_H-paniculata_contig50908.12379.1|Name=mRNA_H-paniculata_contig50908.12379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig50908:314..532+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGACACGCAGTTCTTTGACGCCTGGAATCCCGACCTGAAGCCGAA
GAGGAGAGCAGCGTTCGTCAAGGAGATGGTGCGTGGAGCCACGAGCGCCT
TGGCGTTCATGCACGAGGCGGGTGTCGTTCACAGGTCGCTGGGCGCACCT
AGTCTACGCATGAACACTCTGGGTGAGAGTGATGTCGCGATGTTGCGGCG
AAATCACCTTCCGTTATAGATGGACGACACGCAGTTCTTTGACGCCTGGA
ATCCCGACCTGAAGCCGAAGAGGAGAGCAGCGTTCGTCAAGGAGATGGTG
CGTGGAGCCACGAGCGCCTTGGCGTTCATGCACGAGGCGGGTGTCGTTCA
CAGGTCGCTGGGCGCACCTAGTCTACGCATGAACACTCTGGGTGAGAGTG
ATGTCGCGATGTTGCGGCGAAATCACCTTCCGTTATAG
back to top