mRNA_H-paniculata_contig11945.1238.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Match: A0A6H5KCI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI7_9PHAE) HSP 1 Score: 154 bits (390), Expect = 2.150e-41 Identity = 89/197 (45.18%), Postives = 118/197 (59.90%), Query Frame = 1 Query: 13 WGPGGRTLWKDLCMSFFLLTKSCEMFAESGNPIHPTYRLRRSDVAFYQGQAQLSRNSWGNADRVEIRFRAAKSDQSRKGAVVTRLR--TGAPRS-FRRRGGAVALVAEILLDTSSFPSDAPFMAYGETDGKMLVWNRDEAVIALRKMVVLAGLPPAEFALHSLRTGGI-THSSAAEVPPEVLQKEGRWRSNAYKNYV 591 WG GR W L +S+F +T+S EMFA S +HP + L R DVAF++G QL W ADRVEIRFR K DQ + G V R R PRS +R GGAVAL+ L ++ P AP +Y + ++ V D+A+ ALR++V +G P +FALHSLR GG T ++ V V+Q+EGRW+S+AYK Y Sbjct: 230 WGLAGRVTWLCLSLSYFFITRSDEMFANSSGVVHPVHCLTRRDVAFFRGSRQLEYMHWQQADRVEIRFRGHKGDQGQIGDVRARTRDEVHGPRSGYRANGGAVALMVASLSCHATLPDSAPLSSY-RSGQEVKVLKYDQALRALREIVERSGRNPKDFALHSLRIGGASTLAAGGAVSERVIQREGRWKSDAYKVYT 425
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Match: A0A6H5K312_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K312_9PHAE) HSP 1 Score: 109 bits (272), Expect = 3.360e-24 Identity = 65/193 (33.68%), Postives = 103/193 (53.37%), Query Frame = 1 Query: 16 GPGGRTLWKDLCMSFFLLTKSCEMFAESGNPIHPTYRLRRSDVAFYQGQAQLSRNSWGNADRVEIRFRAAKSDQSRKGAVVTRLRTGAPRSFRRRGGAVALVAEILLDTSSFPSDAPFMAYGETDGKMLVWNRDEAVIALRKMVVLAGLPPAEFALHSLRTGGITHSSAAEVPPEVLQKEGRWRSNAYKNYVR 594 G G+ +W L +S+ L+ ++ E++A+ +H + L R D+ F+ G +++ A RVE+ FRA+K+DQ R GA VT R G A+ ++ ++L S AP M D + V +R EA LR +V AG P ++ALHS+R GG TH ++ +Q+ GRW+ +A+ YVR Sbjct: 457 GESGKLIWCGLALSYLLMCRASEIWADDSGLVHSDFCLTRGDLGFFCGPVRVAWADRRQASRVEVTFRASKADQKRLGATVT-----------RSGEALKVLLDLLDLHPELGSHAPLMQSWAQD-RWKVISRAEASRHLRLLVSAAGRDPQKYALHSVRIGGATHLASMGASVIQIQRAGRWKPSAFMVYVR 637
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Match: A0A6H5JRM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRM8_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 5.400e-19 Identity = 66/196 (33.67%), Postives = 97/196 (49.49%), Query Frame = 1 Query: 10 GWGP-GGRTLWKDLCMSFFLLTKSCEMFAESGNPIHPTYRLRRSDVAFYQGQAQLSRNSWGNADRVEIRFRAAKSDQSRKGAVVTRLRTGAPRSFRRRGGAVALVAEILLDTSSFPSDAPFMAYGETDGKMLVWNRDEAVIALRKMVVLAGLPPAEFALHSLRTGGITHSSAAEVPPEVLQKEGRWRSNAYKNYVR 594 G+GP R W C S E++A+ +H + L R D+ F+ G +++ +A RVE+ FRA+K+DQ R GA VT R G A+ ++ ++L S AP M D + V +R E LR +V AG P ++ALHS R GG TH + +Q+ GRW+S+A+ YVR Sbjct: 57 GFGPVTPRERWGGKCAS--------EIWADDSGLVHSEFCLIRGDLGFFFGPVRVAWADRRHASRVEVTFRASKTDQKRLGATVT-----------RSGEALKVLLDLLDLHPELGSHAPLMQSWAQD-RWKVISRAETSRHLRLLVSAAGRDPQKYALHSGRIGGGTHLAIMGASVIQIQRAGRWKSSAFMVYVR 232
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Match: UPI001E1D607E (uncharacterized protein LOC123544660 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D607E) HSP 1 Score: 59.3 bits (142), Expect = 6.050e-7 Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 1 Query: 433 LRKMVVLAGLPPAEFALHSLRTGGITHSSAAEVPPEVLQKEGRWRSNAYKNYVR 594 LRK + GL P E+ HS R GG TH+ +V P LQ GRW+S+AYK Y+R Sbjct: 397 LRKCISYIGLNPQEYTPHSFRIGGATHAYNLQVTPHQLQALGRWKSSAYKKYIR 450
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Match: A0A6J8A3T2_MYTCO (Tyr recombinase domain-containing protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8A3T2_MYTCO) HSP 1 Score: 57.0 bits (136), Expect = 1.370e-6 Identity = 44/160 (27.50%), Postives = 74/160 (46.25%), Query Frame = 1 Query: 127 LRRSDVAFYQGQA----QLSRNSWGNADRVEIRFRAAKSDQSRKGAVVTRLRTGAPRSFRRRGGAVALVAEILLDTSSFPSDAPFMAYGETDGKMLVWNRDEAVIALRKMVVLAGLPPAEFALHSLRTGGITHSSAAEVPPEVLQKEGRWRSNAYKNYVR 594 LR ++A G++ +S SW + + IR ++K+DQ GA++T P S L+ L+D P + + +G + R + + L+K + G+ ++ HS R G T S VP ++ + GRW+SNAYK Y+R Sbjct: 56 LRIGELAVSNGKSAHIISISDVSWSSFGVLNIRVPSSKTDQLGTGALITL--QSQPNS---ETCPCKLIKSFLVDRPPLPG----ALFCQDNGAAV--TRYQFITVLKKSMERVGVNYKNYSSHSFRIGCATSLSLGGVPDAIIMQLGRWKSNAYKTYIR 204
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Match: A0A662WJX6_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WJX6_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 2.410e-6 Identity = 50/192 (26.04%), Postives = 79/192 (41.15%), Query Frame = 1 Query: 19 PGGRTLWKDLCMSFFLLTKSCEMFAESGNPIHPTYRLRRSDVAFYQGQAQLSRNSWGNADRVEIRFRAAKSDQSRKGAVVTRLRTGAPRSFRRRGGAVALVAEILLDTSSFPSDAPFMAYGETDGKMLVWNRDEAVIA--LRKMVVLAGLPPAEFALHSLRTGGITHSSAAEVPPEVLQKEGRWRSNAYKNY 588 P R LW + + FF L + E Y L+ +V F + R NA V I AK+DQ +GA T ++G R + ++D + G+ + K L + + +A L++ AG+PP +A HSLR GG T + + ++ GRW S Y++Y Sbjct: 726 PQHRLLWGSVLLGFFFLLRRSEYLVVGRR--RAFYCLKAKNVMFTDARGNQVRRQ--NATSVTIGLEGAKNDQFGRGAWRTMHKSG------DRSLCPVRALKHIMDARN--------KLGKKESKYLCLDLKSSTVANALKQTASGAGVPPVNYATHSLRIGGATALLSGKADSLSIKLLGRWVSRCYEDY 899
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Match: A0A1X7TJP6_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TJP6_AMPQE) HSP 1 Score: 53.9 bits (128), Expect = 2.040e-5 Identity = 53/190 (27.89%), Postives = 78/190 (41.05%), Query Frame = 1 Query: 28 RTLWKDLCMS-FFLLTKSCEMFAESGNPIHPTYRLRRSDVAFYQGQAQLSRNSWGNADRVEIRFRAAKSDQSRKGAVVTRLRTGAPRSFRRRGGAVALVAEILLDTSSFPSDAPFMAYGETDGKMLVWNRDEAVIALRKMVVLAGLPPAEFALHSLRTGGITHSSAAEVPPEVLQKEGRWRSNAYKNYVR 594 R+LW + ++ FF +S E+ G P L D+A + + + + +K+DQ R+G + RT A V+ + + L+ P A FM GE R V + + AGLP FA HS G T +SA V +Q GRW+S A+K YVR Sbjct: 35 RSLWWAVALTAFFGFCRSGEITVPQGRVYDPQVHLSFRDLAVDNSL---------HPNVISLLLHCSKTDQERRGVRIILGRTDADLC------PVSALLKYLVHRGRGPG-ALFMLDGEP------LERTRLVEEVCRTHTRAGLPAGNFAGHSFHIGAATTASAIGVEDSTIQTLGRWKSAAFKLYVR 202
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Match: UPI00109FAED7 (uncharacterized protein LOC114597557 n=1 Tax=Podarcis muralis TaxID=64176 RepID=UPI00109FAED7) HSP 1 Score: 54.3 bits (129), Expect = 3.320e-5 Identity = 39/136 (28.68%), Postives = 66/136 (48.53%), Query Frame = 1 Query: 202 VEIRFRAAKSDQSRKGAVVTRLRTGAPRSFRRRGGAVALVAEILLDTSSF-----PSDAPFMAYGETDGKMLVWNRDEAVIALRKMVVLAGLPPAEFALHSLRTGGITHSSAAEVPPEVLQKEGRWRSNAYKNYVR 594 ++++ R +K+DQ +G+ ++ S G + DT F P P + + G+ + R + V LRK + G PA+F+ HS R G T ++A+ +P E ++ GRWRS A+K Y+R Sbjct: 456 IQVKIRTSKTDQLGRGSTLSLA------SSPHTGPCP------VADTRKFLKVRPPGPGPLLIHAS--GRPM--TRCQFVSILRKAIHACGGDPAQFSGHSFRIGAATTAAASGLPAEHIKTMGRWRSAAFKGYIR 575
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Match: A0A1S1R891_9ACTN (Integrase n=3 Tax=Frankia TaxID=1854 RepID=A0A1S1R891_9ACTN) HSP 1 Score: 53.1 bits (126), Expect = 6.800e-5 Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 1 Query: 196 DRVEIRFRAAKSDQSRKGAVVTRLRTGAPRS---FRRRGGAVALVAEILLDTSSFPSDAPFMAYGETDGKMLVWNRDEAVIALRKMVVLAGLPPAEFALHSLRTGGITHSSAAEVPPEVLQKEGRWRSNA-YKNYVR 594 D + + R +K+DQ GA V L G+ R R G VA A + + P+ +G+ G + +++ A I R+ V AGL PA+FA HSLR+G T ++ A V + ++GRWRS A ++YVR Sbjct: 204 DGLVVTVRRSKTDQEAAGAQVG-LAYGSYRPTCPVRAWRGWVAAAAGAGVPLAGGPAFRGINRHGQV-GAVRLYSGSVARIVQRR-VAAAGLDPADFAGHSLRSGFATAAARAGVTDRSIMRQGRWRSAASLESYVR 337 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11945.1238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11945.1238.1 >prot_H-paniculata_contig11945.1238.1 ID=prot_H-paniculata_contig11945.1238.1|Name=mRNA_H-paniculata_contig11945.1238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=198bp MSFGWGPGGRTLWKDLCMSFFLLTKSCEMFAESGNPIHPTYRLRRSDVAFback to top mRNA from alignment at H-paniculata_contig11945:4129..4722- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11945.1238.1 ID=mRNA_H-paniculata_contig11945.1238.1|Name=mRNA_H-paniculata_contig11945.1238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=594bp|location=Sequence derived from alignment at H-paniculata_contig11945:4129..4722- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11945:4129..4722- >mRNA_H-paniculata_contig11945.1238.1 ID=mRNA_H-paniculata_contig11945.1238.1|Name=mRNA_H-paniculata_contig11945.1238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1188bp|location=Sequence derived from alignment at H-paniculata_contig11945:4129..4722- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |