mRNA_H-paniculata_contig509.12375.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig509.12375.1
Unique NamemRNA_H-paniculata_contig509.12375.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig509.12375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig509contigH-paniculata_contig509:14659..15612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size569
Cds size471
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig509.12375.1prot_H-paniculata_contig509.12375.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig509 14757..15612 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930492.4831243-UTR-H-paniculata_contig509:14658..147561622930492.4831243-UTR-H-paniculata_contig509:14658..14756Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig509 14659..14756 -
1691481316.67119-UTR-H-paniculata_contig509:14658..147561691481316.67119-UTR-H-paniculata_contig509:14658..14756Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig509 14659..14756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930492.5012398-CDS-H-paniculata_contig509:14756..147921622930492.5012398-CDS-H-paniculata_contig509:14756..14792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig509 14757..14792 -
1691481316.6826968-CDS-H-paniculata_contig509:14756..147921691481316.6826968-CDS-H-paniculata_contig509:14756..14792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig509 14757..14792 -
1622930492.5198295-CDS-H-paniculata_contig509:15177..156121622930492.5198295-CDS-H-paniculata_contig509:15177..15612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig509 15178..15612 -
1691481316.6980176-CDS-H-paniculata_contig509:15177..156121691481316.6980176-CDS-H-paniculata_contig509:15177..15612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig509 15178..15612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig509.12375.1

>prot_H-paniculata_contig509.12375.1 ID=prot_H-paniculata_contig509.12375.1|Name=mRNA_H-paniculata_contig509.12375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
QQQQQAQQQLQPGCFVKSSQAFSPLFYDDGDFFPEGDTLRGESFSPPLSP
SIVTHFTGAAARLEVIPESLRRASVGGALDAASASAGGAGATPTISGEEG
GEARRSSTSGCEHELPSKPHRQNSYSPPIDSGSMKNSGVVASQIQGLKSP
QPRSGS*
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mRNA from alignment at H-paniculata_contig509:14659..15612-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig509.12375.1 ID=mRNA_H-paniculata_contig509.12375.1|Name=mRNA_H-paniculata_contig509.12375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=954bp|location=Sequence derived from alignment at H-paniculata_contig509:14659..15612- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACAACAACAGCAAGCCCAACAGCAGTTGCAGCCAGGTTGTTTCGTCAA
ATCATCGCAGGCTTTCTCTCCCTTGTTCTATGACGACGGTGACTTCTTTC
CTGAGGGAGACACTCTACGGGGAGAATCGTTTTCCCCGCCATTATCTCCG
TCAATAGTGACCCATTTCACCGGCGCAGCTGCCCGATTGGAGGTCATCCC
CGAGTCCCTACGCCGTGCGTCCGTTGGCGGAGCACTGGACGCAGCTTCTG
CATCGGCAGGGGGGGCAGGAGCGACGCCGACAATTTCGGGCGAGGAGGGA
GGAGAAGCGCGCCGAAGCAGTACCAGTGGATGTGAACATGAATTACCGAG
CAAGCCACACAGACAAAACTCTTACTCCCCGCCGATCGATTCCGGGTCAA
TGAAGAACTCTGGCGTGGTTGCCTCGCAGATTCAGGTAGAGGTGACTCGA
GTTCAGTGGGATATTTTGCTATGATAATTCATACTTGAAGGTGGCAGGTT
CTTGGACGCCTGGCTTTGCTATGGCAGTCTGGCAGGGACAAAGTAAACGA
TCACGACTTTGTTTAGGAGCGGCCTAGTGTGGGCAGCGCTTTGGTGGTAT
TTGGGAGTCTGCTAGTTAGCCTTTGGGTGAAGTATTTGAATGACCAAAAA
TTGAAGCAAGGGGGTTATGATGCCTGCCAGTCTGTAGGTGATCTCGTTTC
TGTTTTTTTTTCAAATGTTGATGCATATACTATGACATCGTCTGCGCTGT
TCCTCCCATCGATAGACTGCACGGCCGTCATACAACAATCTCGATTTGGC
TGCCTTCCTCTCTTCTGCAGGGTCTAAAGTCGCCGCAGCCAAGGTCTGGA
TCCTAGCCACATTAACCGCAAGAAAAAGGAGACAGGGAGCAGATCTGGTC
AATAATGCCACCTTTCTGCGAAAATTTAGGTCGCTGATAGAACAAAGATG
ACGC
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Coding sequence (CDS) from alignment at H-paniculata_contig509:14659..15612-

>mRNA_H-paniculata_contig509.12375.1 ID=mRNA_H-paniculata_contig509.12375.1|Name=mRNA_H-paniculata_contig509.12375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig509:14659..15612- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACAACAACAGCAAGCCCAACAGCAGTTGCAGCCAGGTTGTTTCGTCAA
ATCATCGCAGGCTTTCTCTCCCTTGTTCTATGACGACGGTGACTTCTTTC
CTGAGGGAGACACTCTACGGGGAGAATCGTTTTCCCCGCCATTATCTCCG
TCAATAGTGACCCATTTCACCGGCGCAGCTGCCCGATTGGAGGTCATCCC
CGAGTCCCTACGCCGTGCGTCCGTTGGCGGAGCACTGGACGCAGCTTCTG
CATCGGCAGGGGGGGCAGGAGCGACGCCGACAATTTCGGGCGAGGAGGGA
GGAGAAGCGCGCCGAAGCAGTACCAGTGGATGTGAACATGAATTACCGAG
CAAGCCACACAGACAAAACTCTTACTCCCCGCCGATCGATTCCGGGTCAA
TGAAGAACTCTGGCGTGGTTGCCTCGCAGATTCAGCAACAACAACAGCAA
GCCCAACAGCAGTTGCAGCCAGGTTGTTTCGTCAAATCATCGCAGGCTTT
CTCTCCCTTGTTCTATGACGACGGTGACTTCTTTCCTGAGGGAGACACTC
TACGGGGAGAATCGTTTTCCCCGCCATTATCTCCGTCAATAGTGACCCAT
TTCACCGGCGCAGCTGCCCGATTGGAGGTCATCCCCGAGTCCCTACGCCG
TGCGTCCGTTGGCGGAGCACTGGACGCAGCTTCTGCATCGGCAGGGGGGG
CAGGAGCGACGCCGACAATTTCGGGCGAGGAGGGAGGAGAAGCGCGCCGA
AGCAGTACCAGTGGATGTGAACATGAATTACCGAGCAAGCCACACAGACA
AAACTCTTACTCCCCGCCGATCGATTCCGGGTCAATGAAGAACTCTGGCG
TGGTTGCCTCGCAGATTCAGGGTCTAAAGTCGCCGCAGCCAAGGTCTGGA
TCCTAGGGTCTAAAGTCGCCGCAGCCAAGGTCTGGATCCTAG
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