mRNA_H-paniculata_contig50885.12373.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50885.12373.1
Unique NamemRNA_H-paniculata_contig50885.12373.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: Q9ZQK0_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9ZQK0_ARATH)

HSP 1 Score: 58.2 bits (139), Expect = 1.700e-6
Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  193 DSDGLEYRKVGGMEIWICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSLGK 468
            +S G  Y  +  ++  I D+GA+ HM  DS L+ N +   G+V +A+G+R+P++GVG L L   FD      K ++A ++P  + +LLS+ K
Sbjct:  298 ESSGKSYHALSSLKPLIIDSGASHHMISDSKLISNIEPALGNVVIANGDRIPVKGVGDLDL---FD------KSSKAFYMPTFTSNLLSVKK 380          
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: A0A8D9D973_BRACM ((field mustard) hypothetical protein (Fragment) n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9D973_BRACM)

HSP 1 Score: 57.8 bits (138), Expect = 1.970e-6
Identity = 46/148 (31.08%), Postives = 77/148 (52.03%), Query Frame = 1
Query:  106 QVADEDAYEFIAAYIASTSTTGKEEVLSVDSDGLEYRKVGGMEIWICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSLGKFA-DFGHEYRCSREGLRI-NLKTGRVL 543
            +V  ED  EF+  Y+ + +TT ++        G   +     +  I D+GA+ HM  D  L+ + ++  G V +A+G+R+PIEGVG L L   FD +      + A ++P  + +LLS+ K   D G +     + +   +LKTGRV+
Sbjct:  272 RVTKEDWDEFVK-YVYALATTRRQ--------GAPAKASTSNKPIIVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 401          
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: UPI000BBEF31C (uncharacterized protein LOC111199942 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEF31C)

HSP 1 Score: 57.4 bits (137), Expect = 2.830e-6
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  226 GMEIWICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSLGKFADFGHEY 492
            G++  I D+GA+ HM  D  L+ N +   GHV +A+G+R+PI GVG L L F  DS+        A ++P  + +LLS+ K +D G EY
Sbjct:  395 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSK--------ALYMPEFASNLLSV-KRSDNGGEY 473          
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: UPI000BBE966B (uncharacterized protein LOC106448712 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE966B)

HSP 1 Score: 57.4 bits (137), Expect = 2.960e-6
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  226 GMEIWICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSLGKFADFGHEY 492
            G++  I D+GA+ HM  D  L+ N +   GHV +A+G+R+PI GVG L L F  DS+        A ++P  + +LLS+ K +D G EY
Sbjct:  410 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSK--------ALYMPEFTSNLLSV-KRSDNGGEY 488          
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: UPI000BBECC90 (uncharacterized protein LOC106373021 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBECC90)

HSP 1 Score: 57.4 bits (137), Expect = 2.990e-6
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  226 GMEIWICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSLGKFADFGHEY 492
            G++  I D+GA+ HM  D  L+ N +   GHV +A+G+R+PI GVG L L F  DS+        A ++P  + +LLS+ K +D G EY
Sbjct:  409 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSK--------ALYMPEFTSNLLSV-KRSDNGGEY 487          
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: UPI000539F602 (uncharacterized protein LOC104779247 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000539F602)

HSP 1 Score: 57.0 bits (136), Expect = 3.450e-6
Identity = 48/161 (29.81%), Postives = 77/161 (47.83%), Query Frame = 1
Query:    4 RCFICRSKDHLRRECPNVYCGRCGQRGHDLYACLQVADED--AYEFIAAYIASTSTTGKEEVLSV------DSDGLEYRKVGGMEIWICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSL 462
            RC+I     HLR   P   CG  G R H +      A+ +  A +     +A+TS   ++  L        D+ G  Y  +   +  I D+GA+ HM  DS L+   +   G+V +A+G ++P++G+G L L   FD      K T+A ++P  +  LLS+
Sbjct:   48 RCWILHP--HLRANRPMNNCG--GPRAHQVTVEPSTAEPNQRASDVNGTALAATSDLVRKSDLDALIKALKDASGNSYLALNQTKPLIVDSGASHHMISDSKLISELKPAVGNVIIANGEKVPVKGIGDLKL---FD------KTTKAFYMPSFTSKLLSV 195          
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: A0A178U605_ARATH (ULP_PROTEASE domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178U605_ARATH)

HSP 1 Score: 56.2 bits (134), Expect = 7.730e-6
Identity = 32/94 (34.04%), Postives = 54/94 (57.45%), Query Frame = 1
Query:  181 VLSVDSDGLEYRKVGGMEIWICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSL 462
            ++S+   G+ +         + D+GA+ HM  +S+LL N +   GHV +A+G+++PIEG+G L L F  DS+        A F+P  + +LLS+
Sbjct:  323 IVSLKESGITFSSQTSSSSIVIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSK--------AFFMPKFTSNLLSV 407          
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: A0A1J3DSB6_NOCCA (Uncharacterized protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DSB6_NOCCA)

HSP 1 Score: 52.4 bits (124), Expect = 1.280e-5
Identity = 29/76 (38.16%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  241 ICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSLGK 468
            I D+GA+ HM  D +L+ + +   GHV +A+G+++PI+G+G L L   FD E      +QA ++P  + +LLS+ K
Sbjct:   33 IVDSGASHHMISDLNLIKDIKPALGHVSIANGDQIPIKGIGNLKL---FDKE------SQAFYMPSFTSNLLSVKK 99          
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: Q9FWZ5_ARATH (Putative retroelement polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9FWZ5_ARATH)

HSP 1 Score: 55.5 bits (132), Expect = 1.390e-5
Identity = 32/94 (34.04%), Postives = 54/94 (57.45%), Query Frame = 1
Query:  181 VLSVDSDGLEYRKVGGMEIWICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSL 462
            ++S+   G+ +         + D+GA+ HM  +S+LL N +   GHV +A+G+++PIEG+G L L F  DS+        A F+P  + +LLS+
Sbjct:  310 IVSLKESGITFSSQTSSGSIVIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSK--------AFFMPKFTSNLLSV 394          
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Match: UPI0006AB2FB3 (uncharacterized protein LOC106407804 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB2FB3)

HSP 1 Score: 55.1 bits (131), Expect = 1.630e-5
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 1
Query:  226 GMEIWICDNGATKHMTHDSDLLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHHLLSLGKFAD 477
            G++  I D+GA+ HM  D  L+ N +   GHV +A+G+R+PI GVG L L F  DS+        A ++P  + +LLS+ +  D
Sbjct:  414 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSK--------ALYMPEFTSNLLSVKRCTD 488          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50885.12373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q9ZQK0_ARATH1.700e-635.87Putative retroelement pol polyprotein n=1 Tax=Arab... [more]
A0A8D9D973_BRACM1.970e-631.08(field mustard) hypothetical protein (Fragment) n=... [more]
UPI000BBEF31C2.830e-640.45uncharacterized protein LOC111199942 n=1 Tax=Brass... [more]
UPI000BBE966B2.960e-640.45uncharacterized protein LOC106448712 n=1 Tax=Brass... [more]
UPI000BBECC902.990e-640.45uncharacterized protein LOC106373021 n=1 Tax=Brass... [more]
UPI000539F6023.450e-629.81uncharacterized protein LOC104779247 n=1 Tax=Camel... [more]
A0A178U605_ARATH7.730e-634.04ULP_PROTEASE domain-containing protein n=1 Tax=Ara... [more]
A0A1J3DSB6_NOCCA1.280e-538.16Uncharacterized protein (Fragment) n=1 Tax=Noccaea... [more]
Q9FWZ5_ARATH1.390e-534.04Putative retroelement polyprotein n=1 Tax=Arabidop... [more]
UPI0006AB2FB31.630e-538.10uncharacterized protein LOC106407804 n=1 Tax=Brass... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50885contigH-paniculata_contig50885:426..1067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.9
Seed ortholog evalue2.4e-08
Seed eggNOG ortholog15368.BRADI3G29820.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size579
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930492.4191039-CDS-H-paniculata_contig50885:425..8771622930492.4191039-CDS-H-paniculata_contig50885:425..877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50885 426..877 -
1691481316.643606-CDS-H-paniculata_contig50885:425..8771691481316.643606-CDS-H-paniculata_contig50885:425..877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50885 426..877 -
1622930492.436371-CDS-H-paniculata_contig50885:940..10671622930492.436371-CDS-H-paniculata_contig50885:940..1067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50885 941..1067 -
1691481316.6589139-CDS-H-paniculata_contig50885:940..10671691481316.6589139-CDS-H-paniculata_contig50885:940..1067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50885 941..1067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50885.12373.1prot_H-paniculata_contig50885.12373.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50885 426..1067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50885.12373.1

>prot_H-paniculata_contig50885.12373.1 ID=prot_H-paniculata_contig50885.12373.1|Name=mRNA_H-paniculata_contig50885.12373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=193bp
PRCFICRSKDHLRRECPNVYCGRCGQRGHDLYACLQVADEDAYEFIAAYI
ASTSTTGKEEVLSVDSDGLEYRKVGGMEIWICDNGATKHMTHDSDLLFNY
QECDGHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQASFIPLLSHH
LLSLGKFADFGHEYRCSREGLRINLKTGRVLSAEQFGRLHVMR
back to top

mRNA from alignment at H-paniculata_contig50885:426..1067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50885.12373.1 ID=mRNA_H-paniculata_contig50885.12373.1|Name=mRNA_H-paniculata_contig50885.12373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=642bp|location=Sequence derived from alignment at H-paniculata_contig50885:426..1067- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAGGTGCTTCATCTGCCGCTCCAAGGATCACCTTCGACGGGAATGCCC CAACGTGTACTGTGGGCGATGTGGTCAGCGTGGTCACGACTTGTACGCGT GCCTCCAGGTCGCCGATGAAGATGCTTGTTTGGCTGAAGCTGAAACTGAG GTTGAACTTGAAGAGGCGCTCAAGGTTGACCTGGGCGAAGACGAGTTCAT CGCGGCATACATCGCGTCGACTTCCACCACAGGCAAGGAAGAGGTGTTAT CTGTGGACTCTGACGGGTTAGAATATCGTAAGGTGGGGGGGATGGAAATT TGGATTTGTGATAATGGTGCAACGAAACACATGACCCATGATTCAGATCT TCTTTTTAATTACCAGGAATGTGATGGGCATGTACGCCTTGCAGATGGTA ATCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTCCTTCAATTTCGATTT GATTCCGAGATTGTTTTGATGAAGTTAACTCAGGCTTCGTTCATACCACT TCTCAGTCATCACCTTCTATCTCTCGGGAAATTCGCGGACTTTGGTCATG AATATAGGTGTTCGCGCGAAGGGCTCAGAATTAACCTTAAAACAGGGAGA GTTCTGAGTGCTGAGCAATTTGGTCGCCTTCACGTGATGCGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig50885:426..1067-

>mRNA_H-paniculata_contig50885.12373.1 ID=mRNA_H-paniculata_contig50885.12373.1|Name=mRNA_H-paniculata_contig50885.12373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at H-paniculata_contig50885:426..1067- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAGGTGCTTCATCTGCCGCTCCAAGGATCACCTTCGACGGGAATGCCC
CAACGTGTACTGTGGGCGATGTGGTCAGCGTGGTCACGACTTGTACGCGT
GCCTCCAGGTCGCCGATGAAGATGCTTCCAAGGTGCTTCATCTGCCGCTC
CAAGGATCACCTTCGACGGGAATGCCCCAACGTGTACTGTGGGCGATGTG
GTCAGCGTGGTCACGACTTGTACGCGTGCCTCCAGGTCGCCGATGAAGAT
GCTTACGAGTTCATCGCGGCATACATCGCGTCGACTTCCACCACAGGCAA
GGAAGAGGTGTTATCTGTGGACTCTGACGGGTTAGAATATCGTAAGGTGG
GGGGGATGGAAATTTGGATTTGTGATAATGGTGCAACGAAACACATGACC
CATGATTCAGATCTTCTTTTTAATTACCAGGAATGTGATGGGCATGTACG
CCTTGCAGATGGTAATCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTCC
TTCAATTTCGATTTGATTCCGAGATTGTTTTGATGAAGTTAACTCAGGCT
TCGTTCATACCACTTCTCAGTCATCACCTTCTATCTCTCGGGAAATTCGC
GGACTTTGGTCATGAATATAGGTGTTCGCGCGAAGGGCTCAGAATTAACC
TTAAAACAGGGAGAGTTCTGAGTGCTGAGCAATTTGGTCGCCTTCACGTG
ATGCGAACGAGTTCATCGCGGCATACATCGCGTCGACTTCCACCACAGGC
AAGGAAGAGGTGTTATCTGTGGACTCTGACGGGTTAGAATATCGTAAGGT
GGGGGGGATGGAAATTTGGATTTGTGATAATGGTGCAACGAAACACATGA
CCCATGATTCAGATCTTCTTTTTAATTACCAGGAATGTGATGGGCATGTA
CGCCTTGCAGATGGTAATCGTCTCCCGATCGAAGGAGTTGGCATGCTGTT
CCTTCAATTTCGATTTGATTCCGAGATTGTTTTGATGAAGTTAACTCAGG
CTTCGTTCATACCACTTCTCAGTCATCACCTTCTATCTCTCGGGAAATTC
GCGGACTTTGGTCATGAATATAGGTGTTCGCGCGAAGGGCTCAGAATTAA
CCTTAAAACAGGGAGAGTTCTGAGTGCTGAGCAATTTGGTCGCCTTCACG
TGATGCGA
back to top