prot_H-paniculata_contig5087.12372.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5087.12372.1
Unique Nameprot_H-paniculata_contig5087.12372.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length775
Homology
BLAST of mRNA_H-paniculata_contig5087.12372.1 vs. uniprot
Match: D8LHI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI7_ECTSI)

HSP 1 Score: 436 bits (1120), Expect = 5.730e-132
Identity = 370/817 (45.29%), Postives = 434/817 (53.12%), Query Frame = 0
Query:    9 PPHSRKPRF-EFFKRLCLDDGYPSGTLAALSTMEAFLTPLAGDQEREEESIQGLSWLDYQGFPTEVRPLCTPEENALLPDAAANDLEGHLDEANQTDGEN---KTAAELATLCYEDPYWGMIEMGLLPKLRNLIRAYQYYYSSSSKFLPTNTGTKGGAG----WRGLAGDIGSST---LNPRAALSCLRVLLAIARRAPSAAERVAFEPGLMDAVREAFLEPGVDGSLPVYLGNER--SESATTVPH--AALGGNTMAAMERTSSVAMITG--------------RLAMLAVRLTRVLVQSGREVALRVSRGRLLGSTKGCDVMLVHNNSTPQALLGVQREVLELWRSCLSYGIDLIGAESIALVSREQGWWPG---GACTIHIPLTSASASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEDGAEAIEIVKWS---GA----------EPSVVLYRALHQLACACVLPPLSAESGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTITVVGGIEVSAEIWAGLGDTVDSAVEAALFWLLGGCCSGGRGGRSGGIDSVIEAAAIHLVACWVERHAVMSRTPERRGPRQLASIVEDATVLLSAVLASPVL-VPAAVRSARTATRGIPVQTGGVDERGTPFGVFFGRVGKITTAAAVEATAGLDWLSAVFRLGLACDKAAPGEGQAALLSGPATTTAALVNFLTAPPPL-------------PTAAGRMAAATADVGQGYVDQGLGQEFGGVRRRTICRAAACSRWLACRFLALWGSGSGSSSLSSWAVMRRDCALQV 766
            PPH R P       RLCLDDG PS T AAL+  EA L PLA D E EE ++QGLSW+DYQ FP E RPLCTPEE   LP    + +E   DE     GE    KT  ELA LCYEDP  G++EM LLPK+ ++I++Y    ++      ++ G  GG G    + G A    ++T     PRAALSCLRVL A+A RAP AAERVA EPGL+DAVREAFLEP  DG+LP+ L      + +AT +P   +       A   R    A   G              +LA+LAVRL RVLVQSGR VAL +S+  LLGSTKG   +   +     AL  VQREVLELWR CLSYG+D+  A+++ LV+R QGWWPG   G               XXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXX   GA++   V  S   GA           P +  YRALHQLACACVLPP    + G                                +V GG+ V  E WA +GDTVD+AVE AL WLL G   GGR G     ++  +AAA+HLVACWVER+  MSRT  RRG R L S  EDA VL S++LASP L +PAAV +    TR                G  F + G  +  AA  A AGLDWLS VFRLGLAC++A PGE  AAL S P  T                           PTAA     AT                     R + RA A +RWL CR LAL   G G      WA +RRDCALQ 
Sbjct:  469 PPHRRLPEMLPVAIRLCLDDGNPSVTSAALNATEALLAPLARDGEDEERAMQGLSWVDYQAFPCEPRPLCTPEEKQHLPPLKDSAIEEEGDETPGDGGEGEGGKTVRELARLCYEDPCRGLLEMALLPKIASVIKSYADQVAADGAQAASDGG--GGLGDKGSFHGAARATAAATAVSFRPRAALSCLRVLCAVAGRAPWAAERVASEPGLLDAVREAFLEPRADGTLPLDLSETAPATVTATAIPKQLSPPPPQEPATSARAEGKARTEGPRDANGCPPXXXQEQLALLAVRLARVLVQSGRGVALALSQTPLLGSTKGWLALGQGSRRPLPALEAVQREVLELWRCCLSYGVDVAAADTVVLVARGQGWWPGLSGGVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGEEPTAXXXXXXXXXXXXXXXXXXXXXXXVGAQSSSGVAQSTSGGAGGGSRGGDSLPPRLAFYRALHQLACACVLPP-GVSAAGRNKNDGAETAGGDGKAGAGAAGTGVRKEAEGFSV-GGVAVVPESWADVGDTVDAAVEGALLWLLSGVRGGGRVGGXXAAETAQQAAAVHLVACWVERYQAMSRTIGRRGSRHLESTAEDAAVLFSSLLASPALPLPAAVAATTAVTRRGDQXXXXXXXXXXXSGDGFSQRGVSSGEAA--AAAGLDWLSGVFRLGLACERAVPGEAAAALASAPEATAXXXXXXXXXXXXXXXXXXXXXXXXXXPTAAVAPPPATF-------------------LRRVRRAEAGARWLGCRLLALGCRGGGREGGWPWAALRRDCALQA 1260          
BLAST of mRNA_H-paniculata_contig5087.12372.1 vs. uniprot
Match: A0A6H5JML9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML9_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 3.660e-93
Identity = 275/678 (40.56%), Postives = 328/678 (48.38%), Query Frame = 0
Query:  128 MGLLPKLRNLIRAYQYYYSSSSKFLPTNTGTKGGAGWRGLAGDIGSS-------------TLNPRAALSCLRVLLAIARRAPSAAERVAFEPGLMDAVREAFLEPGVDGSLPVYLGNERSESATTVPHAALGGNTMAAMERTSSVAMITGR---------------LAMLAVRLTRVLVQSGREVALRVSRGRLLGSTKGCDVMLVHNNSTPQALLGVQREVLELWRSCLSYGIDLIGAESIALVSREQGWWPG----------GACTIHIPLTSASASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEDGAEAIEIVKWSGAEPSVVLYRALHQLACACVLPPLSAESGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTITVVGGIEVSAEIWAGLGDTVDSAVEAALFWLLGGCCSGGRGGRSGGIDSVIEAAAIHLVACWVERHAVMSRTPERRGPRQLASIVEDATVLLSAVLASPVLVPAAVRSARTATRGIPVQTGGVDERGTPFGVFFGRVGKITTAAAVEA-TAGLDWLSAVFRLGLACDKAAPGEGQAALLSGPATTTAALVNFLTAPPPLPTAAGRMAAATADVGQGYVDQGLGQEFGGVRRRTICRAAACSRWLACRFLALWGSGSGSSSLSSWAVMRRDCALQV 766
            M LLPK+ ++I++     S+         G+ GG G     GD+GS              +L PRAALSCLRVL A+A RAP AAERVA EPGL+DAVREAFLEP  DG+LP+ L +E + + TT   +       A   R    A   G                LA+LAVRL RVLVQSGR VAL +S+  LLGSTKG   +   +     AL  VQREVLELWR CLSYGID+  A+++ LV+R QGWWPG                 PL + + +       XXXXXXXXXXXXXXX                             G+   + V      P +  YRALHQLACACVLPP    + G                                +V GG+ V  E WA +GDTVD+AVEA L WLL     GG     G  ++  +AAA+HLVACW+ER+  MSRT  RR    L SI EDA VL S++LAS  L P     A   TRG     GG                     ++ EA TAGLDWL  VFRLGLAC++A PGE  AAL S P  T AAL  FL         AG  A A    G                 R + RA A +RWL CR LAL   G G      WA +RRDCALQ 
Sbjct:  144 MALLPKIASVIKSCAGQVSADG----AQAGSDGGGG----LGDMGSVHGAARATAEAAAVSLRPRAALSCLRVLCAVAGRAPWAAERVASEPGLLDAVREAFLEPRTDGTLPLDL-SEAAPATTTKQLSPAPPQEPATPARAEGKARGGGPGDANGCPXXXXXQEGLALLAVRLARVLVQSGRGVALALSQTPLLGSTKGWLALGQGSRRPLPALEAVQREVLELWRCCLSYGIDVAAADTVVLVARGQGWWPGLSVGGVGXXXXXXXXXAPLVADTVTVERGDGGXXXXXXXXXXXXXXXTAATPVAAKSLPVGVGVGGARSTSGGASGGSRGGDSVP-----PRLAFYRALHQLACACVLPP-GGNAAGRNKNDGAETAGGDGKAGVGAAGAGLRKEAEGFSV-GGVVVVPESWADVGDTVDAAVEAVLLWLLRSVRGGGGVDGGGTAETAQQAAAVHLVACWMERYQAMSRTAGRRASGHLESIAEDAAVLFSSLLASSAL-PLMAAVAAAVTRGCDQSGGGXXXXXXXXXXXXXXSFSQRGVSSGEAVTAGLDWLCGVFRLGLACERAMPGEAAAALASAPEATAAALXXFLAT-------AGPTAGAVXXGGALTTPTAAVAPPPATFLRRVRRAEAGARWLGCRLLALVSRGVGRGGGWPWAALRRDCALQA 797          
BLAST of mRNA_H-paniculata_contig5087.12372.1 vs. uniprot
Match: A0A835YNX8_9STRA (RPAP1_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNX8_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.500e-17
Identity = 104/338 (30.77%), Postives = 148/338 (43.79%), Query Frame = 0
Query:    9 PPHSRKPRF-EFFKRLCLDDGYPSGTLAALSTMEAFLTPLAGDQEREEESIQGLSWLDYQGFPTEVRPLCTPEENALLPDAAANDLEGHLDEANQTDGENKTAAELATLCYEDPYWGMIEMGLLPKLRNLIRAYQYYYSSSSKFLPTNTGTKGGAGWRGLAGDIGSSTLNPRAALSCLRVLLAIARRAPSAAERVAFEPGLMDAVREAFLEPGVDGSLPVYLGNERSESATTVPHAALGGNTMAAMERTSSVAMITGRLAMLAVRLTRVLVQSGREVALRVSRGRLLGSTKGCDVMLVHNNSTPQ----ALLGVQREVLELWRSCLSYGIDLIGAESI 341
            PPH+R P       RLCLD        AAL  ++A+L  LA +      +                RP CT EE   + DA    L+G  +E  +  GE  +  + A   Y +P  G++ M LLP+LR + R +     +S+ ++         A     A D  S+   P  A+ CLRVL+A+AR + + AER+  EPGL+DAVREAF+EP   G+ PV L    S           GG+T +  +   S A+        A+RL R +    R  A  V  G   G       +L             L   Q E L +W +CL YG+ L  AE++
Sbjct:  243 PPHARLPEMLPAALRLCLDGESWKEVAAALGALDAYL--LAPEDAAAWAAAPWCGXXXXXXXXXXRRPQCTVEEQRGM-DA----LDGGEEEGEEQ-GE-LSLQQAARAAYLEPVRGLLAMNLLPRLRAITREWADASDASAPWVI--------AAAADAAADCRSA---PPGAVECLRVLVAVARSSAANAERIIAEPGLLDAVREAFVEPDTAGAPPVPLSCGSSGGG--------GGSTGSGNDVERSPAVW-------ALRLARAVCHGSRLAARHVLYGGRGGILDAAQALLALGGXXXXXXXXVLAAAQCEALAVWHACLRYGLALEAAETV 545          
BLAST of mRNA_H-paniculata_contig5087.12372.1 vs. uniprot
Match: A0A6H5JHK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK5_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.760e-8
Identity = 36/60 (60.00%), Postives = 39/60 (65.00%), Query Frame = 0
Query:    9 PPHSRKPRF-EFFKRLCLDDGYPSGTLAALSTMEAFLTPLAGDQEREEESIQGLSWLDYQ 67
            PPH R P       RLCLDDG PS T AAL   EA L PLA D E EE ++QGLSW+DYQ
Sbjct:  579 PPHRRLPEMLPVAIRLCLDDGNPSVTSAALIATEALLAPLARDGEDEESAMQGLSWVDYQ 638          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5087.12372.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LHI7_ECTSI5.730e-13245.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JML9_9PHAE3.660e-9340.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNX8_9STRA2.500e-1730.77RPAP1_C domain-containing protein n=1 Tax=Tribonem... [more]
A0A6H5JHK5_9PHAE5.760e-860.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039913RNA polymerase II-associated protein RPAP1/Rba50PANTHERPTHR21483FAMILY NOT NAMEDcoord: 13..334

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5087contigH-paniculata_contig5087:1316..14205 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5087.12372.1mRNA_H-paniculata_contig5087.12372.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5087 1316..14205 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5087.12372.1 ID=prot_H-paniculata_contig5087.12372.1|Name=mRNA_H-paniculata_contig5087.12372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=775bp
MGTPPSLIPPHSRKPRFEFFKRLCLDDGYPSGTLAALSTMEAFLTPLAGD
QEREEESIQGLSWLDYQGFPTEVRPLCTPEENALLPDAAANDLEGHLDEA
NQTDGENKTAAELATLCYEDPYWGMIEMGLLPKLRNLIRAYQYYYSSSSK
FLPTNTGTKGGAGWRGLAGDIGSSTLNPRAALSCLRVLLAIARRAPSAAE
RVAFEPGLMDAVREAFLEPGVDGSLPVYLGNERSESATTVPHAALGGNTM
AAMERTSSVAMITGRLAMLAVRLTRVLVQSGREVALRVSRGRLLGSTKGC
DVMLVHNNSTPQALLGVQREVLELWRSCLSYGIDLIGAESIALVSREQGW
WPGGACTIHIPLTSASASTASAEKNTSDDSGATSGAAPQPTAATATAAAA
ATAAAAASVSNEEQEETEDGAEAIEIVKWSGAEPSVVLYRALHQLACACV
LPPLSAESGGGGGSGVGRAKDGAAAASEVSVGKSGSGSGSTITVVGGIEV
SAEIWAGLGDTVDSAVEAALFWLLGGCCSGGRGGRSGGIDSVIEAAAIHL
VACWVERHAVMSRTPERRGPRQLASIVEDATVLLSAVLASPVLVPAAVRS
ARTATRGIPVQTGGVDERGTPFGVFFGRVGKITTAAAVEATAGLDWLSAV
FRLGLACDKAAPGEGQAALLSGPATTTAALVNFLTAPPPLPTAAGRMAAA
TADVGQGYVDQGLGQEFGGVRRRTICRAAACSRWLACRFLALWGSGSGSS
SLSSWAVMRRDCALQVGGGDGCCE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039913RPAP1/Rba50