prot_H-paniculata_contig50835.12369.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig50835.12369.1
Unique Nameprot_H-paniculata_contig50835.12369.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length74
Homology
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A6H5JC05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC05_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.330e-12
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0
Query:    3 RLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVAVITIYVDDPLIS 63
            ++++A+YGL Q+GR W  +    L    +EQ  VDPC+FRK+VD EVV +I IYVDD L++
Sbjct:   76 KVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA 136          
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A6H5L296_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L296_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.050e-12
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 0
Query:    3 RLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVAVITIYVDDPLIS 63
            ++++A+YGL Q+GR W  +    L    FEQ  VDPC+FRK+VD EVV +I IYVDD L++
Sbjct:    7 KVERALYGLTQSGREWGFEAADALIENGFEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA 67          
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A6H5JFZ2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFZ2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 4.530e-12
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 0
Query:    3 RLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVAVITIYVDDPLISTKG 66
            ++++A+YGL Q+GR W  +    L    +EQ  VDPC+FRK+VD EVV +I IYVDD L++  G
Sbjct:  378 KVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADG 441          
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.510e-11
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 0
Query:    3 RLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVAVITIYVDDPLIS 63
            ++++A+YGL Q+GR W  +    L +  +EQ  VDPC+FRK+VD EVV +I IYVDD ++S
Sbjct:   47 KVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLS 107          
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.590e-11
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 0
Query:    3 RLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVAVITIYVDDPLIS 63
            ++++A+YGL Q+GR W  +    L +  +EQ  VDPC+FRK+VD EVV +I IYVDD ++S
Sbjct:  260 KVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLS 320          
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A6H5JHI8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI8_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.590e-11
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 0
Query:    3 RLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVAVITIYVDDPLIS 63
            ++++A+YGL Q+GR W  +    L +  +EQ  VDPC+FRK+VD EVV +I IYVDD ++S
Sbjct:  516 KVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLS 576          
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A6H5L6D6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.600e-11
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 0
Query:    3 RLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVAVITIYVDDPLIS 63
            ++++A+YGL Q+GR W  +    L +  +EQ  VDPC+FRK+VD EVV +I IYVDD ++S
Sbjct:  440 KVERALYGLEQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLS 500          
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A6H5K9E2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E2_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.610e-11
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 0
Query:    3 RLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVAVITIYVDDPLIS 63
            ++++A+YGL Q+GR W  +    L +  +EQ  VDPC+FRK+VD EVV +I IYVDD ++S
Sbjct:  693 KVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLS 753          
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A6H5JRY9_9PHAE (CCHC-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY9_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.620e-11
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 0
Query:    3 RLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVAVITIYVDDPLIS 63
            ++++A+YGL Q+GR W  +    L +  +EQ  VDPC+FRK+VD EVV +I IYVDD ++S
Sbjct: 1155 KVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLS 1215          
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.230e-11
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 0
Query:    3 RLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVAVITIYVDDPLIS 63
            ++++A+YG  Q+GR W  +V   L +  +EQ  VDPC+FRK+VD EVV +I IYVDD ++S
Sbjct: 1128 KVERALYGHKQSGREWGFEVADALTSNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLS 1188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JC05_9PHAE3.330e-1249.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L296_9PHAE4.050e-1250.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFZ2_9PHAE4.530e-1248.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCN6_9PHAE1.510e-1149.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR39_9PHAE1.590e-1149.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHI8_9PHAE1.590e-1149.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6D6_9PHAE1.600e-1149.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9E2_9PHAE1.610e-1149.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRY9_9PHAE1.620e-1149.18CCHC-type domain-containing protein n=4 Tax=Ectoca... [more]
A0A6H5KHN5_9PHAE2.230e-1149.18CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..73
e-value: 3.2E-11
score: 43.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50835contigH-paniculata_contig50835:87..308 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50835.12369.1mRNA_H-paniculata_contig50835.12369.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig50835 87..731 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig50835.12369.1 ID=prot_H-paniculata_contig50835.12369.1|Name=mRNA_H-paniculata_contig50835.12369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MGRLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVV
AVITIYVDDPLISTKGPKIMDEFW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2