mRNA_H-paniculata_contig50835.12369.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY) HSP 1 Score: 138 bits (347), Expect = 6.280e-34 Identity = 78/216 (36.11%), Postives = 122/216 (56.48%), Query Frame = 1
Query: 4 EPKNHREAQASPEWKHWQRT-EVEIQCLTHNGVWTQVERPKNKLVVSTMMLYQRIIAEDGKVEKYKCRLFAHVNRQINGTHFQEASSPSPAAASTKMILSLATI*YWELRHADFEQAYLQAPIDQEIFVEIPIEYREFPGAMGRLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLF---RKIVDVEVVAVITIYVDDPLISTKGPKIMDE 639
EP++ EAQASPEW W++ + E L G W + PK++ V ++QR ++G+V KYK RL A QI G F E +P S + IL+LA + WE+ D + AYL + +EI++ P + + G + RL K +YGL Q+GR W+ K+ +L +++ DPC++ RK +V++ IT++VDD L+ T PK+M+E
Sbjct: 906 EPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQI---ITVWVDDLLLFTNSPKLMEE 1118
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A401H727_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H727_9APHY) HSP 1 Score: 127 bits (320), Expect = 2.470e-30 Identity = 73/209 (34.93%), Postives = 114/209 (54.55%), Query Frame = 1
Query: 25 AQASPEWKHWQRT-EVEIQCLTHNGVWTQVERPKNKLVVSTMMLYQRIIAEDGKVEKYKCRLFAHVNRQINGTHFQEASSPSPAAASTKMILSLATI*YWELRHADFEQAYLQAPIDQEIFVEIPIEYREFPGAMGRLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLF---RKIVDVEVVAVITIYVDDPLISTKGPKIMDE 639
AQASPEW W++ + E L G W + PK + V ++QR ++ +V KYK RL A QI G F E +P S + IL+LA + WE+ D + AYL + +EI++ P + + G + RL K +YGL Q+G W+ K+ +L +++ DPC++ RK +V++ IT++VDD L+ T PK+M+E
Sbjct: 718 AQASPEWSEWEKAVKAEYDQLQGMGTWELQDLPKYRNAVGCKWVFQRKTNKESQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGCKWNRKLHRELMELGYKRLEADPCVYLWERKEGEVQI---ITVWVDDLLLFTNSPKLMEE 923
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A507FH27_9FUNG (DNA-directed DNA polymerase n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FH27_9FUNG) HSP 1 Score: 126 bits (316), Expect = 8.950e-30 Identity = 72/199 (36.18%), Postives = 113/199 (56.78%), Query Frame = 1
Query: 7 PKNHREAQASPEWKHWQRTE-VEIQCLTHNGVWTQVERPKNKLVVSTMMLYQRIIAEDGKVEKYKCRLFAHVNRQINGTHFQEASSPSPAAASTKMILSLATI*YWELRHADFEQAYLQAPIDQEIFVEIPIEYREFPGAMGRLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVAVITIYVDD 600
P N ++A A P +HW E E+Q L N +T V R + ++ +Y+ + +DG +E+++ RL A Q +G + E SP A+ + +L+LA + W+ R ADF A+L +D I++ P Y P + L+KAIYGL QAGR W ++T L+AK ++QS DPC+F + D + V +++IYVDD
Sbjct: 1034 PSNRKQAMAGPNKQHWLDAESYELQQLETNNTYTLVNRTASIKCITCRWVYKCKLNQDGSIERFRARLVARGFLQRHGYDYMETYSPVMRIATFRWLLALAALNNWQTRSADFSSAFLYGVLDTPIYMLPPDGYNADPTKIWLLNKAIYGLKQAGRVWFYRLTSYLKAKGYQQSRADPCVFFQHSDSDSV-ILSIYVDD 1231
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A8J5Z630_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Z630_9ROSI) HSP 1 Score: 123 bits (308), Expect = 8.960e-29 Identity = 73/216 (33.80%), Postives = 112/216 (51.85%), Query Frame = 1
Query: 1 VEPKNHREAQASPEWKHWQRTEVEIQCLTHNGVWTQVERPKNKLVVSTMMLYQRIIAEDGKVEKYKCRLFAHVNRQINGTHFQEASSPSPAAASTKMILSLATI*YWELRHADFEQAYLQAPIDQEIFVEIP--IEYREFPGAMGRLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVAVITIYVDDPLISTKGPKIMDEF 642
VEP N++EA WK E E+ + N W V+RP+ K V+ +++ DG + K+K RL Q G F+E +P + K++LSLA W + H D + A+L + +EI+VE P + + + RL KA+YGL QA R+W ++ L FE+S +P LF K E + +++IYVDD L++ I+DEF
Sbjct: 144 VEPSNYKEAAKDMYWKR--AMEAELDMIQKNQTWDLVKRPEKKKVIGVRWVFRAKFNADGSLNKHKARLVVKGYSQQYGIDFEETFAPVARLDTIKLLLSLAAQKQWRIHHLDVKSAFLNGYLKEEIYVEQPDGFQIQGHEDKVYRLKKAMYGLKQAPRAWYDRIDTYLSRLGFEKSLSEPTLFVKKSKEETLLIVSIYVDDLLVTGSKDVIIDEF 357
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A6H5KY81_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY81_9PHAE) HSP 1 Score: 120 bits (302), Expect = 1.210e-28 Identity = 66/182 (36.26%), Postives = 106/182 (58.24%), Query Frame = 1
Query: 70 EIQCLTHNGVWTQV-ERPKNKLVVSTMMLYQRIIAEDGKVEKYKCRLFAHVNRQINGTHFQEASSPSPAAASTKMILSLATI*YWELRHADFEQAYLQAPIDQEIFVEIPIEYREFPGAMGRLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVAVITIYVDDPLIS 612
EI G +T+V E P+ + + + ++ E G + +K R+ A QI G F +SS P AAS K ++++AT +L H D +QAY+ A +++EI++ P + G + ++++A+YGL Q+GR W ++ L +EQ VDPC+FRK+VD EVV +I IYVDD L++
Sbjct: 124 EIDGRDKTGTFTKVMELPEGRKAIGSEWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPPAASIKTMIAVATEKGKKLDHWDVKQAYIHATLNEEIYLRFPEGHGSMSGKVVKVERALYGLKQSGREWGVEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA 305
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY) HSP 1 Score: 116 bits (290), Expect = 1.530e-28 Identity = 63/182 (34.62%), Postives = 100/182 (54.95%), Query Frame = 1
Query: 94 GVWTQVERPKNKLVVSTMMLYQRIIAEDGKVEKYKCRLFAHVNRQINGTHFQEASSPSPAAASTKMILSLATI*YWELRHADFEQAYLQAPIDQEIFVEIPIEYREFPGAMGRLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVAVITIYVDDPLISTKGPKIMDE 639
G W + PK++ V ++Q+ ++G+V KYK RL A QI G F E +P S + IL+LA + WE+ D + AYL + +EI++ P + + G + RL K +YGL Q+G W+ K+ L ++Q DPC++ + EV +IT++VDD L+ T PK+M+E
Sbjct: 2 GTWELQDLPKDRNAVGCKWVFQKKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVHLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGHVCRLHKTLYGLKQSGHKWNRKLHRKLTELGYKQLEADPCVYLQEQKGEV-QIITVWVDDLLLFTNSPKLMEE 182
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE) HSP 1 Score: 120 bits (300), Expect = 1.020e-27 Identity = 66/182 (36.26%), Postives = 104/182 (57.14%), Query Frame = 1
Query: 70 EIQCLTHNGVWTQV-ERPKNKLVVSTMMLYQRIIAEDGKVEKYKCRLFAHVNRQINGTHFQEASSPSPAAASTKMILSLATI*YWELRHADFEQAYLQAPIDQEIFVEIPIEYREFPGAMGRLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVAVITIYVDDPLIS 612
EI G +T+V E P+ + + + ++ E G + +K R+ A QI G F +SS P+AAS K ++++AT +L H D +QAY+ A + +EI++ P G + ++++A+YGL Q+GR W + L +EQ VDPC+FRK+VD EVV +I IYVDD L++
Sbjct: 480 EIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA 661
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE) HSP 1 Score: 119 bits (299), Expect = 1.570e-27 Identity = 66/182 (36.26%), Postives = 103/182 (56.59%), Query Frame = 1
Query: 70 EIQCLTHNGVWTQV-ERPKNKLVVSTMMLYQRIIAEDGKVEKYKCRLFAHVNRQINGTHFQEASSPSPAAASTKMILSLATI*YWELRHADFEQAYLQAPIDQEIFVEIPIEYREFPGAMGRLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVAVITIYVDDPLIS 612
EI G +T+V E P+ + + + ++ E G + +K R+ A QI G F +SS P+AAS K ++++AT +L H D +QAY+ A + +EI++ P G + ++++A+YGL Q GR W + L +EQ VDPC+FRK+VD EVV +I IYVDD L++
Sbjct: 522 EIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA 703
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE) HSP 1 Score: 119 bits (298), Expect = 1.870e-27 Identity = 65/182 (35.71%), Postives = 104/182 (57.14%), Query Frame = 1
Query: 70 EIQCLTHNGVWTQV-ERPKNKLVVSTMMLYQRIIAEDGKVEKYKCRLFAHVNRQINGTHFQEASSPSPAAASTKMILSLATI*YWELRHADFEQAYLQAPIDQEIFVEIPIEYREFPGAMGRLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVAVITIYVDDPLIS 612
EI G +T+V E P+ + + + ++ E G + +K R+ A QI G F +SS P+AAS K ++++AT +L H D +QAY+ A + +EI++ P G + ++++A+YGL Q+GR W + L +EQ VDPC+FRK+VD EVV +I IYVDD +++
Sbjct: 235 EIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVA 416
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE) HSP 1 Score: 119 bits (297), Expect = 2.900e-27 Identity = 65/182 (35.71%), Postives = 104/182 (57.14%), Query Frame = 1
Query: 70 EIQCLTHNGVWTQV-ERPKNKLVVSTMMLYQRIIAEDGKVEKYKCRLFAHVNRQINGTHFQEASSPSPAAASTKMILSLATI*YWELRHADFEQAYLQAPIDQEIFVEIPIEYREFPGAMGRLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVAVITIYVDDPLIS 612
EI G +T+V E P+ + + + ++ E G + +K R+ A QI G F +SS P+AAS K ++++AT +L H D +QAY+ A + +EI++ P G + ++++A+YGL Q+GR W + L +EQ VDPC+FRK+VD EVV +I +YVDD L++
Sbjct: 381 EIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILVA 562 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50835.12369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig50835.12369.1 >prot_H-paniculata_contig50835.12369.1 ID=prot_H-paniculata_contig50835.12369.1|Name=mRNA_H-paniculata_contig50835.12369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp MGRLDKAIYGLVQAGRSWSMKVTVDLRAKWFEQSHVDPCLFRKIVDVEVVback to top mRNA from alignment at H-paniculata_contig50835:87..731- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig50835.12369.1 ID=mRNA_H-paniculata_contig50835.12369.1|Name=mRNA_H-paniculata_contig50835.12369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=645bp|location=Sequence derived from alignment at H-paniculata_contig50835:87..731- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig50835:87..731- >mRNA_H-paniculata_contig50835.12369.1 ID=mRNA_H-paniculata_contig50835.12369.1|Name=mRNA_H-paniculata_contig50835.12369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig50835:87..731- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |