mRNA_H-paniculata_contig5083.12368.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5083.12368.1
Unique NamemRNA_H-paniculata_contig5083.12368.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5083.12368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5083contigH-paniculata_contig5083:7387..12290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size311
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5083.12368.1prot_H-paniculata_contig5083.12368.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5083 7426..12290 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930491.6645644-UTR-H-paniculata_contig5083:7386..74251622930491.6645644-UTR-H-paniculata_contig5083:7386..7425Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5083 7387..7425 +
1691481316.2600262-UTR-H-paniculata_contig5083:7386..74251691481316.2600262-UTR-H-paniculata_contig5083:7386..7425Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5083 7387..7425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930491.684213-CDS-H-paniculata_contig5083:7425..75041622930491.684213-CDS-H-paniculata_contig5083:7425..7504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5083 7426..7504 +
1691481316.271767-CDS-H-paniculata_contig5083:7425..75041691481316.271767-CDS-H-paniculata_contig5083:7425..7504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5083 7426..7504 +
1622930491.7027497-CDS-H-paniculata_contig5083:12099..122901622930491.7027497-CDS-H-paniculata_contig5083:12099..12290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5083 12100..12290 +
1691481316.2804892-CDS-H-paniculata_contig5083:12099..122901691481316.2804892-CDS-H-paniculata_contig5083:12099..12290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5083 12100..12290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5083.12368.1

>prot_H-paniculata_contig5083.12368.1 ID=prot_H-paniculata_contig5083.12368.1|Name=mRNA_H-paniculata_contig5083.12368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
MAVGRQRGSSFMNRVTCLALGLQLCLVLCEGSAFAPKAGGALNTPAKSHN
NSSKGRKRSGGGLRSIFTGRSGAVNTLRATNDGGRRDNGV
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mRNA from alignment at H-paniculata_contig5083:7387..12290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5083.12368.1 ID=mRNA_H-paniculata_contig5083.12368.1|Name=mRNA_H-paniculata_contig5083.12368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4904bp|location=Sequence derived from alignment at H-paniculata_contig5083:7387..12290+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGGTGCCACTGTGTGAACACCGTCCGATTGCTCGTCAATGGCGGTGGG
AAGACAGCGAGGGTCGTCGTTCATGAACAGGGTGACATGCCTCGCGCTGG
GGCTACAGCTGTGTTTAGGTGCGTCTGCAATTCTAGAATTGTGGCGGAAT
GGCCCGCATTGACAGAAAAAAGCAACATATAAACCACTTCTTGTTATTTC
TATTGATTTGAACGTATGTACTTGTGTGTGCATCATGATGACCAGCAGGA
TCATTTACACAGACACCCATGGCAACATGTTCGGGCTGCTGTACACGTGG
CCTATAAAGGTCCTCTAGTGCGCTCCAGGCTTACGCATGTGATAGGGTAT
TGGTTCCCGTATCTATTTCTTCTGCCGCCGTTGCGCACTTGTCTCAGAGA
GTGAGTTGTCACGATGACAGGATAGACAGGTGTCGGCAGAGTACTGTCTC
TAAGTGATCTCTTCCTTGATGCAAAGGTTTGAAGATTGATGTCCGCGTAC
GCACATACTCTAATGCAAAGGTCCAAAGGTTGACGCCTGCCCCGGTGCGC
TTTGATGGACGGGTTGTGGCGTCTCGGAGAGAGTACTGTGCTGTGCTTTC
CTGCACTATTTTGCGCGTGTACCACGAGAATTTCGTTTTCATATTAGAAT
CAGTATATCCTGCTAGCTGTGTTTTCAAACCGCACGTTGAGACGTTCGAT
TTCAAGCTGAAAGAACGGTGAATACAAAATAAGAAATACGTCAAATGATC
TCTTGAGAGAAAACACTCTCTCAAGTCTGGGGTGCTGGCCCTGTGGTCAT
CAACTGCTGTGAACCGCGGTGCGACATACGATACACAACAAGAAATGAAA
ATAACTTCATTCGGTTAACGTCTGATGAACAGGATTATCAGAAGCGCCAC
TTAACCTTCAAATACATACGTTGTACTGTATAATCCAGAATAACACTCCA
GGTGACAACGTTTTTATTGCCCCAAACTGACTGTTATCACCGAAGAGTAT
ATGTAATACGGGTATTTCTGGTGCTATGCATAACGTGTTCCAAGTATGGT
CCTGCCATGTCTCATGCATTGTCCTGCCATGTCCCAGGAGCAAAAAACGA
ACAAGGAACAACCCCCCTACACGTGCGTCCCCCCATCTGAACAGCACGCA
TACATACATACATACATACATACACCCGTTTGTTTAAGGTTCCATCACCC
TGGGGGTCATAATGCGGCGTAAGGGGGAGCAATAAAAATGTATCGATGAA
AGAGATAGCATGGCATGTGGTGTGGGGCGTGTTGTTCGTCTGTGCCACAC
ACCGCTATCAGCAGGCAGCGATAACATCGTTCGTAAACAGCTTGTTTGTC
CCCCAAGAGTGTCATGTTTCCGTGCACCGTCCCTGGGATGACAATACGAT
AGTAGCGTCATCCCAGGAGGTTGAGCCATTATACTTTGCTTTAGCAGCCG
CCCTCAGCGTGCAGTATGCACTTGATTTTTGTTTTTTGTTAATGTCCATC
ACGGTCGACCGTAGCTCTCGCTTGTGACACCATGCCCAAAATCCCGAGTA
ATCCCCCCCGCCCCCCCCCCAAAAAAACGGGGGGTGGGTGGAGCAACGAA
ATCGCCCAGTATCCCCGAGTTCAGATATGGATGCCCGCTTGCGCCCTGCA
GTGTTTACATCACTCAAATATGATACATTCCGCAGTGGTGACCGCGAGTC
TGAGAACTGTACATGAAGCCATCTGAAGTATTCGTATTCGTCCGAGAGAT
GAAATTGATCAACTCTAAGAATCGGAGGTAGCGTGCAATCGGAGTCTTGG
GGGAAATCCGTGGTCCTCGTTCACAGCGCGCGACTCGGAAAAGCGAAACT
ATACGATGTAAGTAACCGACCAGCAGTGTGTGCATCTAATCGCGTCCACA
ATGACTTGGAAATTGACTTGACTACTGCGTTCGTTCGTTCGTTCGAAAAA
AAAGCCGACCAACTAAAACACCAACCGAACAGATCACTCCAATCAAATCA
AATCAAATCAAATCAAACCAATTCATACGATACCATATAAACTATTCCGT
CAATCTTTGGATAAACTAACAATAAAGCATTTGTTTAGCTTACACACCCA
AGATTTATTCATCACCGGGGGAGTTGGGGTATCGTGCGGTTAATCGTAGA
ATAATGAATTCATTTTTCGTATCCCCAGTGAAAACGTCAAAATTGCCGAA
ATATGTTCTCGCCACGAGTGTCATTCTTTGGAGGGGCTGGTATAGTACTC
CCCAACAGAGGAGCGTAGACTGCTGTACACTGGTGGAGACCAAGGCCACA
AACGGATTCTTGCGGAATCAACCGGGTGCCTTTCGGCGACGCTGCAGGTG
GCGGCGGCGGCAAAGCCCTCGGAGGGGAATTTCTTAGGTTTTGATGCTGT
ATCCGTCAATTTTCCCTTCATTCTCCTGAAGCTCATCTAGGCGACTAGCT
ACAACTTATCGCCATGCCTTTTTTTCTTGAATATAGAACAACCTCATGAA
AAAAATATGATGTCTACTCTAGTAGCCCCATGCTGTGTAGGTTATGCGGT
ACTAAAGTCATTATTTGACCACGAGAGATGGCATTGACCGCATTGTTCAG
TATTAAGCAACGCTTTATTTTGTATCATCCACAGGACGCATGTCATGCGT
CCCTGCGAGACCTGCACATGATGGGTAATAACTTTATCAAAACGAAAACC
AGGGTAATGTTTGGCTTTCGTAGTTGCTCATCTTTTGTATATATTCAAAC
CTCCGATCATGCCAAGGTTTATTTAGAGGTTCTGAAAGTCGCTGGCGGTA
CCAGGTTGCCGCTCTTGACTTCACACGGAATCCGCGGCTATTCCGTCCTT
TCCTTCCAGCGACCCTCAAACCACTTCGACTGCAAGCCGTCATTCTCCAT
TTTTTCATTTTTTTTTTGTGGCGTTCCGGCATAAAGCTACAGCGCCGCAG
CTGCTTTTGGCCGTCGCGTAGATGGCAAGAGCAATGTCGAGAGACAAGGG
GGGGTTCGGTTCGGAAAATGGCGAATTGCGATTAGTCACGGAAAATGAAC
ATCTAGAAATCAATGTACGGATATAAAAACACGACGGAAAATCGTCAAGC
CGAATCGATCTTTGAGAATATTTTTCACTTTTTCTATACGGCTGAGTAAT
GACTCTTATTCACAAGACGAACACGTTTAGGGGAGGGGTCCATCTGCAAC
GCGAACAGCTGCTACGTACGGCACTTGCAGTACAACATCTATGTTTCTTG
TCCAGGAGGGGTGGGTGGATGTTGTTTCATGTACGGCTCTGTTTCGTTCG
GGCTGTGCTCGTGCGCAAAAGCAGCGGTATTTATTTTCTTCCGGTCTGAC
ATGTTTTGTTCAATTTTGTGTCGGTATATGCTGTAGAAATGCGGGTCCAA
GATGTCCAGCAGCACAACAACAGCGCCCTTAAGATATCGACACTTATATC
CACGGGCACTTAAGTGCTGCATCAGATATCCACTCTTGCTCAAGGCACTG
TCTACTTTTGTTTTTTCCTTGAAAGGAGAGGAGGAACCTTTGCCCAACAC
TTACCCCGATATTCGGGTTCGTGTGTCAGTTACCCGAAGGTCCGACTAGA
CAACCCGACGACTGTCCTGTGGGGAAGACACCCTGAGCGTTCGCCCGCCC
TTTGCTCAGGGTAGTGTGGGACTCGCACCCACAAAAACCCCCTATGTTGT
TCGCCTCAACTTGGCGCAGTGCACGCGCCGTCCTGCTCAGTGAGCTTCGG
CCCTAGGTGCCTACAACTTGGGCTTACTGGCGCCCTACAGTAGCCTAATC
TACATGGTACTGTGATATGTGGTACGGTGCTTTGCAGAAGGAGTATCGCT
CCTCAGTGATGAAAGCTTTTGCAAATTCAATTTTCACGAAGATCAAGAGG
CTGTTTAACTGCCGAAAAATCGCGGCTATCTTATGGGCACATGTACATCG
ATGATATTTTTTTCTGCTTCTGCACCACTTTCGGTGCCCCAAGCTATGAT
AGCACCCTAGTTTTGAGACTGTCGACGTTGAAGGATTTCTTGGGACAGAG
TTAAATGTGGTTTACTGTTGCGCAGGTGGGGGTTCGGGCGCTGGTGTGTC
GCGGGTTGGTGTGCTGCGCACTGTGGTTCAGTTTCAGGCAGCATGCATCT
CATGCGAAAACCTAAGCTCGGAGCATCCAAAACGCTCGTGTGTGTGTGTG
TGTGTGTGTATCCTCACCGAGTGGCGGTGGAGAGGCGAGCGTTTTAGTAT
CATACAGGGTGTTTGGCTCGAGCAGTACGGGATGAGATGAAACACTCATT
TTCATACACCAGCACTTCGCCTTGTCGACCGAGCAGCAGTGCGAGCTCTT
GCTCTCGCGCAATGAACGCTTATTTTGCAAAGCACCAGGCTAGTAAGGCT
GTTGTGCGGTGTGTTCAGTCTCGTCGCGGTTGCAACGTACGGTGTATCTT
CTGGTGCTGATGGATTGATGACTATATCATACGCAACGTTGAAGTATAAG
CTGCATCACCTCTGCATAACGATGTAGATAGCAATTGGATAGCTCTACAT
GTAAAGAATCAAAAATCGTAGAAACCAAATTTACCAAGAAATAAAGCGCT
GTGTGTGGTAAGAACCACTGTCCGTTGTTGTTTCGTCTTCCATATCACAA
AATTGACACGAGCATTGAGCATCACCACTTTTACACATAATCCCCCCCCC
CGTCACCCAACAGTACTATGCGAGGGCTCCGCGTTCGCGCCCAAGGCGGG
TGGTGCCCTTAACACCCCAGCCAAGAGCCACAACAACAGCAGCAAGGGCA
GGAAAAGGTCCGGGGGAGGCCTGCGGAGCATCTTCACGGGTCGGTCAGGG
GCGGTTAACACGCTAAGGGCAACCAATGACGGCGGCCGAAGGGATAACGG
GGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig5083:7387..12290+

>mRNA_H-paniculata_contig5083.12368.1 ID=mRNA_H-paniculata_contig5083.12368.1|Name=mRNA_H-paniculata_contig5083.12368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig5083:7387..12290+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGTGGGAAGACAGCGAGGGTCGTCGTTCATGAACAGGGTGACATG
CCTCGCGCTGGGGCTACAGCTGTGTTTAGATGGCGGTGGGAAGACAGCGA
GGGTCGTCGTTCATGAACAGGGTGACATGCCTCGCGCTGGGGCTACAGCT
GTGTTTAGTACTATGCGAGGGCTCCGCGTTCGCGCCCAAGGCGGGTGGTG
CCCTTAACACCCCAGCCAAGAGCCACAACAACAGCAGCAAGGGCAGGAAA
AGGTCCGGGGGAGGCCTGCGGAGCATCTTCACGGGTCGGTCAGGGGCGGT
TAACACGCTAAGGGCAACCAATGACGGCGGCCGAAGGGATAACGGGGTGT
ACTATGCGAGGGCTCCGCGTTCGCGCCCAAGGCGGGTGGTGCCCTTAACA
CCCCAGCCAAGAGCCACAACAACAGCAGCAAGGGCAGGAAAAGGTCCGGG
GGAGGCCTGCGGAGCATCTTCACGGGTCGGTCAGGGGCGGTTAACACGCT
AAGGGCAACCAATGACGGCGGCCGAAGGGATAACGGGGTG
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