mRNA_H-paniculata_contig50803.12366.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50803.12366.1
Unique NamemRNA_H-paniculata_contig50803.12366.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig50803.12366.1 vs. uniprot
Match: A0A8K1CA25_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA25_PYTOL)

HSP 1 Score: 57.0 bits (136), Expect = 7.260e-8
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   22 SQFKLHVEELEFVRHSMEAWKSDLHMPLGIDVFWQEHQEHQRGDTAPIVELLERWEIVY 198
            ++F L +EE++F+R SM AWK D+H+PL +D++W        G+    V LLERW + Y
Sbjct:   67 ARFNLDIEEIQFIRESMGAWKDDVHLPLMVDIYWD-------GERDKRV-LLERWTVAY 117
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BLAST of mRNA_H-paniculata_contig50803.12366.1 vs. uniprot
Match: K3WW66_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WW66_GLOUD)

HSP 1 Score: 49.3 bits (116), Expect = 3.770e-5
Identity = 22/59 (37.29%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:   22 SQFKLHVEELEFVRHSMEAWKSDLHMPLGIDVFWQEHQEHQRGDTAPIVELLERWEIVY 198
            ++F L +EE++FVR +M AW+ D+H+PL I ++     + QR        LLE+W ++Y
Sbjct:   39 ARFNLDIEEVQFVRDAMLAWREDVHLPLTIGIYLDSGGDDQRV-------LLEQWSVMY 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50803.12366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A8K1CA25_PYTOL7.260e-842.37Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WW66_GLOUD3.770e-537.29Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50803contigH-paniculata_contig50803:964..1161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue8e-12
Seed eggNOG ortholog2880.D7FKW0
Preferred nameATG13
KEGG koko:K08331
KEGG Pathwayko04136,ko04138,ko04140,ko04211,map04136,map04138,map04140,map04211
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000407,GO:0000422,GO:0001932,GO:0001934,GO:0002790,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005776,GO:0005829,GO:0006810,GO:0006914,GO:0006996,GO:0007005,GO:0007033,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009306,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016236,GO:0016237,GO:0019207,GO:0019220,GO:0019222,GO:0019887,GO:0019898,GO:0022411,GO:0022607,GO:0030234,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032147,GO:0032258,GO:0032268,GO:0032270,GO:0032940,GO:0032991,GO:0033036,GO:0033365,GO:0033674,GO:0034497,GO:0034613,GO:0034727,GO:0042325,GO:0042327,GO:0042886,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044085,GO:0044093,GO:0044237,GO:0044248,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0044804,GO:0044805,GO:0045184,GO:0045859,GO:0045860,GO:0045937,GO:0046903,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051641,GO:0060255,GO:0061695,GO:0061726,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072665,GO:0080090,GO:0098772,GO:1902494,GO:1902554,GO:1902911,GO:1903008,GO:1905037,GO:1990234,GO:1990316
EggNOG free text desc.process utilizing autophagic mechanism
EggNOG OGsKOG4573@1,KOG4573@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04131
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930491.3412032-CDS-H-paniculata_contig50803:963..11611622930491.3412032-CDS-H-paniculata_contig50803:963..1161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50803 964..1161 +
1691481316.1139646-CDS-H-paniculata_contig50803:963..11611691481316.1139646-CDS-H-paniculata_contig50803:963..1161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50803 964..1161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50803.12366.1prot_H-paniculata_contig50803.12366.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50803 964..1161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50803.12366.1

>prot_H-paniculata_contig50803.12366.1 ID=prot_H-paniculata_contig50803.12366.1|Name=mRNA_H-paniculata_contig50803.12366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
LLRCGPFSQFKLHVEELEFVRHSMEAWKSDLHMPLGIDVFWQEHQEHQRG
DTAPIVELLERWEIVY
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mRNA from alignment at H-paniculata_contig50803:964..1161+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50803.12366.1 ID=mRNA_H-paniculata_contig50803.12366.1|Name=mRNA_H-paniculata_contig50803.12366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig50803:964..1161+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCTCCGCTGTGGACCGTTCTCACAGTTTAAATTACATGTCGAAGAGCT
CGAGTTTGTCCGCCACTCTATGGAAGCATGGAAAAGTGATCTTCACATGC
CTCTAGGCATCGATGTGTTTTGGCAAGAGCACCAAGAGCACCAGCGAGGC
GATACGGCTCCAATCGTCGAGCTGCTGGAACGTTGGGAGATTGTGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig50803:964..1161+

>mRNA_H-paniculata_contig50803.12366.1 ID=mRNA_H-paniculata_contig50803.12366.1|Name=mRNA_H-paniculata_contig50803.12366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig50803:964..1161+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCTCCGCTGTGGACCGTTCTCACAGTTTAAATTACATGTCGAAGAGCT
CGAGTTTGTCCGCCACTCTATGGAAGCATGGAAAAGTGATCTTCACATGC
CTCTAGGCATCGATGTGTTTTGGCAAGAGCACCAAGAGCACCAGCGAGGC
GATACGGCTCCAATCGTCGAGCTGCTGGAACGTTGGGAGATTGTGTACCT
TCTCCGCTGTGGACCGTTCTCACAGTTTAAATTACATGTCGAAGAGCTCG
AGTTTGTCCGCCACTCTATGGAAGCATGGAAAAGTGATCTTCACATGCCT
CTAGGCATCGATGTGTTTTGGCAAGAGCACCAAGAGCACCAGCGAGGCGA
TACGGCTCCAATCGTCGAGCTGCTGGAACGTTGGGAGATTGTGTAC
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