mRNA_H-paniculata_contig5080.12365.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5080.12365.1
Unique NamemRNA_H-paniculata_contig5080.12365.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5080.12365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5080contigH-paniculata_contig5080:4867..5310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size445
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930491.2628467-CDS-H-paniculata_contig5080:4866..52141622930491.2628467-CDS-H-paniculata_contig5080:4866..5214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5080 4867..5214 +
1691481316.093736-CDS-H-paniculata_contig5080:4866..52141691481316.093736-CDS-H-paniculata_contig5080:4866..5214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5080 4867..5214 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930491.2985585-UTR-H-paniculata_contig5080:5214..53101622930491.2985585-UTR-H-paniculata_contig5080:5214..5310Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5080 5215..5310 +
1691481316.1034799-UTR-H-paniculata_contig5080:5214..53101691481316.1034799-UTR-H-paniculata_contig5080:5214..5310Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5080 5215..5310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5080.12365.1prot_H-paniculata_contig5080.12365.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5080 4867..5214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5080.12365.1

>prot_H-paniculata_contig5080.12365.1 ID=prot_H-paniculata_contig5080.12365.1|Name=mRNA_H-paniculata_contig5080.12365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
FGEGGGTTTYITSPSIILPKHAERQSNNEDHAPASINYPPEHVAGRGTSR
IGITRRNRISGQQKNLHFPHRFCSLFLPPPALPWGTHIQTDTTLHAKPLL
YTSPTPPQVAAPNAG*
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mRNA from alignment at H-paniculata_contig5080:4867..5310+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5080.12365.1 ID=mRNA_H-paniculata_contig5080.12365.1|Name=mRNA_H-paniculata_contig5080.12365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=444bp|location=Sequence derived from alignment at H-paniculata_contig5080:4867..5310+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGGGGAGGGGGGGGGAACTACAACGTACATCACATCACCATCAATTAT
ACTCCCAAAACATGCCGAACGTCAAAGCAATAATGAAGACCACGCACCCG
CCTCCATAAATTATCCCCCGGAACACGTGGCGGGTCGAGGAACGTCCCGA
ATCGGGATAACACGACGTAACCGTATATCCGGGCAACAAAAAAATCTACA
TTTCCCTCATCGTTTCTGTTCGCTTTTCCTCCCGCCCCCCGCCCTGCCCT
GGGGCACACACATACAAACAGACACAACCCTGCACGCCAAGCCACTCCTC
TACACCTCGCCCACACCGCCCCAGGTGGCCGCCCCAAACGCTGGCTGATG
TGAACACTGCCGTCGCGCACCGTTAGTACCTCCTGGTCGTACCCCGTTGC
CTGCACCACCCCCTACACCCAACCACCCTGATTTTTGCCGGCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig5080:4867..5310+

>mRNA_H-paniculata_contig5080.12365.1 ID=mRNA_H-paniculata_contig5080.12365.1|Name=mRNA_H-paniculata_contig5080.12365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig5080:4867..5310+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGGGGAGGGGGGGGGAACTACAACGTACATCACATCACCATCAATTAT
ACTCCCAAAACATGCCGAACGTCAAAGCAATAATGAAGACCACGCACCCG
CCTCCATAAATTATCCCCCGGAACACGTGGCGGGTCGAGGAACGTCCCGA
ATCGGGATAACACGACGTAACCGTATATCCGGGCAACAAAAAAATCTACA
TTTCCCTCATCGTTTCTGTTCGCTTTTCCTCCCGCCCCCCGCCCTGCCCT
GGGGCACACACATACAAACAGACACAACCCTGCACGCCAAGCCACTCCTC
TACACCTCGCCCACACCGCCCCAGGTGGCCGCCCCAAACGCTGGCTGATT
CGGGGAGGGGGGGGGAACTACAACGTACATCACATCACCATCAATTATAC
TCCCAAAACATGCCGAACGTCAAAGCAATAATGAAGACCACGCACCCGCC
TCCATAAATTATCCCCCGGAACACGTGGCGGGTCGAGGAACGTCCCGAAT
CGGGATAACACGACGTAACCGTATATCCGGGCAACAAAAAAATCTACATT
TCCCTCATCGTTTCTGTTCGCTTTTCCTCCCGCCCCCCGCCCTGCCCTGG
GGCACACACATACAAACAGACACAACCCTGCACGCCAAGCCACTCCTCTA
CACCTCGCCCACACCGCCCCAGGTGGCCGCCCCAAACGCTGGCTGA
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