mRNA_H-paniculata_contig508.12364.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig508.12364.1
Unique NamemRNA_H-paniculata_contig508.12364.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig508.12364.1 vs. uniprot
Match: D7FHP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHP9_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.230e-20
Identity = 54/105 (51.43%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:    1 ALKMTTISSCTQVKIDDGKFFGGQDLPLWLCDRLNEELAFSAALRKELEKEQMVSREQLDRLTXXXXXXXXXXXXXXEELYATERRLNDTIEALRLQKDLRMKEM 315
            AL    +    +VKIDDG FFGGQDL  WLC RL +ELAFSA +RKEL+ E++ S  + DRL+               EL   ERRL DT EAL  QK LRMKEM
Sbjct:    4 ALSEIEVIDVFKVKIDDGTFFGGQDLVEWLCSRLKQELAFSAEVRKELQGERLASSREFDRLSENEKRLKNELRDKQSELETAERRLLDTTEALHSQKQLRMKEM 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig508.12364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHP9_ECTSI2.230e-2051.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig508contigH-paniculata_contig508:35976..36564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_006260.1
Exons2
Model size315
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig508.12364.1prot_H-paniculata_contig508.12364.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig508 35976..36555 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930491.1695194-CDS-H-paniculata_contig508:35975..361081622930491.1695194-CDS-H-paniculata_contig508:35975..36108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig508 35976..36108 -
1691481316.064109-CDS-H-paniculata_contig508:35975..361081691481316.064109-CDS-H-paniculata_contig508:35975..36108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig508 35976..36108 -
1622930491.1892602-CDS-H-paniculata_contig508:36382..365551622930491.1892602-CDS-H-paniculata_contig508:36382..36555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig508 36383..36555 -
1691481316.075063-CDS-H-paniculata_contig508:36382..365551691481316.075063-CDS-H-paniculata_contig508:36382..36555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig508 36383..36555 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930491.2027025-UTR-H-paniculata_contig508:36555..365641622930491.2027025-UTR-H-paniculata_contig508:36555..36564Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig508 36556..36564 -
1691481316.0843232-UTR-H-paniculata_contig508:36555..365641691481316.0843232-UTR-H-paniculata_contig508:36555..36564Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig508 36556..36564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig508.12364.1

>prot_H-paniculata_contig508.12364.1 ID=prot_H-paniculata_contig508.12364.1|Name=mRNA_H-paniculata_contig508.12364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MTTISSCTQVKIDDGKFFGGQDLPLWLCDRLNEELAFSAALRKELEKEQM
VSREQLDRLTEVEKEIKDKLGKAEEELYATERRLNDTIEALRLQKDLRMK
EM
back to top

mRNA from alignment at H-paniculata_contig508:35976..36564-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig508.12364.1 ID=mRNA_H-paniculata_contig508.12364.1|Name=mRNA_H-paniculata_contig508.12364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=589bp|location=Sequence derived from alignment at H-paniculata_contig508:35976..36564- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCACTGAAAATGACCACCATCTCATCATGTACACAGGTTAAAATTGACGA
TGGAAAATTCTTTGGAGGGCAGGATCTGCCCTTGTGGCTGTGCGATAGAT
TGAACGAAGAGTTGGCCTTTAGCGCTGCTCTTCGGAAAGAGCTAGAGAAA
GAGCAAATGGTTTCTCGCGAGCAGTTGGACCGGTGAGGGAAGACGAATGC
AACTACATGCAGTAGTTCTAGTTCTTGGGGACATTTTTTCCTTTCGCCGC
TTCGACGAGATTAATAGTACGAACTGAGATATTGTTTACTTTGAACTTCG
AAGCCTTAAAAGAGCGCTAGCGGTTCGCTTTTATGATTTTCTCGTGATGA
ATCAGTTTTTAGGATAGAACGTGCTAAAGGTTGGCGCGATCTCCACTTGA
TTGACTTCTCTCTTATCCTTCGTGCTTTTTCATCGTGAATGAAAATGCCA
TTGGAGGCTAACCGAGGTCGAGAAGGAGATAAAAGACAAGCTTGGGAAAG
CTGAGGAGGAGCTCTACGCAACGGAACGACGCTTGAATGACACCATTGAA
GCGCTTCGGCTTCAGAAAGACCTGCGCATGAAAGAAATG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig508:35976..36564-

>mRNA_H-paniculata_contig508.12364.1 ID=mRNA_H-paniculata_contig508.12364.1|Name=mRNA_H-paniculata_contig508.12364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig508:35976..36564- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCACCATCTCATCATGTACACAGGTTAAAATTGACGATGGAAAATT
CTTTGGAGGGCAGGATCTGCCCTTGTGGCTGTGCGATAGATTGAACGAAG
AGTTGGCCTTTAGCGCTGCTCTTCGGAAAGAGCTAGAGAAAGAGCAAATG
GTTTCTCGCGAGCAGTTGGACCGATGACCACCATCTCATCATGTACACAG
GTTAAAATTGACGATGGAAAATTCTTTGGAGGGCAGGATCTGCCCTTGTG
GCTGTGCGATAGATTGAACGAAGAGTTGGCCTTTAGCGCTGCTCTTCGGA
AAGAGCTAGAGAAAGAGCAAATGGTTTCTCGCGAGCAGTTGGACCGGCTA
ACCGAGGTCGAGAAGGAGATAAAAGACAAGCTTGGGAAAGCTGAGGAGGA
GCTCTACGCAACGGAACGACGCTTGAATGACACCATTGAAGCGCTTCGGC
TTCAGAAAGACCTGCGCATGAAAGAAATGGCTAACCGAGGTCGAGAAGGA
GATAAAAGACAAGCTTGGGAAAGCTGAGGAGGAGCTCTACGCAACGGAAC
GACGCTTGAATGACACCATTGAAGCGCTTCGGCTTCAGAAAGACCTGCGC
ATGAAAGAAATG
back to top