mRNA_H-paniculata_contig50774.12360.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig50774.12360.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS) HSP 1 Score: 174 bits (441), Expect = 1.390e-49 Identity = 88/200 (44.00%), Postives = 128/200 (64.00%), Query Frame = 1
Query: 4 TGTRPDIAYAVHQATRRMEDPCQEDFSTCKRIYRYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTRYVLKLNGGAIRWCSRKQQLLTWSSTEVEYVAAGEAGKETVYLRELLGSIGFGCRESTTLFEDNKAAINLNKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLAGILTKGLSGVKFQRL 603
T TRPD+ Y+V+ +R ME+P ++ KRI RY+ GI + + G L GFVD+D+A DV+DRKST+ YV L GGA+ W S+KQ ++T S+TE E+VAA + ++LR +LG IG+ E TTLF DN + I L+K H R+KHI VR++ +R+ + E ++ LK+ T DQL+ I+TK + F+RL
Sbjct: 167 TATRPDLIYSVNLVSRYMENPNEQHLLAAKRILRYVQGTCGFGIRYK-QGEGEKLVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQLSDIMTKAVKLEVFERL 365
BLAST of mRNA_H-paniculata_contig50774.12360.1 vs. uniprot
Match: UPI000901F676 (uncharacterized protein LOC109128812 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000901F676) HSP 1 Score: 172 bits (436), Expect = 2.130e-49 Identity = 87/204 (42.65%), Postives = 128/204 (62.75%), Query Frame = 1
Query: 4 TGTRPDIAYAVHQATRRMEDPCQEDFSTCKRIYRYLSTVPDLGITF--GGKSNGHGLEGFVDADWAEDVEDRKSTTRYVLKLNGGAIRWCSRKQQLLTWSSTEVEYVAAGEAGKETVYLRELLGSIGFGCRESTTLFEDNKAAINLNKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLAGILTKGLSGVKFQRLIN 609
T TRPD+ Y+V+ +R ME P ++ +T KRI RY+ D GI + GG+ L G+VD+D+A DV+D KST YV L GGA+ W S+KQ ++T S+TE E+V+ V+LR ++ IG +E TT+F DN +AI L+K H R+KHI VR+H +RE + +G++ L Y T DQ++ I+TK + F++L N
Sbjct: 115 TATRPDLIYSVNLVSRYMERPNEQHMATAKRILRYVQGTRDFGIQYKYGGEQK---LVGYVDSDYAGDVDDFKSTFEYVFMLGGGAVSWVSKKQPIVTLSTTEAEFVSVAYGACHAVWLRNIMAEIGSEQKEGTTMFCDNSSAIKLSKNPVLHGRSKHIHVRFHYLRELVNDGVIQLDYCSTHDQISDIMTKAVKLEAFEKLKN 315
BLAST of mRNA_H-paniculata_contig50774.12360.1 vs. uniprot
Match: A0A090C2V0_HYAAE (RxLR effector candidate protein (Fragment) n=3 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=A0A090C2V0_HYAAE) HSP 1 Score: 171 bits (432), Expect = 3.170e-49 Identity = 86/199 (43.22%), Postives = 123/199 (61.81%), Query Frame = 1
Query: 10 TRPDIAYAVHQATRRMEDPCQEDFSTCKRIYRYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTRYVLKLNGGAIRWCSRKQQLLTWSSTEVEYVAAGEAGKETVYLRELLGSIG-FGCRESTTLFEDNKAAINLNKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLAGILTKGLSGVKFQRL 603
TRPD+A AV ++ DPC + KR+ RYL P+ G+ F + G + G+ DADWA D+E R+ST+ YV +NGG I W S+KQ+ + SSTE EY+A EA KE V+L+ LG +G E+ +FEDN+ +I L K H RTKHI +R+H +RE + G + L+Y T D LA ++TK ++ V+F+ L
Sbjct: 51 TRPDLAAAVGSLSQFSSDPCPTHWQALKRVLRYLQATPNHGLEFT-REEGSRICGYTDADWAGDIESRRSTSGYVFMMNGGCISWKSQKQRTVALSSTEAEYMALSEATKEAVWLKVFLGELGEMTSDEAIKMFEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVESGEVILEYCSTQDMLADMMTKPIAAVQFESL 248
BLAST of mRNA_H-paniculata_contig50774.12360.1 vs. uniprot
Match: UPI001AE8F203 (secreted RxLR effector protein 161-like n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI001AE8F203) HSP 1 Score: 167 bits (424), Expect = 2.390e-48 Identity = 88/204 (43.14%), Postives = 124/204 (60.78%), Query Frame = 1
Query: 1 STGTRPDIAYAVHQATRRMEDPCQEDFSTCKRIYRYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTRYVLKLNGGAIRWCSRKQQLLTWSSTEVEYVAAGEAGKETVYLRELLGSIGFGCRESTTLFEDNKAAINLNKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLAGILTKGLSGVKFQRLINL 612
ST TRPD+A+AV + R + P E + K I RYL +LG+ + KSN L GF D+DWA D +DRKST+ Y+ N G I W S+KQ+ + S+ + EY+A A +E +++R LL +I C T +FEDN++ I+L K H R KHI +R+H RE + + L Y Q+ D +A +LTKGLS VKF +L+NL
Sbjct: 48 STRTRPDLAFAVGELARYCDAPGSEHWVALKIILRYLKNTKNLGLCYR-KSNKGELVGFSDSDWAGDHDDRKSTSGYIFLYNEGPISWKSQKQRSVALSTVKAEYMALSAASQECIWIRNLLCNIERSCDSPTVIFEDNQSTISLTKNPQYHGRAKHIDIRYHFTRELVEANKITLVYCQSEDMVADMLTKGLSKVKFVKLLNL 250
BLAST of mRNA_H-paniculata_contig50774.12360.1 vs. uniprot
Match: UPI0006A737CF (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A737CF) HSP 1 Score: 169 bits (429), Expect = 3.930e-48 Identity = 87/202 (43.07%), Postives = 126/202 (62.38%), Query Frame = 1
Query: 4 TGTRPDIAYAVHQATRRMEDPCQEDFSTCKRIYRYLSTVPDLGITF--GGKSNGHGLEGFVDADWAEDVEDRKSTTRYVLKLNGGAIRWCSRKQQLLTWSSTEVEYVAAGEAGKETVYLRELLGSIGFGCRESTTLFEDNKAAINLNKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLAGILTKGLSGVKFQRL 603
T TRPD+ Y+V+ +R ME+P +E K I RY+ GI + GG+ L G+VD+D+A D +DRKST+ + GGA+ W S+KQ ++T S+TE EYVAA + V++R +L IGFG + T LF DN +AI L+K H R+KHI VR+H +RE + EGI++ +Y T +QLA I+TK + F++L
Sbjct: 135 TATRPDLIYSVNVVSRYMENPREEHMMAVKHIMRYVKGTAGFGIQYLCGGEEK---LVGYVDSDYAGDEDDRKSTSGFTFMFGGGAVSWSSKKQPIVTLSTTEAEYVAAANGACQAVWMRNMLTEIGFGQGDGTVLFCDNSSAIKLSKNLVLHGRSKHIHVRFHFLRELVNEGIISTEYCSTHEQLADIMTKPVKLEVFEKL 333
BLAST of mRNA_H-paniculata_contig50774.12360.1 vs. uniprot
Match: H3G656_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G656_PHYRM) HSP 1 Score: 165 bits (417), Expect = 9.870e-48 Identity = 82/199 (41.21%), Postives = 123/199 (61.81%), Query Frame = 1
Query: 10 TRPDIAYAVHQATRRMEDPCQEDFSTCKRIYRYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTRYVLKLNGGAIRWCSRKQQLLTWSSTEVEYVAAGEAGKETVYLRELLGSIG-FGCRESTTLFEDNKAAINLNKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLAGILTKGLSGVKFQRL 603
TRPD+A AV ++ DPC + KR+ RYL P G+ F + + G+ G+ DADWA D+E R+ST+ Y +NGG I W S+KQ+ + SSTE EY+A EA +E V+L+ L +G E+ +++DN+ +I L K H RTKHI +R+H +RE + +G + L+Y+ T D LA I+TK ++ V+F+ L
Sbjct: 21 TRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYKDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYISTTDMLADIMTKAITAVQFRVL 218
BLAST of mRNA_H-paniculata_contig50774.12360.1 vs. uniprot
Match: UPI00193C8901 (secreted RxLR effector protein 161-like n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193C8901) HSP 1 Score: 163 bits (413), Expect = 3.730e-47 Identity = 85/205 (41.46%), Postives = 124/205 (60.49%), Query Frame = 1
Query: 1 STGTRPDIAYAVHQATRRMEDPCQEDFSTCKRIYRYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTRYVLKLNGGAIRWCSRKQQLLTWSSTEVEYVAAGEAGKETVYLRELLGSIGFGCRESTTLFEDNKAAINLNKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLAGILTKGLSGVKFQRLINLL 615
+T TRPDIA+AV + + + + ++ KRI RYL D G+ + + +EG+VDAD+AED+E R+STT YV L GA+ W +++Q+++T S+TE EYVAA A KE ++LR LL + C +T +F DN++ + L + S H RTKHI VR H IRE + G + K V T Q A + TK L +F+ L L+
Sbjct: 4 ATVTRPDIAFAVGKVSAFLNNHDVNHWNAVKRIIRYLLNTVDRGVLYESGGSNEEIEGYVDADFAEDLETRRSTTGYVFLLGNGAVTWTAQRQKMVTISTTEAEYVAAAAAAKEAIWLRRLLSGLERNCNRATKVFIDNQSTLRLVQNSEFHKRTKHIDVRCHFIREKVLSGKIDTKCVNTTKQKADLFTKALPRDRFKALCQLI 208
BLAST of mRNA_H-paniculata_contig50774.12360.1 vs. uniprot
Match: UPI001372DC10 (Ty1/Copia family RNAse HI domain-containing protein n=3 Tax=Bacteria TaxID=2 RepID=UPI001372DC10) HSP 1 Score: 166 bits (421), Expect = 3.930e-47 Identity = 84/200 (42.00%), Postives = 122/200 (61.00%), Query Frame = 1
Query: 7 GTRPDIAYAVHQATRRMEDPCQEDFSTCKRIYRYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTRYVLKLNGGAIRWCSRKQQLLTWSSTEVEYVAAGEAGKETVYLRELLGSIG-FGCRESTTLFEDNKAAINLNKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLAGILTKGLSGVKFQRL 603
GTRPD+A AV ++ DPC + KR++RY+ G+ F S GL+G+ DADWA D+E R+ST+ Y +NGG I W S+KQ+ + SSTE EY+A EA +E V+L+ L +G E+ ++EDN+ +I L K H RTKHI +R+H +RE + +G + L+YV T D LA I+TK ++ +F L
Sbjct: 99 GTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIRGTKTHGLVFQASSE-DGLQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTLDMLADIMTKPIAAPQFDAL 297
BLAST of mRNA_H-paniculata_contig50774.12360.1 vs. uniprot
Match: A0A1J3D358_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D358_NOCCA) HSP 1 Score: 170 bits (430), Expect = 6.440e-47 Identity = 87/201 (43.28%), Postives = 126/201 (62.69%), Query Frame = 1
Query: 4 TGTRPDIAYAVHQATRRMEDPCQEDFSTCKRIYRYLSTVPDLGITFGGKSNGH-GLEGFVDADWAEDVEDRKSTTRYVLKLNGGAIRWCSRKQQLLTWSSTEVEYVAAGEAGKETVYLRELLGSIGFGCRESTTLFEDNKAAINLNKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLAGILTKGLSGVKFQRL 603
T TRPD+ + V +R M +P + +T KRI RYL D GI + + G L G+ D+D+A D++D KST+ YV L+GGA+ W SRKQ ++T SSTE EYVAA + ++++ +LG IGF + TLF DN + I L+K + H ++KHI VR+H +RE +EG++ L + T +QLA I+TK L FQR+
Sbjct: 281 TATRPDLMFVVCLISRFMANPTELHLATAKRIMRYLKGTLDFGIWYRRERKGSLSLLGYTDSDYAGDIDDCKSTSGYVFLLSGGAVAWSSRKQPIVTLSSTEAEYVAAATCACQAIWMKRVLGEIGFEQEDGMTLFCDNTSTIKLSKNAVMHGKSKHIRVRYHFLRELSKEGLVTLVHCNTEEQLADIMTKPLKMASFQRI 481
BLAST of mRNA_H-paniculata_contig50774.12360.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT) HSP 1 Score: 165 bits (418), Expect = 6.960e-47 Identity = 83/205 (40.49%), Postives = 123/205 (60.00%), Query Frame = 1
Query: 1 STGTRPDIAYAVHQATRRMEDPCQEDFSTCKRIYRYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTRYVLKLNGGAIRWCSRKQQLLTWSSTEVEYVAAGEAGKETVYLRELLGSIGFGCRESTTLFEDNKAAINLNKGSGAHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLAGILTKGLSGVKFQRLINLL 615
+T TRPD+A AV ++ M P +E + KR+ RY+ + G+ F GKS L G+ DADWA D++ R+ST+ YV ++NG + WCS++Q +T S+TE EYVA A +E V+LR LL IG + + + EDN+ AI L+K H RTKHI V +H +RE + + + + Y T LA ++TK L FQ+ ++L
Sbjct: 97 TTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVREKVGDKSINVNYCSTDKMLADVMTKSLPRQTFQKFRDML 301 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50774.12360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig50774.12360.1 >prot_H-paniculata_contig50774.12360.1 ID=prot_H-paniculata_contig50774.12360.1|Name=mRNA_H-paniculata_contig50774.12360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp STGTRPDIAYAVHQATRRMEDPCQEDFSTCKRIYRYLSTVPDLGITFGGKback to top mRNA from alignment at H-paniculata_contig50774:4..624+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig50774.12360.1 ID=mRNA_H-paniculata_contig50774.12360.1|Name=mRNA_H-paniculata_contig50774.12360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=621bp|location=Sequence derived from alignment at H-paniculata_contig50774:4..624+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig50774:4..624+ >mRNA_H-paniculata_contig50774.12360.1 ID=mRNA_H-paniculata_contig50774.12360.1|Name=mRNA_H-paniculata_contig50774.12360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at H-paniculata_contig50774:4..624+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |