mRNA_H-paniculata_contig50761.12357.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50761.12357.1
Unique NamemRNA_H-paniculata_contig50761.12357.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig50761.12357.1 vs. uniprot
Match: D7G0H1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H1_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.850e-22
Identity = 48/62 (77.42%), Postives = 55/62 (88.71%), Query Frame = 1
Query:    1 QGAGLTLGEEFDVLRQAVHASPDIREWVLQEYVDRPLLAEGRKFHLRAYALAGGNFLVVYVY 186
            +GAGL LGE+F+ LR+A+H SPDIREWVLQEYV+RPLLAEGRKFHLRAYALA G  + VYVY
Sbjct:  291 KGAGLALGEDFETLRRAIHDSPDIREWVLQEYVERPLLAEGRKFHLRAYALAVGC-IQVYVY 351          
BLAST of mRNA_H-paniculata_contig50761.12357.1 vs. uniprot
Match: A0A835ZQ42_9STRA (Tubulin-tyrosine ligase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ42_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.760e-15
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    1 QGAGLTLGEEFDVLRQAVHASPDIREWVLQEYVDRPLLAEGRKFHLRAYALAGGNFLVVYVY 186
            +GAG+ L  +F+ LR  VHA+ DIREWVLQEY++RPLL  GRKFHLRAY LA G  L VY++
Sbjct:  195 KGAGVHLVTDFNDLRDVVHANHDIREWVLQEYIERPLLVHGRKFHLRAYVLAVGC-LSVYLF 255          
BLAST of mRNA_H-paniculata_contig50761.12357.1 vs. uniprot
Match: A0A0P1AGQ2_PLAHL (Tubulin tyrosine ligase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AGQ2_PLAHL)

HSP 1 Score: 70.1 bits (170), Expect = 1.480e-12
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 QGAGLTLGEEFDVLRQAVHASPDIREWVLQEYVDRPLLAEGRKFHLRAYALAGGNFLVVYVY 186
            +GA + L  +F  LR  V+   DIREWV+QEY++RPLL  GRKFH+RAY LA G  + VYVY
Sbjct:  181 KGAEVNLIRDFQKLRSIVNEWTDIREWVVQEYIERPLLLRGRKFHIRAYVLAVGG-IKVYVY 241          
BLAST of mRNA_H-paniculata_contig50761.12357.1 vs. uniprot
Match: A0A3M6VV58_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VV58_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.120e-12
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 QGAGLTLGEEFDVLRQAVHASPDIREWVLQEYVDRPLLAEGRKFHLRAYALAGGNFLVVYVY 186
            +GA + + ++F+ LR  V+   DIREWV+QEY++RPLL  GRKFH+R Y LA G  L V+VY
Sbjct:  180 KGAEVNVVKDFEKLRSIVNEWTDIREWVVQEYIERPLLLRGRKFHIRVYVLAVGG-LKVFVY 240          
BLAST of mRNA_H-paniculata_contig50761.12357.1 vs. uniprot
Match: A0A3F2S2G2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S2G2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.340e-11
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 QGAGLTLGEEFDVLRQAVHASPDIREWVLQEYVDRPLLAEGRKFHLRAYALAGGNFLVVYVY 186
            +GA + + ++F  LR  V+   DIREWV+QEY+ RPLL  GRKFH+R Y LA G  L VYVY
Sbjct:  181 KGAEVNVVKDFSKLRGIVNEWTDIREWVVQEYIQRPLLLRGRKFHIRVYVLAVGG-LKVYVY 241          
BLAST of mRNA_H-paniculata_contig50761.12357.1 vs. uniprot
Match: M4BXS8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXS8_HYAAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.340e-11
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 QGAGLTLGEEFDVLRQAVHASPDIREWVLQEYVDRPLLAEGRKFHLRAYALAGGNFLVVYVY 186
            +GA + + ++F  LR  V+   DIREWV+QEY++RPLL  GRKFH+RAY LA G  L V+VY
Sbjct:  184 KGAEVNVIKDFQKLRTIVNEWTDIREWVVQEYMERPLLLRGRKFHIRAYVLAVGG-LKVFVY 244          
BLAST of mRNA_H-paniculata_contig50761.12357.1 vs. uniprot
Match: I0YXW3_COCSC (YccV-like domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YXW3_COCSC)

HSP 1 Score: 67.4 bits (163), Expect = 1.380e-11
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 QGAGLTLGEEFDVLRQAVHASPDIREWVLQEYVDRPLLAEGRKFHLRAYALAGGNFLVVYVYT 189
            Q  G+ + +    LR+A+  +  +REWVLQ Y+DRPLL  GRKFH+RAY L  G+ L VYVY+
Sbjct:  516 QALGIFIFDRVSALREALQQADGMREWVLQRYIDRPLLINGRKFHIRAYVLCVGS-LSVYVYS 577          
BLAST of mRNA_H-paniculata_contig50761.12357.1 vs. uniprot
Match: A0A329SV66_9STRA (ATP-grasp domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=A0A329SV66_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.500e-11
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 QGAGLTLGEEFDVLRQAVHASPDIREWVLQEYVDRPLLAEGRKFHLRAYALAGGNFLVVYVY 186
            +GA + + + F  LR  V+   DIREWV+QEY+ RPLL  GRKFH+R Y LA G  L VYVY
Sbjct:  181 KGAEVNVIKNFKKLRSIVNEWTDIREWVVQEYIQRPLLLRGRKFHIRVYVLAVGG-LKVYVY 241          
BLAST of mRNA_H-paniculata_contig50761.12357.1 vs. uniprot
Match: H3HAW4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HAW4_PHYRM)

HSP 1 Score: 66.2 bits (160), Expect = 2.640e-11
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 QGAGLTLGEEFDVLRQAVHASPDIREWVLQEYVDRPLLAEGRKFHLRAYALAGGNFLVVYVY 186
            +GA + + ++F  LR  V+   DIREWV+QEY+ RPLL  GRKFH+R Y LA G  L V+VY
Sbjct:   66 KGAEVNVVKDFKKLRSIVNEWTDIREWVVQEYIQRPLLLRGRKFHIRVYVLAVGG-LKVFVY 126          
BLAST of mRNA_H-paniculata_contig50761.12357.1 vs. uniprot
Match: A0A5J4XGU1_9CHLO (Tubulin tyrosine ligase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XGU1_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 4.730e-11
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    1 QGAGLTLGEEFDVLRQAVHASPDIREWVLQEYVDRPLLAEGRKFHLRAYALAGGNFLVVYVY 186
            Q  G+ + +    L  A+HA+ D+REWVLQ Y++RPLL + RKFHLR Y L  G+ L  YVY
Sbjct:  183 QATGICIFDRVSQLEAALHANQDLREWVLQRYIERPLLIQQRKFHLRVYVLCVGS-LKAYVY 243          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50761.12357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0H1_ECTSI1.850e-2277.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZQ42_9STRA2.760e-1562.90Tubulin-tyrosine ligase family-domain-containing p... [more]
A0A0P1AGQ2_PLAHL1.480e-1256.45Tubulin tyrosine ligase n=1 Tax=Plasmopara halsted... [more]
A0A3M6VV58_9STRA7.120e-1253.23Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A3F2S2G2_9STRA1.340e-1154.84Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
M4BXS8_HYAAE1.340e-1154.84Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
I0YXW3_COCSC1.380e-1150.79YccV-like domain-containing protein n=1 Tax=Coccom... [more]
A0A329SV66_9STRA2.500e-1154.84ATP-grasp domain-containing protein n=16 Tax=Phyto... [more]
H3HAW4_PHYRM2.640e-1153.23Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A5J4XGU1_9CHLO4.730e-1150.00Tubulin tyrosine ligase n=1 Tax=Trebouxia sp. A1-2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50761contigH-paniculata_contig50761:247..435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue1.9e-18
Seed eggNOG ortholog2880.D7G0H1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein polyglycylation
EggNOG OGsKOG2157@1,KOG2157@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930490.653518-CDS-H-paniculata_contig50761:246..4351622930490.653518-CDS-H-paniculata_contig50761:246..435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50761 247..435 -
1691481315.8730974-CDS-H-paniculata_contig50761:246..4351691481315.8730974-CDS-H-paniculata_contig50761:246..435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50761 247..435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50761.12357.1prot_H-paniculata_contig50761.12357.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50761 247..435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50761.12357.1

>prot_H-paniculata_contig50761.12357.1 ID=prot_H-paniculata_contig50761.12357.1|Name=mRNA_H-paniculata_contig50761.12357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
QGAGLTLGEEFDVLRQAVHASPDIREWVLQEYVDRPLLAEGRKFHLRAYA
LAGGNFLVVYVYT
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mRNA from alignment at H-paniculata_contig50761:247..435-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50761.12357.1 ID=mRNA_H-paniculata_contig50761.12357.1|Name=mRNA_H-paniculata_contig50761.12357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at H-paniculata_contig50761:247..435- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGAGCGGGGTTGACGCTCGGAGAAGAGTTCGACGTGCTTCGACAGGC GGTGCATGCCTCGCCCGATATCAGGGAGTGGGTTCTGCAGGAGTACGTGG ACAGGCCGTTGCTCGCCGAGGGGCGCAAGTTTCACCTCCGGGCGTACGCG CTGGCCGGTGGGAACTTTTTAGTCGTGTATGTGTATACT
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Coding sequence (CDS) from alignment at H-paniculata_contig50761:247..435-

>mRNA_H-paniculata_contig50761.12357.1 ID=mRNA_H-paniculata_contig50761.12357.1|Name=mRNA_H-paniculata_contig50761.12357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig50761:247..435- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGAGCGGGGTTGACGCTCGGAGAAGAGTTCGACGTGCTTCGACAGGC
GGTGCATGCCTCGCCCGATATCAGGGAGTGGGTTCTGCAGGAGTACGTGG
ACAGGCCGTTGCTCGCCGAGGGGCGCAAGTTTCACCTCCGGGCGTACGCG
CTGGCCGGTGGGAACTTTTTAGTCGTGTATGTGTATACTCAGGGAGCGGG
GTTGACGCTCGGAGAAGAGTTCGACGTGCTTCGACAGGCGGTGCATGCCT
CGCCCGATATCAGGGAGTGGGTTCTGCAGGAGTACGTGGACAGGCCGTTG
CTCGCCGAGGGGCGCAAGTTTCACCTCCGGGCGTACGCGCTGGCCGGTGG
GAACTTTTTAGTCGTGTATGTGTATACT
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