mRNA_H-paniculata_contig5076.12356.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5076.12356.1 vs. uniprot
Match: A0A6H5K768_9PHAE (FPL domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K768_9PHAE) HSP 1 Score: 496 bits (1277), Expect = 3.220e-151 Identity = 397/914 (43.44%), Postives = 477/914 (52.19%), Query Frame = 1
Query: 1 KVFYLEDVFASGQRELNSQLCESLMGRFVKPLLLGDWLTGRTGAMFPQVALCALTQLFIVVTHPPLIRLLTRETLGYTKTRHMTHRG----------------------DGVSTGEG----TGSARPSLPPLLALLQGEREELCLGALLVLQALVKNELVRTDLGLVQQQEQPQA------PDAEESPTPAAEDPT--AEADTAFALAAA-------------IAGVKGGDPSYIPLEHDILDSAVDALCLLLTPSVALPGSSGSSSPLSSVQGTAAAHVRQGLTTRPAAAGTLSAADVGDDSGGI-GIGGXXVAAEAEEIQYVERHGEGGRAGEXXXXXXXXXXXARAGRSVGRVGDKESLAADAKRXXXXXXXXXXXXXXXXXXXLVLRLCGKVLASLARQANP-----DGSNAEPSTNIPNSEIPNPDEGRGRRKTTQELEMLEGEEFDGDEPALVLPPQLVAAEASVAAAGAEYSSLLRSPSREQSERLPQNGRGSLEGGRMSRAGQQGLTGGVDSLARN---------RHDTVLRRVGEALAVAAEAVVNRMGSAEGPSIVAFEEEVREWLKRVRLDRAITNLPKMSSLILRWSLE--------PNVTPSPPQGSKKPLGEDVQEDGAGGGDGRWMQRELRSSLQAFLEIKHVWRVLAGKGETDPVLSALAGLGPGTEDDQPREGGHLDLGGRDCLACHITSTLPPGFPVGLRDERGAGDKXXXXXXXXXXXSKLRQPVAVRRGRSELYLVLDAKAFLLATPDRLRLRKGEVKSAAPLLHLASAPDPQDPKRLHIRALSHRPVALMQPVT-PXXXXXXXXXXXSKTGKGKGGKRSIAG--GGRVGAEEGGQGGGDAGAICDMQAWSCELAFENEKSCRLARKHMEGRRLLLRSEKMQGIIRVLEGCING 2523
+VFYLEDVFASGQRELN++LCESL+GR V+P+LLGDWL+GR+GAMFPQVALCAL QLFIVVTHPPL+RLL ETLG T+ + G D + G GS PPLLALLQG+REELCLGAL+VLQAL +N++VRTDLGL Q A PDA T AA+ A+ AA D S PL ++LD+AVDALC +L PS A G A + G+++ G+ +G A +E GEGG + GR +E+ ++ LVLRLCGKVLASLA P G++ +P+T P+ G+ P L P A+ + AAAG +P N +G G GG R R D +LRR+G+A A AA AV+ MG+AEG +IVAFEEE+REWLKRV LD AITNLPKMSSLILRWSL+ P P PP S P + E A G GR QRELRSSLQAFLE++ V R+L+G+GE DP + ++AGLGP + P E G LDLGGR+CLAC + L G XXXXXXXXXXX + RRGRSE+YLVLD KAFLLATPDR RL GE+KS+APLLHLA+A DP D KRL IRALSH PVALM+PV P XXXXXX ++A G GA GGGDAG++CDMQAW+CELAFENE+SCRLARKHME RRL LRSEK + I +LE C+ G
Sbjct: 659 QVFYLEDVFASGQRELNAELCESLLGRLVRPMLLGDWLSGRSGAMFPQVALCALAQLFIVVTHPPLVRLLVLETLGSEATQELRPVGAVAXXXXXXXXXXXXXXXTAEVDNIGAAAGGEERAGSGVGRAPPLLALLQGDREELCLGALVVLQALAQNQVVRTDLGLTQDTAYNSAQYHEGLPDAAAGGTGAADGQPNGGYAEEGGQQTAAPXXXXXXXXXXXXXXXXAAADLSARPLGMEMLDAAVDALCCMLAPSTATQAVRGE-----------------------------GAGESGEETAGVVAVGTAAGAKXXXXXXALESGGEGG-------------VHPKGGR-------EEAAGSERGHESTVPVPPTPFLPRPRRHHLVLRLCGKVLASLAPPLPPAPLSSGGADGDPATATPSPR--------------------------GEMPPLPEPRTPSASGDTEAAAGTAAG-------------MPVN------------SGADGGEGGSAVARRKXXXXXXXXGRRDAMLRRIGDAHAAAAAAVLRGMGAAEGAAIVAFEEEIREWLKRVGLDGAITNLPKMSSLILRWSLDNSPPSQRVPAAPPRPPPSS--PTSQGCAE--ADAGSGRARQRELRSSLQAFLEVRQVLRLLSGRGEADPSVLSIAGLGPQAA-EHPWEDGSLDLGGRECLACSFSEPLEGGSXXXXXXXXXXXXXXXXXXXXXXXXXX-----SGRRGRSEMYLVLDDKAFLLATPDRNRLMNGEIKSSAPLLHLAAAVDPADDKRLLIRALSHSPVALMRPVAAPRASTPXXXXXXXXXXXXXXSSSNVATTEGAVSGASVESSGGGDAGSMCDMQAWACELAFENERSCRLARKHMEDRRLWLRSEKTKCITDLLEACVQG 1462
BLAST of mRNA_H-paniculata_contig5076.12356.1 vs. uniprot
Match: D7FXA7_ECTSI (FPL domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA7_ECTSI) HSP 1 Score: 412 bits (1059), Expect = 8.420e-124 Identity = 348/873 (39.86%), Postives = 421/873 (48.22%), Query Frame = 1
Query: 1 KVFYLEDVFASGQRELNSQLCESLMGRFVKPLLLGDWLTGRTGAMFPQVALCALTQLFIVVTHPPLIRLLTRETLGYTKTRHMTHRGDGVSTGEGTGSARPSLPPLLALLQGEREELCLGALLVLQALVKNELVRTDLGLVQQQEQPQAPDAEESPTPAAEDPTAE--------ADTAFALAAAIAGVKGG--------------DPSYIPLEHDILDSAVDALCLLLTPSVALPGSSGSSSPLSSVQGTAAAHVRQGLTTRPAAAGTLSAADVGDDSGGIGIGGXXVAAEAEEIQYVERHGEGGRAGEXXXXXXXXXXXARAGRSVGRVGDKESLAADAKRXXXXXXXXXXXXXXXXXXXLVLRLCGKVLASLA-----RQANPDGSNAEPSTNIPNSEIPNPDEGRGRRKTTQELEMLEGEEFDGDEPALVLPPQLVAAEASVAAAGAEYSSLLRSPSREQSERLPQNGRGSLEGGRMSRAGQQGLTGGVDSLARNRHDTVLRRVGEALAVAAEAVVNRMGSAEGPSIVAFEEEVREWLKRVRLDRAITNLPKMSSLILRWSLEPNV----TPSPPQGSKKPLGEDVQEDGAGGGDGRWMQRELRSSLQAFLEIKHVWRVLAGKGETDPVLSALAGLGPGTEDDQPREGGHLDLGGRDCLACHITSTLPPGFPVGLRDERGAGDKXXXXXXXXXXXSKLRQPVAVRRGRSELYLVLDAKAFLLATPDRLRLRKGEVKSAAPLLHLASAPDPQDPKRLHIRALSHRPVALMQPVTPXXXXXXXXXXXSKTGKGKGGKRSIAGGGRVGAEEGGQGGG-DAGAICDMQAWSCELAFENEKSCRLARKHMEGRRLLLRSEKMQGIIRVLEGCING 2523
+VFYLEDVFASGQRELN++LCESL+GR V+P+LLGDWL+GR+GAMFPQVALCAL QLFIVVTHPPL+RLL ETLG +AL +N++VRTDLGL Q + A D E P AA A A+ AA G DPS PL ++LD+AVDALC +L PS A G + S + TT A GT + G S +G GG H EGGR KE+ ++ LVLRLCGKVLASLA G++ +P+T P+ G+ P + P A+ + AAG +P N S G + D +L+R+GEA A AA AV+ MG+AEG + R + KR RLD AITNLPKMSSLILRWSL+ + P+PP A GG+GR QRELRSSLQAFLE++ V R+L+G+GE DP + ++AGLGP E + P E G LDLGGR+CLAC I+ +L G R XXXXXXXXXXX + RRGRSE+YLVLD KAFLLATPDR RL GE+KS+APLLHLA+A DP D KRL IRALSH PVALM+PV G V DAG++CDMQAW+CEL FENE+SCRLARKHMEGRRL LRSEK + I +LE C+ G
Sbjct: 288 QVFYLEDVFASGQRELNAELCESLLGRLVRPMLLGDWLSGRSGAMFPQVALCALAQLFIVVTHPPLVRLLVLETLGS------------------------------------------------EALAQNQVVRTDLGLTQDAAEDSAQDHEGLPGAAAAGTGAADGQPNGGCAEEEKQQTAAGEGXXXXXXXXXXXXXPAPAVDPSARPLGMEMLDAAVDALCCMLAPSTATQAVGGEGAGESGEE-----------TTGVVAVGTAAGTKEGAPSSALGSGGGAGV-----------HPEGGR--------------------------KEAAGSERGHESTVPVPPTPFLPRPRRHHLVLRLCGKVLASLAPXXXXXXXXXXGADGDPATVTPSPR--------------------------GETPPVPEPGTPSASGGTEDAAGTAAG-------------MPVN---SAADGEEGASAXXXXXXXXXXXXXXXXDAMLKRIGEAHAAAAAAVLRGMGAAEGAA-------PRRFRKR-RLDGAITNLPKMSSLILRWSLDNSPPSQRVPAPPXXXXXXXXXSQGCAEADGGNGRARQRELRSSLQAFLEVRQVLRLLSGRGEADPSVLSIAGLGPQAE-EHPWEDGSLDLGGRECLACSISESLEGGS-----SGRXXXXXXXXXXXXXXXXXXXXXXXSGRRGRSEMYLVLDDKAFLLATPDRNRLMNGEIKSSAPLLHLAAAVDPADDKRLLIRALSHSPVALMRPVAAPRASTPRSSTGXXXXXXXXXXXXXXXXGAVSXXXXXXXXXXDAGSMCDMQAWACELTFENERSCRLARKHMEGRRLRLRSEKTKCITDLLEACVQG 1008 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5076.12356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5076.12356.1 >prot_H-paniculata_contig5076.12356.1 ID=prot_H-paniculata_contig5076.12356.1|Name=mRNA_H-paniculata_contig5076.12356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=823bp MGRFVKPLLLGDWLTGRTGAMFPQVALCALTQLFIVVTHPPLIRLLTRETback to top mRNA from alignment at H-paniculata_contig5076:1115..14014- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5076.12356.1 ID=mRNA_H-paniculata_contig5076.12356.1|Name=mRNA_H-paniculata_contig5076.12356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12900bp|location=Sequence derived from alignment at H-paniculata_contig5076:1115..14014- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5076:1115..14014- >mRNA_H-paniculata_contig5076.12356.1 ID=mRNA_H-paniculata_contig5076.12356.1|Name=mRNA_H-paniculata_contig5076.12356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4938bp|location=Sequence derived from alignment at H-paniculata_contig5076:1115..14014- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |