mRNA_H-paniculata_contig5069.12345.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5069.12345.1
Unique NamemRNA_H-paniculata_contig5069.12345.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5069.12345.1 vs. uniprot
Match: D7FP92_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP92_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 2.130e-97
Identity = 142/148 (95.95%), Postives = 147/148 (99.32%), Query Frame = 1 
Query:    1 MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPAWCDLVKTAPHKEMCPYDQDWYYIRAAAIARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPASTGIIRHVLQQLESLKVVEKMENGGRQVTRVGQQDLDRIAGAVIRGDD 444
            MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELP+WCDLVKTAPHKEMCPYDQDWYYIRAAA+ARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPA+TGIIRHVLQQLE+LKVVEKMENGGR VTRVGQQDLDRIAGAV+RGDD
Sbjct:    1 MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPYDQDWYYIRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPAATGIIRHVLQQLEALKVVEKMENGGRTVTRVGQQDLDRIAGAVVRGDD 148
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BLAST of mRNA_H-paniculata_contig5069.12345.1 vs. uniprot
Match: A0A835ZNM6_9STRA (Ribosomal protein S19e n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNM6_9STRA)

HSP 1 Score: 229 bits (585), Expect = 2.790e-71
Identity = 110/148 (74.32%), Postives = 125/148 (84.46%), Query Frame = 1 
Query:    1 MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPAWCDLVKTAPHKEMCPYDQDWYYIRAAAIARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPASTGIIRHVLQQLESLKVVEKMENGGRQVTRVGQQDLDRIAGAVIRGDD 444
            MA YEP+G++VRDVA A FIKAYA+HLKNTGR ELP W DLVKT   KE+ PYD DWYY+RAAA+ARKVYLRPGRGVGGL+KAFG+  RRGT TN H  AS G+IRH+LQQLE++ VVEK E GGR+VTR GQQDLDRIAGAV RGD+
Sbjct:    1 MATYEPQGVSVRDVAPAKFIKAYADHLKNTGRFELPPWVDLVKTGTQKELAPYDPDWYYVRAAAVARKVYLRPGRGVGGLTKAFGSVERRGTRTNHHARASGGLIRHILQQLETMSVVEKTETGGRKVTREGQQDLDRIAGAVSRGDE 148
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BLAST of mRNA_H-paniculata_contig5069.12345.1 vs. uniprot
Match: A0A8J2WX61_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WX61_9STRA)

HSP 1 Score: 190 bits (483), Expect = 5.850e-56
Identity = 95/146 (65.07%), Postives = 112/146 (76.71%), Query Frame = 1 
Query:    1 MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPAWCDLVKTAPHKEMCPYDQDWYYIRAAAIARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPASTGIIRHVLQQLESLKVVEKMENGGRQVTRVGQQDLDRIAGAVIRG 438
            M +YE RGITVRDVA A FI+AYA HLKN+ R E+P W DLVKT  HKE+ P D DWY++RAA+IARKVYL+PG GVG L K +G + RRG    T + A+ G+IR VLQQLE  KVVEK  +GGR++TRVGQQDLDRIAG V RG
Sbjct:    1 MVEYEARGITVRDVAPAVFIEAYALHLKNSDRFEIPKWTDLVKTGVHKELGPTDDDWYFVRAASIARKVYLKPGVGVGALRKWYGGQYRRGARAKTFQRAAGGLIRSVLQQLEETKVVEKTASGGRRITRVGQQDLDRIAGQVARG 146
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BLAST of mRNA_H-paniculata_contig5069.12345.1 vs. uniprot
Match: A0A8D1BJT9_PIG (Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1BJT9_PIG)

HSP 1 Score: 186 bits (472), Expect = 5.870e-55
Identity = 89/94 (94.68%), Postives = 94/94 (100.00%), Query Frame = 1 
Query:  148 MCPYDQDWYYIRAAAIARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPASTGIIRHVLQQLESLKVVEKMENGGRQVTRVGQQDLDRIAGAV 429
            MCPYDQDWYYIRAAA+ARKVYLRPGRGVGGLSKAFGTKARRGTMTNTH+PASTGIIRHVLQQLESLKVVEKM+NGGRQ++RVGQQDLDRIAGAV
Sbjct:    1 MCPYDQDWYYIRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHRPASTGIIRHVLQQLESLKVVEKMDNGGRQISRVGQQDLDRIAGAV 94
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BLAST of mRNA_H-paniculata_contig5069.12345.1 vs. uniprot
Match: A0A7S1Z1P9_TRICV (Hypothetical protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S1Z1P9_TRICV)

HSP 1 Score: 187 bits (475), Expect = 9.760e-55
Identity = 94/148 (63.51%), Postives = 110/148 (74.32%), Query Frame = 1 
Query:    1 MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPAWCDLVKTAPHKEMCPYDQDWYYIRAAAIARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPASTGIIRHVLQQLESLKVVEKMENGGRQVTRVGQQDLDRIAGAVIRGDD 444
            MA+ E RGI VRDVAA DFI AYAEHLKN+ + ELP W + VKT   KE+ PY  DWYYIRAA+IARKVYLRPG GVG L K +G   RRGT T   + A++GIIR VL QLE +KV E++  GGR++TRVGQQDLDRIAG V R  +
Sbjct:    1 MAEDEARGICVRDVAAKDFIAAYAEHLKNSDKFELPVWAEQVKTGVFKELAPYGDDWYYIRAASIARKVYLRPGLGVGQLQKWYGGSYRRGTRTEHFRKANSGIIRSVLIQLEGMKVTEQLPGGGRRMTRVGQQDLDRIAGTVFRASE 148
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BLAST of mRNA_H-paniculata_contig5069.12345.1 vs. uniprot
Match: A0A5D6XW04_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW04_9STRA)

HSP 1 Score: 187 bits (474), Expect = 1.380e-54
Identity = 94/152 (61.84%), Postives = 115/152 (75.66%), Query Frame = 1 
Query:    1 MADYE--PRGITVRDVAAADFIKAYAEHLKNTGRVELPAWCDLVKTAPHKEMCPYDQDWYYIRAAAIARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPASTGIIRHVLQQLESLKVVEK----MENGGRQVTRVGQQDLDRIAGAVIRG 438
            MA+Y+  PRG+TVRDV AADFIKAYAEHLK +G++ELP+W D+VKTA  KE  P D DWY++RAA+IARKVYLR   GVG L K +G  ARRG      + AS G+IRH+LQQLE +KVV+K    +  GGR++T  GQQDLDRIAG V+RG
Sbjct:    1 MAEYDETPRGVTVRDVKAADFIKAYAEHLKRSGKIELPSWWDIVKTASFKEYSPTDPDWYFVRAASIARKVYLRQYTGVGALKKVYGGAARRGVRHQRFQKASGGLIRHILQQLEEMKVVDKCPEGVNKGGRKITSHGQQDLDRIAGQVVRG 152
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BLAST of mRNA_H-paniculata_contig5069.12345.1 vs. uniprot
Match: K3WSU7_GLOUD (Uncharacterized protein n=2 Tax=Oomycota TaxID=4762 RepID=K3WSU7_GLOUD)

HSP 1 Score: 186 bits (473), Expect = 1.940e-54
Identity = 95/151 (62.91%), Postives = 114/151 (75.50%), Query Frame = 1 
Query:    1 MADYE--PRGITVRDVAAADFIKAYAEHLKNTGRVELPAWCDLVKTAPHKEMCPYDQDWYYIRAAAIARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPASTGIIRHVLQQLESLKVVEK----MENGGRQVTRVGQQDLDRIAGAVIR 435
            MA+YE  PRG+TVRDV AADFIKAYAEHLK +G++ELP+W D+VKTA  KE  P D DWY++RAA+IARKVYLR   GVG L K +G  ARRG      + AS G+IRH+LQQLE +KVVEK    +  GGR++T  GQQDLDRIAG V+R
Sbjct:    1 MAEYEETPRGVTVRDVKAADFIKAYAEHLKRSGKIELPSWWDIVKTASFKEYSPNDPDWYFVRAASIARKVYLRQYTGVGALKKVYGGAARRGVHRQHFQQASGGLIRHILQQLEEMKVVEKCPEGVNKGGRKITSHGQQDLDRIAGQVVR 151
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BLAST of mRNA_H-paniculata_contig5069.12345.1 vs. uniprot
Match: A0A6V0XZ87_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6V0XZ87_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.430e-53
Identity = 91/145 (62.76%), Postives = 109/145 (75.17%), Query Frame = 1 
Query:    1 MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPAWCDLVKTAPHKEMCPYDQDWYYIRAAAIARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPASTGIIRHVLQQLESLKVVEKMENGGRQVTRVGQQDLDRIAGAVIR 435
            MA+ E RGI VRDV A  FI+AYAEHLKN+ + ELP W D VKT   KE+ PY  DWYYIRAA+IAR+VYL PG GVG L + +G   RRG  T   + A+ GIIR VL QLE++KV EK+ENGGR+++RVGQQDLDRIAG+V R
Sbjct:    1 MAEEEQRGICVRDVTAPSFIEAYAEHLKNSDKFELPVWSDTVKTGVFKELAPYGDDWYYIRAASIARRVYLNPGVGVGQLQRWYGGNYRRGCRTEHFRKANKGIIRSVLLQLENMKVTEKLENGGRRISRVGQQDLDRIAGSVFR 145
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BLAST of mRNA_H-paniculata_contig5069.12345.1 vs. uniprot
Match: A0A7S3L966_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L966_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.520e-53
Identity = 90/141 (63.83%), Postives = 109/141 (77.30%), Query Frame = 1 
Query:   13 EPRGITVRDVAAADFIKAYAEHLKNTGRVELPAWCDLVKTAPHKEMCPYDQDWYYIRAAAIARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPASTGIIRHVLQQLESLKVVEKMENGGRQVTRVGQQDLDRIAGAVIR 435
            E RGI VRDV+A  FIKAYAEHLKN+ + +LP W D +KT+   E+ PY  DWYYIRAA+IARKVYLRPG G+G L K +G   RRG  T   + A++G+IR VL QLE +KVVEK+E+GGR+VT VGQQDLDRIAG+VIR
Sbjct:    4 EARGICVRDVSAVSFIKAYAEHLKNSDKFDLPVWADTIKTSVVNELAPYGDDWYYIRAASIARKVYLRPGIGIGQLQKWYGGAYRRGARTEHFRKAASGVIRSVLLQLEEMKVVEKLESGGRRVTTVGQQDLDRIAGSVIR 144
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BLAST of mRNA_H-paniculata_contig5069.12345.1 vs. uniprot
Match: A0A6T7I291_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7I291_9STRA)

HSP 1 Score: 184 bits (466), Expect = 2.150e-53
Identity = 91/144 (63.19%), Postives = 110/144 (76.39%), Query Frame = 1 
Query:   13 EPRGITVRDVAAADFIKAYAEHLKNTGRVELPAWCDLVKTAPHKEMCPYDQDWYYIRAAAIARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPASTGIIRHVLQQLESLKVVEKMENGGRQVTRVGQQDLDRIAGAVIRGDD 444
            E RGI VRDVAA DFI AYAEHLKN+ + ELP W DLVKT   KE+ PY +DWYY RAA+IARKVYLRPG GVG L K +G   RRG  T   + A++GIIR V+ QLE++KV+E + +GGR++TRVGQQDLDRIAGAV   ++
Sbjct:    8 EVRGICVRDVAADDFIAAYAEHLKNSDKFELPVWADLVKTGVFKELAPYGEDWYYTRAASIARKVYLRPGVGVGMLQKWYGGNYRRGARTEHFRKANSGIIRSVMIQLENMKVIENLPSGGRRMTRVGQQDLDRIAGAVFHDNE 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5069.12345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP92_ECTSI2.130e-9795.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZNM6_9STRA2.790e-7174.32Ribosomal protein S19e n=1 Tax=Tribonema minus Tax... [more]
A0A8J2WX61_9STRA5.850e-5665.07Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8D1BJT9_PIG5.870e-5594.68Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9... [more]
A0A7S1Z1P9_TRICV9.760e-5563.51Hypothetical protein n=2 Tax=Eupodiscales TaxID=33... [more]
A0A5D6XW04_9STRA1.380e-5461.84Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WSU7_GLOUD1.940e-5462.91Uncharacterized protein n=2 Tax=Oomycota TaxID=476... [more]
A0A6V0XZ87_9STRA1.430e-5362.76Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S3L966_9STRA1.520e-5363.83Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A6T7I291_9STRA2.150e-5363.19Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5069contigH-paniculata_contig5069:42..5379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.7
Seed ortholog evalue2.9e-78
Seed eggNOG ortholog2880.D7FP92
Preferred nameRPS19
KEGG koko:K02966
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000184,GO:0000462,GO:0000956,GO:0001906,GO:0002181,GO:0002262,GO:0002376,GO:0002520,GO:0002548,GO:0002682,GO:0002683,GO:0002684,GO:0002697,GO:0002698,GO:0002699,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006996,GO:0006997,GO:0007000,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016477,GO:0017134,GO:0019222,GO:0019439,GO:0019538,GO:0019730,GO:0019838,GO:0019899,GO:0019900,GO:0019901,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023052,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030312,GO:0030490,GO:0030595,GO:0031347,GO:0031348,GO:0031349,GO:0031369,GO:0031503,GO:0031640,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032103,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033036,GO:0033365,GO:0034101,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035821,GO:0040011,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042330,GO:0042592,GO:0042742,GO:0042788,GO:0042802,GO:0042803,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044364,GO:0044391,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045088,GO:0045089,GO:0045184,GO:0045595,GO:0045824,GO:0046483,GO:0046700,GO:0046907,GO:0046983,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048534,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0048872,GO:0050657,GO:0050658,GO:0050727,GO:0050728,GO:0050729,GO:0050776,GO:0050777,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050829,GO:0050896,GO:0050900,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051240,GO:0051241,GO:0051259,GO:0051262,GO:0051270,GO:0051272,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0055044,GO:0060255,GO:0060263,GO:0060264,GO:0060265,GO:0060266,GO:0060267,GO:0060268,GO:0060284,GO:0060326,GO:0061844,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071166,GO:0071426,GO:0071428,GO:0071674,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0080134,GO:0090150,GO:0090304,GO:0097064,GO:0097159,GO:0097529,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal small subunit assembly
EggNOG OGsCOG2238@1,KOG3411@2759
Ec32 ortholog descriptionRibosomal protein S19e
Ec32 orthologEc-08_000310.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons3
Model size1237
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5069.12345.1prot_H-paniculata_contig5069.12345.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5069 832..5379 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930488.581066-UTR-H-paniculata_contig5069:41..8311622930488.581066-UTR-H-paniculata_contig5069:41..831Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5069 42..831 -
1691481314.862933-UTR-H-paniculata_contig5069:41..8311691481314.862933-UTR-H-paniculata_contig5069:41..831Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5069 42..831 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930488.594184-CDS-H-paniculata_contig5069:831..9301622930488.594184-CDS-H-paniculata_contig5069:831..930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5069 832..930 -
1691481314.8764434-CDS-H-paniculata_contig5069:831..9301691481314.8764434-CDS-H-paniculata_contig5069:831..930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5069 832..930 -
1622930488.614727-CDS-H-paniculata_contig5069:4004..41651622930488.614727-CDS-H-paniculata_contig5069:4004..4165Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5069 4005..4165 -
1691481314.8842618-CDS-H-paniculata_contig5069:4004..41651691481314.8842618-CDS-H-paniculata_contig5069:4004..4165Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5069 4005..4165 -
1622930488.632583-CDS-H-paniculata_contig5069:5192..53791622930488.632583-CDS-H-paniculata_contig5069:5192..5379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5069 5193..5379 -
1691481314.8921607-CDS-H-paniculata_contig5069:5192..53791691481314.8921607-CDS-H-paniculata_contig5069:5192..5379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5069 5193..5379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5069.12345.1

>prot_H-paniculata_contig5069.12345.1 ID=prot_H-paniculata_contig5069.12345.1|Name=mRNA_H-paniculata_contig5069.12345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPAWCDLVKTAPHKEM
CPYDQDWYYIRAAAIARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPA
STGIIRHVLQQLESLKVVEKMENGGRQVTRVGQQDLDRIAGAVIRGDD*
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mRNA from alignment at H-paniculata_contig5069:42..5379-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5069.12345.1 ID=mRNA_H-paniculata_contig5069.12345.1|Name=mRNA_H-paniculata_contig5069.12345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5338bp|location=Sequence derived from alignment at H-paniculata_contig5069:42..5379- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGACTACGAGCCCCGAGGCATCACCGTGCGCGATGTTGCCGCGGC
TGACTTTATCAAGGCCTACGCTGAGCACCTGAAAAACACTGGGCGTGTGG
AGCTGCCGGCTTGGTGCGACCTGGTGAAGACTGCCCCGCACAAAGAGATG
TGCCCGTACGACCAGGACTGGTACTACATCCGTGCAGGTACGTACGTTGA
TTGGGTGTGACGTGGTTTAATCTCGCGGGATAGGGGCGAAATGTGCTAGA
GAACTGGGTGGGCAAAAAGTTGTCGTTGATGGAGCAACCGACATGATGGT
AGCAACGTAGTTCTCAACATGAGTTACACCTGATTACTGTATAAAACAAA
GGACATACAGGGTTCGACAATTTTTTTGGTTCCAGTGTTTGAATTGTTGT
ACAGTAAGATCACGTTGTGTAACACCCCCCTCTTGTTCGTATAGAGTTAC
CCTTTGTGTGCTTAGACCATGATGCAAGGAAAAGAAATCGACCACTTGAC
CGTAACCTTTTCGGTCAATAATTTCCATGACATCACTACGGTGACGTATG
ATCGCCTCAACTACTTTTCTCAAAGTACACATAACCAATTAAGAAGTGAC
GGCGTCTGCTGACGGTTAGAGGAACGGTGTCCGTTTTTAATCATGAGTCT
TGACCAAGTTTTGGGCTCACAACCTTGGTCGTCGCATTAACAGGGAGCGA
TGGGTTCATGCACTTGAACTAATCGCCTTCGTGAACTTGGATGTTATGAT
GCCGTGAAAATCACCGACACTTACATATTATATTTAACGAAACTTTGGGC
TACCGTATTGTTTCCCACAGCGCCTCTCTTGATGTAGATGAGAAGAGACT
GCACGAACTGGTTCTTGATAGCCGTGTATCCTGTACGTTCCCTTTTCACC
GACGAGTAACGACTTGCTATCGGTGGACTTTTTTTTGTACGCACTCGGAC
ACAAACTTGGAAACCCTCGTTGAAACACGGACGTAATCGTCCATGTACAG
ATTTATTCGATTGACAATCGATAGCCCCTGGATAACGCGACTATTGTAAA
CCCAATGAGTTTTAAACATGAGCTGCTGTGGCTAGATGCCATGGGGGACA
TGGAGCCGGCAGCTGTTACATGGTCAAAACTGATGAAATCAATGAAAGGT
TCCGACGAAAAGAGTCGTCTTTGAATTGGTCGTTTTCGTATTCTGCGGCA
TTCACGTTAACCAGCGGCGATCGCCAGAAAGGTATACCTTCGTCCTGGCC
GCGGTGTTGGTGGTTTGAGCAAGGCGTTCGGCACGAAGGCGAGGAGGGGT
ACCATGACCAACACACACAAACCTGCGTCGACGGGAATTATCCGGCATGT
TCTCCAGCAGCTTGAATCGCTGAAGGTAATGTTGTAAGAAGACCTTCGAA
GTAGAAATGAGTTGTAGGATGTGGCTTGTATCATTGCCCGATCGTCACGA
GCTTTGCGTTGTGCCATTTATGTCCGTGCTGTCGTTCAATCCATTGAGCT
TCGGTCGTATTTTATCCGTCTCTATTGCACTTGTCGTAAGGACGAAATAG
AGGTATACTCACAGGAGCCATATAGATTTCCCTTTCCGAGGAATATAGGG
TAGATGGTAAAGTTTCTGGCAATTACGTGTGCAGGCGGTTCAGTGGAGGG
TGCGGTGATGACGTTCTTTATTTATGATTATCAAGGATTAAGAAATAAGA
ACCTCCTACTCATTCTGAGCGCCCTGAACCATTCACTCATTACGCCACAT
ACGTTTTTGAGGTCAATCACCCGTGGTGCTTGCCTTCGGTTTGTCTGTTC
TCACACAAAGAAATGCACTTTAGTATGAAAAAGTTATTCGCTGTCTTGAA
ATTGCGTCTAGCGCAATAATCAATAATTTCGGAAATTGGACCAGTACTGG
GTGCTGTCCGAATTGTGTGTCGTAACTAGCTCTTGTCTTGGATTCTTCAT
GGCTGTACTCGTATGACACGAAGGATCTCACTTGGAACGTGCTATGATGG
AGTTTTATCAGTATGACAAAAGAGATTATAAGAAAAGAACCTCCTACTCA
TTCTGAGCGCGCTTACAGTCAGTTCGATCGTTTCATGAAAACGTTTCCCG
TGAAAAATAACACGATTACTGTTCGGAATTGAGGTATTCCGCCACGTCGG
TATCAACAGCATGATACGATCAACCGTCCAGTTCTTTGCTTTTTGTGCAA
TCAGTGCTTCCAATTCCTCATCTCTCTGCAGGGTTCTGTGTACCAAATCA
GTGTAGAAACATTGTTCTGACTCCCAGTGGACAGCTGAACCAAATGTCCC
TAAACTAGGGCCTTTTTCTGAATTTTTAATGAAGTGCGACAAGCCTTGGT
GTACCAGCTTCTTTACAATGCGCTTGTGGGTCGCCCACCTCAAATCTAAA
TCACTGAAAAAAGATTGGATGGTCTCCTCACTGAAGATAATGTCCTCAAT
CAGAAATACCAAAAGCTGTTGATCTTGGACTGGGGTTATTGGATGCGCAA
GATAATGCTGTACAGCAGGCTTGTTTTTTACAAACTGATTGTACCAGTTT
TCTACCAGAGGCATGTAGCCTCCCCAGCCAGCACCTTCTTTTTGTACTAG
TTTGGCCAAGACACCACCATCTTGCAGGCGCTGCAGCACATGACTGTGGG
AGAGACACACTGACACAATCATGGCGTACTGCTGACTTAGTTTGGGTCTT
TCAGTTTGTTTTTTGGCGATGTACGCCCATTCAACAAGCAATTGCCAGAT
GCGTACACAGGCTTGGTTTATTTTAACTACTGCTTCTGTCAAGCCCATCT
CAAGCCTACGCATGTCTTTGGCCAATTCATTTTCATAGCTAGCAAAGATA
CGCTGAGGAAGAAATGGCGGCTTGTTCACGCTTATGTTCGTCGAATTTAC
ATGATTGCCCTTTCTGACAGAATTCATGGGTTTAGTGTAGTATCGTTATT
TGCCATCCGGGAATCGTGCACTCGAAGTTGTGAAGTACGGTGCCTATTCG
AATGGACGTGCTATGATGAAGTTCTGTTTGAATGATCCTGCGAGATTATA
AACAAGAACCTCCTACTCATTCTGAGCACATGTTGGAGAAGTGGCTAATG
TCGGTCGGGTTTGTTTCTTTTTGTCGCTGACAGATGCTTCGGTGGAAGTT
TCAAGGTTGGATCTATTACACTGTTTTGTTACAGACATGAGCTTTATACC
TGAAGTACCGTCCACCAAATAGTGTTCTTCTGGATGAACGTGCTGTGATG
AAGTTCTGTGAATGATCCCACAGGATTATAAAACAAGAACCTCCTGCTCA
TTCTGAGCACCTGAAGTGTCTAAGGTCGGTCGGGTTTGGTACTTTTTGTC
GCTGACTGATGCTCTGGTGGAATGTTGAAGGTTTGATCTATTGCTTTGTT
TTGTTACAGAAATGGGCTTTATACCTGAAGTATCGTCCACCAAATAGTGT
TCTTCTGGATGAACGTGCTGTGATGAAGTTCTGTGAATGATCCCACAGGA
TTATAAAATAAGAACCTCCTACTCATTCTGAGCACCTGTTGGAGAAGTGT
CTAAGGTCGGTCGGGTTTGGTGCTTTTTGTCGCTGACAGATGCTTCGGTG
GAATGTCTACGGTTGGCTAAATTGCTCTGTTTTGTCAAAGACATGAGCTT
TATACCTGAAGTATCGTCCACCAAATAGTGTTCTTCTGGATGAACGTGCT
GTGATGAAGTTCTGTGAATGATCCCACAGGATTATAAAATAAGAACCTCC
TACTCACTCTGAGCACTTTTCGAGAGAGCTTGTTGCGCCGCGTCTGATGA
GCTGTCGATACTGCGAACCTTGCTTGCTGTATTCTTTCTGAATTGGGTGT
TTCGTGGTCTTGTCAAATCCTTGGGCTGGGGCTTGAAGAAACTCCTGGAT
ATTCCAAAACTGGAAGACGGGCGTTTCGCTGAGTTGTTTCGGAAATTTGG
CTTGCGGTAGTATTTGTCGATGATTTTATTGAACTTCATGCGTCAATTGC
CCGTATCACTCGTGGGCAGTATGAATCCGTGTCTTACGAGAAGATTGAGG
ATGGCATGCTTGTTGTGTTACTGAAACTGTGTCGGAGTATACGTGGTTCA
GATAGAAACGTTGGGGCCCAAGGTGATCATGGTCACAATAGAGCCGACTA
CATACCTGTACTGGCTTACTGGATGGACTGGAGGATCAGTCATAGTTTCC
AATCTGTATTACGACTGGTTTCTTTCGAAAGTCAGGGAACCGGCTATGAG
TATTTTCATGTTTGCATAATCAAGCGTACTTCTCTCCTGATCCGACCGTT
TCTTACTGTGAAGATTTGACTGAAGTAAACGAATAATTATGGAAACAATC
GACGGAATAATGTCTTCGGGATTCCCCGTGACGAAAGTCATCACTGATGG
AATTTCGCGTCTGTATTTTTCATATGACTACTGGCGTAAATGGACACAGG
TTGTGGAGAAAATGGAGAATGGTGGACGGCAGGTGACGCGCGTTGGTCAG
CAGGACCTTGACCGCATTGCTGGTGCCGTCATCCGCGGAGATGACTAGAC
CCGGTCTGCGTTGCACACTCGTATCGTCACGGAGCAGGACGGGCGGGGTA
GGGGGTGGGGATATACAAGTTCCGCTCGCGTTTTCCCACCGTGACCCTCC
GTCACGAAGATACTAAATTGCCGTTTGCTTCACGTGTTTGTAGTGTACAC
GTTATTCTGCGGGATTTATGGCCTTTTTTCTTCTGCTGCTCCACCAAGGC
CTCTTCAGGGGGCCTGAGTAATAACACTGGCTTGAGACTCGAATGGGGTA
GGATATCATCCTACGTTTGATACACTTGTATTACGAAAGTACGCAAAAAT
TCTCCACAGTATACTCGTTTCTCAGAGAAAAGAAAAAATGGTGCGACAGT
ATTCATCCTCCCCCATCATCGGCAGGATGGTTGTCTGATCTCGCGTCGTG
TCGTGAATCGTGCTCCTGCGCCGATGCACGATCTAGAGCACGTCGTGTAA
TGTAACACCGACCGTTTACGCGACCCGACTTGAAACGCTGATACTTTTTT
GAATAACGGCAGTTCAAGACCTCGATTGGTGTCCGAGCATATTTGTCGCC
AGATGATAGCTTCCTTCAAAACTCAACAAGGACCACCATCGGAGCGGTCG
AAAGTTTATCAGTATAGATGGTGACACCACTTTCGTCGGTTCTACTTAAC
GAACTAAATTGATGATGCGATAGGAATTTTCTTTTGTCCGAAGAGGAGAT
TTTTTCATTTGCTTTTCATGGCCTCGTTTTGCTCCATAAAAAAACAAGGA
CAGTTTTTTTTTTTTTTTTAACCCCCGCAAGGTCAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig5069:42..5379-

>mRNA_H-paniculata_contig5069.12345.1 ID=mRNA_H-paniculata_contig5069.12345.1|Name=mRNA_H-paniculata_contig5069.12345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig5069:42..5379- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGACTACGAGCCCCGAGGCATCACCGTGCGCGATGTTGCCGCGGC
TGACTTTATCAAGGCCTACGCTGAGCACCTGAAAAACACTGGGCGTGTGG
AGCTGCCGGCTTGGTGCGACCTGGTGAAGACTGCCCCGCACAAAGAGATG
TGCCCGTACGACCAGGACTGGTACTACATCCGTGCAGATGGCCGACTACG
AGCCCCGAGGCATCACCGTGCGCGATGTTGCCGCGGCTGACTTTATCAAG
GCCTACGCTGAGCACCTGAAAAACACTGGGCGTGTGGAGCTGCCGGCTTG
GTGCGACCTGGTGAAGACTGCCCCGCACAAAGAGATGTGCCCGTACGACC
AGGACTGGTACTACATCCGTGCAGCGGCGATCGCCAGAAAGGTATACCTT
CGTCCTGGCCGCGGTGTTGGTGGTTTGAGCAAGGCGTTCGGCACGAAGGC
GAGGAGGGGTACCATGACCAACACACACAAACCTGCGTCGACGGGAATTA
TCCGGCATGTTCTCCAGCAGCTTGAATCGCTGAAGCGGCGATCGCCAGAA
AGGTATACCTTCGTCCTGGCCGCGGTGTTGGTGGTTTGAGCAAGGCGTTC
GGCACGAAGGCGAGGAGGGGTACCATGACCAACACACACAAACCTGCGTC
GACGGGAATTATCCGGCATGTTCTCCAGCAGCTTGAATCGCTGAAGGTTG
TGGAGAAAATGGAGAATGGTGGACGGCAGGTGACGCGCGTTGGTCAGCAG
GACCTTGACCGCATTGCTGGTGCCGTCATCCGCGGAGATGACTAGGTTGT
GGAGAAAATGGAGAATGGTGGACGGCAGGTGACGCGCGTTGGTCAGCAGG
ACCTTGACCGCATTGCTGGTGCCGTCATCCGCGGAGATGACTAG
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