mRNA_H-paniculata_contig50688.12344.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50688.12344.1
Unique NamemRNA_H-paniculata_contig50688.12344.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig50688.12344.1 vs. uniprot
Match: A0A6H5KWX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX9_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.470e-37
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 RTKDIFASVGADGSVRMFDLRSLEHSTIIYETHDLTPLMRLSWNKQDPNYLATILTDSAKTVILDIR 201
            RTKDIFASVGADGSVRMFDLRSLEHSTIIYETHDLTPLMRLSWNKQDPNYLATILTDSAKTVILDIR
Sbjct:  179 RTKDIFASVGADGSVRMFDLRSLEHSTIIYETHDLTPLMRLSWNKQDPNYLATILTDSAKTVILDIR 245
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BLAST of mRNA_H-paniculata_contig50688.12344.1 vs. uniprot
Match: D8LR84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR84_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.010e-35
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 RTKDIFASVGADGSVRMFDLRSLEHSTIIYETHDLTPLMRLSWNKQDPNYLATILTDSAKTVILDI 198
            RTKDIFASVGADGSVRMFDLRSLEHSTIIYETHDLTPLMRLSWNKQDPNYLATILTDSAKTVILDI
Sbjct:  179 RTKDIFASVGADGSVRMFDLRSLEHSTIIYETHDLTPLMRLSWNKQDPNYLATILTDSAKTVILDI 244
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BLAST of mRNA_H-paniculata_contig50688.12344.1 vs. uniprot
Match: A0A7S2FKV7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKV7_9STRA)

HSP 1 Score: 114 bits (286), Expect = 5.190e-31
Identity = 55/65 (84.62%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    7 KDIFASVGADGSVRMFDLRSLEHSTIIYETHDLTPLMRLSWNKQDPNYLATILTDSAKTVILDIR 201
            K+IFASVGADGSVR+FDLRSLEHSTIIYE+ +L PL+RL+WNKQDPNYLATILTDS +TVILDIR
Sbjct:    9 KNIFASVGADGSVRLFDLRSLEHSTIIYESENLHPLLRLAWNKQDPNYLATILTDSPRTVILDIR 73
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BLAST of mRNA_H-paniculata_contig50688.12344.1 vs. uniprot
Match: A0A835ZHY0_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHY0_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.780e-30
Identity = 55/67 (82.09%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:    1 RTKDIFASVGADGSVRMFDLRSLEHSTIIYETHDLTPLMRLSWNKQDPNYLATILTDSAKTVILDIR 201
            R K++FASVGADGSVRMFDLRSLEHSTIIYET DLTPL+RL+WNKQDPNY+ATI+ DS+K V+LDIR
Sbjct:  179 RDKEVFASVGADGSVRMFDLRSLEHSTIIYETPDLTPLLRLAWNKQDPNYVATIMVDSSKGVVLDIR 245
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BLAST of mRNA_H-paniculata_contig50688.12344.1 vs. uniprot
Match: A0A7S2Y0K5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0K5_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.200e-30
Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    7 KDIFASVGADGSVRMFDLRSLEHSTIIYETHDLTPLMRLSWNKQDPNYLATILTDSAKTVILDIR 201
            +D+FASVG DGSVRMFDLRSLEHSTIIYET DLTPL+RL+WNKQDPNYLA ILTDS+ TVI+DIR
Sbjct:  185 RDVFASVGGDGSVRMFDLRSLEHSTIIYETADLTPLLRLAWNKQDPNYLAAILTDSSMTVIVDIR 249
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BLAST of mRNA_H-paniculata_contig50688.12344.1 vs. uniprot
Match: A0A7S2EV01_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EV01_TRICV)

HSP 1 Score: 113 bits (282), Expect = 4.550e-29
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    1 RTKDIFASVGADGSVRMFDLRSLEHSTIIYETHDLTPLMRLSWNKQDPNYLATILTDSAKTVILDIR 201
            R KD+FASVGADGSVRMFDLRSLEHSTIIYE+ +L PL+RL WNKQDPNYLAT + DS +T+ILDIR
Sbjct:  134 RGKDVFASVGADGSVRMFDLRSLEHSTIIYESPNLDPLLRLEWNKQDPNYLATFMVDSRRTIILDIR 200
[Close]
BLAST of mRNA_H-paniculata_contig50688.12344.1 vs. uniprot
Match: A0A4D9DCM3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCM3_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.980e-29
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    1 RTKDIFASVGADGSVRMFDLRSLEHSTIIYETHDLTPLMRLSWNKQDPNYLATILTDSAKTVILDIR 201
            R KD+FASVGADGSVRMFDLRSL HSTIIYE+ DL PL+RL+WN+QDPNYLATI+ DS KT +LDIR
Sbjct:  113 RGKDLFASVGADGSVRMFDLRSLVHSTIIYESPDLVPLLRLAWNRQDPNYLATIMADSTKTYLLDIR 179
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BLAST of mRNA_H-paniculata_contig50688.12344.1 vs. uniprot
Match: A0A6V1NZ18_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NZ18_HETAK)

HSP 1 Score: 113 bits (283), Expect = 8.910e-29
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    4 TKDIFASVGADGSVRMFDLRSLEHSTIIYETHDLTPLMRLSWNKQDPNYLATILTDSAKTVILDIR 201
            +KDIFASVGADGSVR+FDLRSLEHSTIIYET  LTPL+RL+WNKQDPNYL  I+TDS  TV+LD+R
Sbjct:  192 SKDIFASVGADGSVRLFDLRSLEHSTIIYETQGLTPLLRLAWNKQDPNYLGCIMTDSPTTVLLDVR 257
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BLAST of mRNA_H-paniculata_contig50688.12344.1 vs. uniprot
Match: B7G4D5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G4D5_PHATC)

HSP 1 Score: 113 bits (283), Expect = 8.910e-29
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    1 RTKDIFASVGADGSVRMFDLRSLEHSTIIYETHDLTPLMRLSWNKQDPNYLATILTDSAKTVILDIR 201
            R KD+FASVGADGSVRMFDLRSLEHSTIIYE+ +L PL+RL WNKQDPNYLAT + DS +TVILDIR
Sbjct:  190 RGKDVFASVGADGSVRMFDLRSLEHSTIIYESPNLDPLLRLEWNKQDPNYLATFMVDSRRTVILDIR 256
[Close]
BLAST of mRNA_H-paniculata_contig50688.12344.1 vs. uniprot
Match: A0A7S2G9N6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G9N6_9STRA)

HSP 1 Score: 113 bits (282), Expect = 9.560e-29
Identity = 52/65 (80.00%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    7 KDIFASVGADGSVRMFDLRSLEHSTIIYETHDLTPLMRLSWNKQDPNYLATILTDSAKTVILDIR 201
            K++FASVGADGSVR+FDLRSLEHSTIIYE+ +L PL+RL+WNKQDPNY+AT+LTDS +TVILDIR
Sbjct:  177 KNVFASVGADGSVRLFDLRSLEHSTIIYESENLHPLLRLAWNKQDPNYIATVLTDSPRTVILDIR 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50688.12344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWX9_9PHAE1.470e-37100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LR84_ECTSI1.010e-35100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2FKV7_9STRA5.190e-3184.62Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835ZHY0_9STRA1.780e-3082.09WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S2Y0K5_9STRA5.200e-3084.62Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2EV01_TRICV4.550e-2979.10Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A4D9DCM3_9STRA5.980e-2979.10Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6V1NZ18_HETAK8.910e-2980.30Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B7G4D5_PHATC8.910e-2980.60Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2G9N6_9STRA9.560e-2980.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50688contigH-paniculata_contig50688:392..592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue3.3e-29
Seed eggNOG ortholog2880.D8LR84
Preferred nameDCAF7
KEGG koko:K11805
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0001558,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006275,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0007346,GO:0007399,GO:0007517,GO:0008150,GO:0008152,GO:0008361,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010556,GO:0010564,GO:0010646,GO:0010648,GO:0010769,GO:0010975,GO:0016043,GO:0016363,GO:0016604,GO:0017016,GO:0017048,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019904,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023057,GO:0030100,GO:0030154,GO:0030274,GO:0030334,GO:0030336,GO:0030516,GO:0031267,GO:0031323,GO:0031326,GO:0031344,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032879,GO:0032991,GO:0033262,GO:0034399,GO:0035330,GO:0035331,GO:0036211,GO:0040008,GO:0040012,GO:0040013,GO:0042692,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045445,GO:0045595,GO:0045664,GO:0045806,GO:0045927,GO:0048365,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048627,GO:0048638,GO:0048699,GO:0048731,GO:0048747,GO:0048856,GO:0048869,GO:0050764,GO:0050765,GO:0050767,GO:0050770,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051051,GO:0051052,GO:0051128,GO:0051129,GO:0051146,GO:0051171,GO:0051239,GO:0051270,GO:0051271,GO:0051336,GO:0051726,GO:0051960,GO:0055001,GO:0055002,GO:0060099,GO:0060101,GO:0060255,GO:0060284,GO:0060627,GO:0061061,GO:0061387,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090066,GO:0090329,GO:0120035,GO:1901564,GO:1902494,GO:1902531,GO:1902532,GO:1903463,GO:1905153,GO:1905154,GO:1990234,GO:2000026,GO:2000112,GO:2000145,GO:2000146
EggNOG free text desc.epidermal cell fate specification
EggNOG OGsKOG0290@1,KOG0290@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930488.539874-CDS-H-paniculata_contig50688:391..5921622930488.539874-CDS-H-paniculata_contig50688:391..592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50688 392..592 -
1691481314.8470626-CDS-H-paniculata_contig50688:391..5921691481314.8470626-CDS-H-paniculata_contig50688:391..592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50688 392..592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50688.12344.1prot_H-paniculata_contig50688.12344.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50688 392..592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50688.12344.1

>prot_H-paniculata_contig50688.12344.1 ID=prot_H-paniculata_contig50688.12344.1|Name=mRNA_H-paniculata_contig50688.12344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
RTKDIFASVGADGSVRMFDLRSLEHSTIIYETHDLTPLMRLSWNKQDPNY
LATILTDSAKTVILDIR
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mRNA from alignment at H-paniculata_contig50688:392..592-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50688.12344.1 ID=mRNA_H-paniculata_contig50688.12344.1|Name=mRNA_H-paniculata_contig50688.12344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig50688:392..592- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGACGAAGGATATATTTGCTTCAGTAGGAGCGGATGGCAGCGTGCGCAT
GTTCGATCTACGATCACTTGAGCACTCGACAATTATCTACGAGACGCATG
ACCTTACCCCGCTGATGAGGCTCAGCTGGAACAAGCAGGACCCGAACTAT
CTCGCCACGATTCTCACGGACTCCGCTAAGACCGTCATCCTTGATATCAG
G
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Coding sequence (CDS) from alignment at H-paniculata_contig50688:392..592-

>mRNA_H-paniculata_contig50688.12344.1 ID=mRNA_H-paniculata_contig50688.12344.1|Name=mRNA_H-paniculata_contig50688.12344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig50688:392..592- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGACGAAGGATATATTTGCTTCAGTAGGAGCGGATGGCAGCGTGCGCAT
GTTCGATCTACGATCACTTGAGCACTCGACAATTATCTACGAGACGCATG
ACCTTACCCCGCTGATGAGGCTCAGCTGGAACAAGCAGGACCCGAACTAT
CTCGCCACGATTCTCACGGACTCCGCTAAGACCGTCATCCTTGATATCAG
GAGGACGAAGGATATATTTGCTTCAGTAGGAGCGGATGGCAGCGTGCGCA
TGTTCGATCTACGATCACTTGAGCACTCGACAATTATCTACGAGACGCAT
GACCTTACCCCGCTGATGAGGCTCAGCTGGAACAAGCAGGACCCGAACTA
TCTCGCCACGATTCTCACGGACTCCGCTAAGACCGTCATCCTTGATATCA
GG
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