mRNA_H-paniculata_contig5068.12343.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: A0A8J9WSQ3_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WSQ3_9CHLO) HSP 1 Score: 149 bits (375), Expect = 1.750e-38 Identity = 99/270 (36.67%), Postives = 137/270 (50.74%), Query Frame = 1
Query: 1 IPEFYILPKIHKPITVGRPIAAGHSFATTPWSALLCHWLQPVLYNLITVLKDSRTLIRDMESAHFDNRSVWTLVTADVVSLYPSLNVQQVITNTMIATREQYGPNWPSQIYHFLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLAISERRRLEKH--LHIYLFRRYIDDIFCIVKDTERVTYQFLSSLYQEL--DLKLKFDMTQDKIEFLDLIVYKGIRWRIDGRLDLRTHQKKLNLYSYLPYRSAHPIHCKTGFMTGE 798
+P FYI+PK+HK GRPI A + TTP S + L P++ L TVLKD+ LI ++ F + L TADV SLY S+ V + RE+ + ++ + FVL N Y+ FDGK + KGL MGTP AP LANI +A E++ L ++ R++DDIF V+ + Y L + +KL F + ++E LDL++YK L R HQK LN Y Y+ RS HP H GF+ E
Sbjct: 61 VPAFYIMPKLHKEPVKGRPIVASCGWCTTPLSQWCANTLAPIVAQLPTVLKDTADLISRLKDVRFSVDANVLLSTADVESLYTSIPVGDAVEALAQTLREKRVGEKEAAC---IKLAVKFVLMNNYLTFDGKCYKQIKGLAMGTPLAPPLANIFMAHLEKKTFASRPGLCPVMYGRFLDDIF-YVQVLRNIPYHILPKALGNMHPSIKLTFKSSPIELEMLDLVIYKA-----GDHLLHRVHQKALNKYLYISSRSCHPPHVMRGFIRTE 321
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: A0A8J9RII3_9CHLO (Uncharacterized protein n=2 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RII3_9CHLO) HSP 1 Score: 149 bits (375), Expect = 1.170e-37 Identity = 99/270 (36.67%), Postives = 137/270 (50.74%), Query Frame = 1
Query: 1 IPEFYILPKIHKPITVGRPIAAGHSFATTPWSALLCHWLQPVLYNLITVLKDSRTLIRDMESAHFDNRSVWTLVTADVVSLYPSLNVQQVITNTMIATREQYGPNWPSQIYHFLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLAISERRRLEKH--LHIYLFRRYIDDIFCIVKDTERVTYQFLSSLYQEL--DLKLKFDMTQDKIEFLDLIVYKGIRWRIDGRLDLRTHQKKLNLYSYLPYRSAHPIHCKTGFMTGE 798
+P FYI+PK+HK GRPI A + TTP S + L P++ L TVLKD+ LI ++ F + L TADV SLY S+ V + RE+ + ++ + FVL N Y+ FDGK + KGL MGTP AP LANI +A E++ L ++ R++DDIF V+ + Y L + +KL F + ++E LDL++YK L R HQK LN Y Y+ RS HP H GF+ E
Sbjct: 197 VPAFYIMPKLHKEPVKGRPIVASCGWCTTPLSQWCANTLAPIVAQLPTVLKDTADLISRLKDVRFSADANVLLSTADVESLYTSIPVGDAVEALAQTLREKRVGEKEAAC---IKLAVKFVLMNNYLTFDGKCYKQIKGLAMGTPLAPPLANIFMAHLEKKTFASRPGLCPVMYGRFLDDIF-YVQVLRNIPYHVLRKALGNMHPSIKLTFKSSPIELEMLDLVIYKA-----GDHLLHRVHQKALNKYLYISSRSCHPPHVMRGFIRTE 457
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: A0A0L6V163_9BASI (Reverse transcriptase n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6V163_9BASI) HSP 1 Score: 124 bits (312), Expect = 1.300e-28 Identity = 88/272 (32.35%), Postives = 133/272 (48.90%), Query Frame = 1
Query: 1 IPEFYILPKIHKPITVGRPIAAGHSFATTPWSALLCHWLQPVLYNLITVLKDSRTLIRDMESAHFD-NRSVWTLVTADVVSLYPSL-NVQQVITNTMIATREQYGPNWPSQIYHFLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLAISERRRLE-KHLHIYLFRRYIDDIFCIVKDTE---RVTYQFLSSLYQELDLKLKFDMTQDKIEFLDLIVYKGIRWRIDGRLDLRTHQKKLNLYSYLPYRSAHPIHCKTGFMTGE 798
IPEFYILPK+HK GRPI ++ TT S L + L+P L +L+DS+ L++ + + + S+W L+TADV S Y SL N +AT+ Y L L FVL N ++ F ++ G MGT AP+ AN+ A E ++ K + + R++DDI IVK + + +F+ DL+L + ++Q + FLD+ + R+ +QK N Y Y+P+ S HP K F+ GE
Sbjct: 172 IPEFYILPKVHKNPIKGRPIVPSFNWITTNLSKWLDYTLRPFLQEFPWILRDSKQLLQQLPALSLSKDDSIW-LLTADVTSFYSSLPNETGCKIIRWLATKNDYSDTDADT----LSEALGFVLNNNFLSFGSAVYRQVFGTAMGTACAPVYANLFAAAYESLTMDNKPTSLVYYGRFLDDILVIVKGSNTDVEIVKRFVDDSLG--DLELSWTVSQTSLAFLDINLQVNATDCSAPRITTSVYQKPSNAYQYIPWSSYHPPKVKLAFVKGE 436
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: A0A0L6UKT0_9BASI (Reverse transcriptase (Fragment) n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6UKT0_9BASI) HSP 1 Score: 119 bits (298), Expect = 1.030e-26 Identity = 91/287 (31.71%), Postives = 138/287 (48.08%), Query Frame = 1
Query: 1 IPEFYILPKIHKPITVGRPIAAGHSFATTPWSALLCHWLQPVLYNLITVLKDSRTLIRDMESAHFDNRS--VWTLVTADVVSLYPSLNVQQVITNTMIATREQYGPNWPSQIYH-------FLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLAISERRRLEKHLHIYLFR-RYIDDIFCIVK----DTERVTYQFLSSLYQELDLKLKFDMTQDKIEFLDLIVYKGIRWRIDGRLD-------LRTHQKKLNLYSYLPYRSAHPIHCKTGFMTGE 798
+PEFY+LPK+HK GRPI H + TT S L + L+P L + +L+DS+TL+R +++ S +W L+TAD+ S Y S+ + I W + I+ L + L F+LKN Y+ F ++ G MGT AP AN+ A E L+K L+ RY+DDI IVK + E V F++ Q ++L + ++ + FLD+ + ++D D +QK N Y Y+P+ S HP K F+ GE
Sbjct: 926 LPEFYVLPKVHKQPIRGRPIVPSHKWITTNLSKWLDYQLRPFLSSYPWILRDSKTLLRHLDTLALPTSSEKIW-LLTADMTSFYSSIPTDEGIKII----------RWMASIHKRSDDDADVLGQSLEFILKNNYLAFGSSVYRQVNGTAMGTACAPAFANLYAAAYESLTLDKKPPSLLYYGRYLDDILVIVKGSIANVEHVK-TFVNHTLQTMELS--WTVSPTSLPFLDITL------QVDEDPDSLKRSIVTSVYQKPSNAYQYIPWSSYHPPKVKLAFVKGE 1192
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: A0A162HZF7_9EURO (Reverse transcriptase n=1 Tax=Ascosphaera apis ARSEF 7405 TaxID=392613 RepID=A0A162HZF7_9EURO) HSP 1 Score: 115 bits (288), Expect = 2.070e-25 Identity = 87/280 (31.07%), Postives = 137/280 (48.93%), Query Frame = 1
Query: 1 IPEFYILPKIHKPITVGRPIAAGHSFATTPWSALLCHWLQPVLYNLITVLKDSRTLIRDMESAHFDNRS----VWTLVTADVVSLYPSL-------NVQQVITNTMIATREQYGPNWPSQIYHFLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLA-ISERRRLEKHLHIYLFRRYIDDIFCIVKDTERVTYQFLSSLYQELDLKLKFDMTQDKIEFLDLIV--YKGIRWRIDGRLDLRTHQKKLNLYSYLPYRSAHPIHCKTGFMTGE 798
+P + +PK+HK RPI HS+ TT S ++ +P+L VL S+ I +E S VW LV+ DV + Y ++ +V + IA EQ P+ PS + ++ +V+ + FDG ++ +GL MGTP+AP+LAN+ A I E+ + KH + + RY+DDIF + K +E FL+ + L + + +Q FLD+ V YK + L + K +N + Y+P+ SAHP H K F+ E
Sbjct: 604 LPRLHGIPKVHKEPWKMRPIVPSHSWITTCVSQVVDFLCRPLLAKYPWVLISSKDFIVQLEKVRSKPSSATDDVW-LVSGDVEAFYTNIPPSDCAFSVAEAYGKWNIAA-EQGRPHPPSP--EIIASMIGYVMDKNFFAFDGTIYKQTRGLAMGTPAAPVLANVYAASIEEQLPILKHARLLYYGRYLDDIFLMYKGSEEELKSFLAQVKLG-SLTISWSYSQTTEHFLDVEVLRYKNTSMEV-WTLATKLFVKPMNRHLYIPWSSAHPQHVKKAFVKAE 877
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: UPI00109BD10C (uncharacterized protein LOC110237361 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BD10C) HSP 1 Score: 110 bits (274), Expect = 1.980e-24 Identity = 73/196 (37.24%), Postives = 103/196 (52.55%), Query Frame = 1
Query: 217 LVTADVVSLYPSLNVQQVITNTMIATREQYGPNWPSQIYHFLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLAISERRRLEKHL-HIYLFRRYIDDIFCIVKDTERVTYQFLSSLYQELD-LKLKFDMTQDKIEFLDLIVYKGIRWRIDGRLDLRTHQKKLNLYSYLPYRSAHPIHCKTGFMTGE 798
LVTADV+SLYP++++++ + + RE P P I N VLK +F ++F G+ MGTP A AN + E+ + + H+ L++R+IDDIFCI K FLS L D +KL + ++KI FLDL++YK RL T QK LN Y Y+P+ S HP K F+ GE
Sbjct: 76 LVTADVISLYPNVDIKKALIALDLLLREAKAPETPLLIQFARLVFENNVLKT---EFSEEIFHQIYGIAMGTPFAVTAANAFMYYLEKDLVSQFSNHLVLYKRFIDDIFCIWKGPRDKLLDFLSCLNSRNDRIKLTHVIEENKISFLDLLLYKDSN---SNRLHFSTFQKPLNKYLYIPFESFHPGSNKKAFIRGE 265
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: UPI00109BA0B3 (uncharacterized protein LOC114576718 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BA0B3) HSP 1 Score: 112 bits (279), Expect = 2.890e-24 Identity = 72/183 (39.34%), Postives = 105/183 (57.38%), Query Frame = 1
Query: 7 EFYILPKIHKPITVGRPIAAGHSFATTPWSALLCHWLQPVLYNLITVLKDSRTLIRDMESAHFDNRSVWTLVTADVVSLYPSLNVQQVITNTMIATREQYGPNWPSQIYHFLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLAISERRRLEKHL-HIYLFRRYIDDIFCIVK 552
+FYI+PKIHK VGRPIAA HS+ T P S + ++P L + TVL+DS LI+ +ES ++ LVTADV+SLYP++++++ + + RE P P I N VLK +F ++F G+ MGTP A AN + E+ + + H+ L++R+IDDIFCI K
Sbjct: 220 KFYIIPKIHKNPMVGRPIAASHSYITRPLSIFVDEXVKPRL-KMPTVLRDSGELIQALESIRLPSQCF--LVTADVISLYPNVDIKKALIALDLLLREAKAPETPLLIQFARLVFENNVLKT---EFSEEIFHQIYGIAMGTPFAVTAANAFMYYLEKDLVSQFSNHLVLYKRFIDDIFCIWK 396
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: A0A0L6VM36_9BASI (Reverse transcriptase (Fragment) n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6VM36_9BASI) HSP 1 Score: 110 bits (275), Expect = 1.060e-23 Identity = 87/280 (31.07%), Postives = 127/280 (45.36%), Query Frame = 1
Query: 1 IPEFYILPKIHKPITVGRPIAAGHSFATTPWSALLCHWLQPVLYNLITVLKDSRTLIRDMESAHFDNRS--VWTLVTADVVSLYPSLNVQQVITNTMIATREQYGPNWPSQIYH-------FLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLAISERRRLEKH-LHIYLFRRYIDDIFCIVK----DTERVTYQFLSSLYQELDLKLKFDMTQDKIEFLDLIVYKGIRWRIDGRLDLRTHQKKLNLYSYLPYRSAHPIHCKTGFMTGE 798
+PEFY+LPK+HK GRPI H + TT S L L+P L + +L+DS+ L+R +E+ S +W L+TAD+ S Y S+ + I W + I+ L + L F+LKN Y+ F ++ G MGT AP AN+ A E L+K + + RY+DDI IVK D E V F++ + ++L D K + + +QK N Y Y+P+ S HP K F+ GE
Sbjct: 365 LPEFYVLPKVHKLPIRGRPIVPSHKWITTNLSKWLDTQLRPFLSSYPWILRDSKALLRHLETLALPTSSDKIW-LLTADMTSFYSSIPTDEGIKIV----------RWMASIHKRSDDDADVLGQSLEFILKNNYLAFGSSVYRQVNGTAMGTACAPAFANLYAAAYESLTLDKKPASLLYYGRYLDDILVIVKGSISDVEHVK-TFVNHTLRTMELSWT-DPNSLKRSIVTSV-----------------YQKPSNAYQYIPWSSYHPPKVKLAFVKGE 614
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: A0A8C5P9M3_9ANUR (Uncharacterized protein n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5P9M3_9ANUR) HSP 1 Score: 108 bits (269), Expect = 1.470e-23 Identity = 87/265 (32.83%), Postives = 135/265 (50.94%), Query Frame = 1
Query: 4 PEFYILPKIHKPIT--VGRPIAAGHSFATTPWSALLCHWLQPVLYNLITVLKDSRTLIRDMESAHFDNRSVWTLVTADVVSLY---PSLNVQQVITNTMIAT-REQYGPNWPSQIYHFLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLAISERR-----RLEKHLHIYLFRRYIDDIFCIVKDTERVTYQFLSSLYQ-ELDLKLKFDMTQDKIEFLDLIVYKGIRWRIDGRLDLRTHQKKLNLYSYLPYRSAH 762
P YILPKIHK T GRPI AG T+ S + +LQP++ + + LKD+ +++ + + +N + LVT DV +LY P L V+ N + T R Y QI F+ + +NF+LKN Y +F+ + ++ KG MGT P AN+ +A E + R ++ +RRYIDD+F I + E FL+ L E +KL + D + FLDL +Y R +L +T K+++ +++ S H
Sbjct: 118 PHIYILPKIHKHPTNPPGRPIVAGIDSITSHLSEYVDLFLQPIVREIPSHLKDTLDMLKLINNLKLENNDI--LVTCDVNALYSNIPHLMGANVVHNEISKTNRMNYD-----QI-SFILKSINFILKNNYFKFEEEFYIQRKGTAMGTKFLPSYANLYMAGWESQFVYGSRSWALGNVLSYRRYIDDVFFIWRGLEDDLRSFLTGLDSPEWGIKLDSKWSNDSVTFLDLNIY-----REGNKLKSKTFFKEVDTNTFIEKNSCH 369
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Match: A0A8J1LWW7_XENLA (uncharacterized protein LOC121398283 n=1 Tax=Xenopus laevis TaxID=8355 RepID=A0A8J1LWW7_XENLA) HSP 1 Score: 106 bits (265), Expect = 2.040e-22 Identity = 81/274 (29.56%), Postives = 132/274 (48.18%), Query Frame = 1
Query: 4 PEFYILPKIHKPIT--VGRPIAAGHSFATTPWSALLCHWLQPVLYNLITVLKDSRTLIRDMESAHFDNRSVWTLVTADVVSLYPSLNVQ---QVITNTMIATREQYGPNWPSQIYHFLERILNFVLKNGYVQFDGKLFL*HKGLVMGTPSAPILANITLAISERRRLEKHLH---IYLFRRYIDDIFCIVKDTERVTYQFLSSL-YQELDLKLKFDMTQDKIEFLDLIVYKGIRWRIDGRLDLRTHQKKLNLYSYLPYRSAHPIHCKTGFMTGE 798
P Y+LPKIHK + GRPI +G P S + +LQP++ N+ T LKD+ L++ + ++ V +L + D+VSLY S+ + I ++ T N P+ + FL LN VLK Y +F+ + + +G MG AP AN+ + + E+ KH + I L+ RY+DDI I K + ++ ++ +K + ++ I FLD+ + G DG L ++K + + L S H C TG G+
Sbjct: 151 PVLYVLPKIHKSMIDPPGRPIVSGVGSVLEPLSKFVDSYLQPLVQNINTCLKDTNDLLKRLNQISVLDKDV-SLCSIDIVSLYTSIPQDDGLKCIEEILLET------NLPNDLIFFLLDCLNLVLKKNYFRFEEEYYWQRQGTSMGAAVAPSFANLYVHMLEKALFFKHKYSANIELYLRYVDDILVIWKGDVSLFHEMIAEANIGHPTIKFTTETSKTSINFLDVKIGIG-----DGSLTTDLYRKPTDKNNLLKATSFHYPRCITGIPKGQ 412 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5068.12343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5068.12343.1 >prot_H-paniculata_contig5068.12343.1 ID=prot_H-paniculata_contig5068.12343.1|Name=mRNA_H-paniculata_contig5068.12343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp MGTPSAPILANITLAISERRRLEKHLHIYLFRRYIDDIFCIVKDTERVTYback to top mRNA from alignment at H-paniculata_contig5068:13668..14465- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5068.12343.1 ID=mRNA_H-paniculata_contig5068.12343.1|Name=mRNA_H-paniculata_contig5068.12343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=798bp|location=Sequence derived from alignment at H-paniculata_contig5068:13668..14465- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5068:13668..14465- >mRNA_H-paniculata_contig5068.12343.1 ID=mRNA_H-paniculata_contig5068.12343.1|Name=mRNA_H-paniculata_contig5068.12343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig5068:13668..14465- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |