mRNA_H-paniculata_contig50674.12340.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50674.12340.1
Unique NamemRNA_H-paniculata_contig50674.12340.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig50674.12340.1 vs. uniprot
Match: A0A6H5K0T5_9PHAE (Mur_ligase_M domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0T5_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.100e-17
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1
Query:    1 QGSVALKMARSLQLGGIRTGLFVSPHVSCFRERMQVDGELISEEGVEEILPKV 159
            +GSVA KMARSLQLGG++TGLFVSPH+SCFRER+QVDG  I E  +E+ILP++
Sbjct:   52 KGSVAFKMARSLQLGGLKTGLFVSPHMSCFRERVQVDGAFIPESSIEDILPRI 104          
BLAST of mRNA_H-paniculata_contig50674.12340.1 vs. uniprot
Match: A0A1W0A653_9STRA (Folylpolyglutamate synthase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A653_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.490e-16
Identity = 37/55 (67.27%), Postives = 48/55 (87.27%), Query Frame = 1
Query:    1 QGSVALKMARSLQLGGIRTGLFVSPHVSCFRERMQVDGELISEEGVEEILPKVMT 165
            +GSV+ K+A SLQ GG +TGLFVSPHVSCFRER+QV+G+LI E+ VE+ILP++ T
Sbjct:   52 KGSVSWKLANSLQAGGFKTGLFVSPHVSCFRERIQVNGQLIREDDVEKILPELFT 106          
BLAST of mRNA_H-paniculata_contig50674.12340.1 vs. uniprot
Match: A0A7S4D644_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D644_HETAK)

HSP 1 Score: 72.8 bits (177), Expect = 6.650e-14
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 1
Query:    1 QGSVALKMARSLQLGGIRTGLFVSPHVSCFRERMQVDGELISEEGVEEILPKVM 162
            +GSVALK+A+ L+  G  TGLFVSPH+S FRERMQV+G +ISEE VE +LP ++
Sbjct:   56 KGSVALKIAKGLEASGHSTGLFVSPHISSFRERMQVNGAMISEESVENLLPPIL 109          
BLAST of mRNA_H-paniculata_contig50674.12340.1 vs. uniprot
Match: A0A418B7Z8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B7Z8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.870e-13
Identity = 32/53 (60.38%), Postives = 45/53 (84.91%), Query Frame = 1
Query:    1 QGSVALKMARSLQLGGIRTGLFVSPHVSCFRERMQVDGELISEEGVEEILPKV 159
            +GSV+ K+A++L+  G +TGLFVSPHVSCFRER+QV+G LISE  +E++LP +
Sbjct:   53 KGSVSWKLAKALESSGFKTGLFVSPHVSCFRERIQVNGNLISEAQLEDLLPTI 105          
BLAST of mRNA_H-paniculata_contig50674.12340.1 vs. uniprot
Match: A0A485LQH4_9STRA (Aste57867_24426 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQH4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.440e-13
Identity = 33/56 (58.93%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    1 QGSVALKMARSLQLGGIRTGLFVSPHVSCFRERMQVDGELISEEGVEEILPKVMTQ 168
            +GSV+ K+A++L+  G +TGLFVSPHVSCFRER+QV+  LISE  VE +LP++  Q
Sbjct:   53 KGSVSWKLAKALEASGFKTGLFVSPHVSCFRERIQVNSALISEAQVEALLPQIFNQ 108          
BLAST of mRNA_H-paniculata_contig50674.12340.1 vs. uniprot
Match: A0A7S1VY12_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VY12_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.510e-13
Identity = 34/55 (61.82%), Postives = 46/55 (83.64%), Query Frame = 1
Query:    1 QGSVALKMARSLQLGGIRTGLFVSPHVSCFRERMQVDGELISEEGVEEILPKVMT 165
            +GSV+LK+A+SL+L G + GLFVSPHV+ FRERMQV+ +++SEE V  +LPKV T
Sbjct:  209 KGSVSLKIAKSLELAGHKVGLFVSPHVASFRERMQVNSQIMSEEDVVSLLPKVFT 263          
BLAST of mRNA_H-paniculata_contig50674.12340.1 vs. uniprot
Match: A0A6G0XEY0_9STRA (Mur_ligase_M domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XEY0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.270e-13
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1
Query:    1 QGSVALKMARSLQLGGIRTGLFVSPHVSCFRERMQVDGELISEEGVEEILPKV 159
            +GSV+ K+A++LQ  G +TGLFVSPHV+CFRER+QV+ ELISE  VE +LP +
Sbjct:   31 KGSVSWKLAKALQASGFKTGLFVSPHVACFRERIQVNSELISETQVEALLPTI 83          
BLAST of mRNA_H-paniculata_contig50674.12340.1 vs. uniprot
Match: A0A024USH5_9STRA (Mur_ligase_M domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024USH5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.340e-13
Identity = 32/53 (60.38%), Postives = 45/53 (84.91%), Query Frame = 1
Query:    1 QGSVALKMARSLQLGGIRTGLFVSPHVSCFRERMQVDGELISEEGVEEILPKV 159
            +GSV+ K+A++L+  G +TGLFVSPHVSCFRER+QV+G LISE  +E++LP +
Sbjct:   53 KGSVSWKLAKALESSGFKTGLFVSPHVSCFRERIQVNGNLISEAQLEDLLPTI 105          
BLAST of mRNA_H-paniculata_contig50674.12340.1 vs. uniprot
Match: A0A418DHN4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DHN4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.550e-13
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 1
Query:    1 QGSVALKMARSLQLGGIRTGLFVSPHVSCFRERMQVDGELISEEGVEEILPKV 159
            +GSV+ K+A++L+  G +TGLFVSPHVSCFRER+QV+  LISE+ VE +LP +
Sbjct:   53 KGSVSWKLAKALESSGFKTGLFVSPHVSCFRERIQVNSALISEDQVEALLPHI 105          
BLAST of mRNA_H-paniculata_contig50674.12340.1 vs. uniprot
Match: T0QQ13_SAPDV (Mur_ligase_M domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QQ13_SAPDV)

HSP 1 Score: 71.2 bits (173), Expect = 4.540e-13
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 QGSVALKMARSLQLGGIRTGLFVSPHVSCFRERMQVDGELISEEGVEEILP 153
            +GSV+ K+A++L+  G +TGLFVSPHVSCFRER+Q++GELISE  VE  LP
Sbjct:   53 KGSVSWKLAKALEASGFKTGLFVSPHVSCFRERIQINGELISEADVETHLP 103          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50674.12340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0T5_9PHAE1.100e-1771.70Mur_ligase_M domain-containing protein n=2 Tax=Ect... [more]
A0A1W0A653_9STRA4.490e-1667.27Folylpolyglutamate synthase n=1 Tax=Thraustotheca ... [more]
A0A7S4D644_HETAK6.650e-1462.96Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A418B7Z8_9STRA1.870e-1360.38Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485LQH4_9STRA2.440e-1358.93Aste57867_24426 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S1VY12_9STRA2.510e-1361.82Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A6G0XEY0_9STRA3.270e-1362.26Mur_ligase_M domain-containing protein n=1 Tax=Aph... [more]
A0A024USH5_9STRA3.340e-1360.38Mur_ligase_M domain-containing protein n=1 Tax=Aph... [more]
A0A418DHN4_9STRA3.550e-1360.38Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
T0QQ13_SAPDV4.540e-1364.71Mur_ligase_M domain-containing protein n=2 Tax=Sap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50674contigH-paniculata_contig50674:797..967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue4.7e-12
Seed eggNOG ortholog2880.D8LR03
KEGG rclassRC00064,RC00090,RC00162
KEGG koko:K01930,ko:K11754
KEGG ReactionR00942,R02237,R04241
KEGG Pathwayko00790,ko01100,ko01523,map00790,map01100,map01523
KEGG ModuleM00126,M00841
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.tetrahydrofolylpolyglutamate synthase activity
EggNOG OGsCOG0285@1,KOG2525@2759
EC6.3.2.12,6.3.2.17
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size171
Cds size150
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930488.2596111-CDS-H-paniculata_contig50674:796..9461622930488.2596111-CDS-H-paniculata_contig50674:796..946Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50674 797..946 -
1691481314.7234173-CDS-H-paniculata_contig50674:796..9461691481314.7234173-CDS-H-paniculata_contig50674:796..946Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50674 797..946 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930488.2717037-UTR-H-paniculata_contig50674:946..9671622930488.2717037-UTR-H-paniculata_contig50674:946..967Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50674 947..967 -
1691481314.734907-UTR-H-paniculata_contig50674:946..9671691481314.734907-UTR-H-paniculata_contig50674:946..967Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50674 947..967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50674.12340.1prot_H-paniculata_contig50674.12340.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50674 797..946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50674.12340.1

>prot_H-paniculata_contig50674.12340.1 ID=prot_H-paniculata_contig50674.12340.1|Name=mRNA_H-paniculata_contig50674.12340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
MARSLQLGGIRTGLFVSPHVSCFRERMQVDGELISEEGVEEILPKVMTQ*
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mRNA from alignment at H-paniculata_contig50674:797..967-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50674.12340.1 ID=mRNA_H-paniculata_contig50674.12340.1|Name=mRNA_H-paniculata_contig50674.12340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at H-paniculata_contig50674:797..967- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGCTCCGTGGCTCTGAAGATGGCCCGGTCCCTGCAGCTGGGCGGCAT CCGCACTGGTCTGTTCGTATCGCCGCATGTGTCATGCTTCAGAGAGAGGA TGCAGGTGGACGGGGAGCTGATATCGGAGGAGGGCGTCGAGGAAATTTTG CCAAAGGTGATGACGCAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig50674:797..967-

>mRNA_H-paniculata_contig50674.12340.1 ID=mRNA_H-paniculata_contig50674.12340.1|Name=mRNA_H-paniculata_contig50674.12340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig50674:797..967- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCCGGTCCCTGCAGCTGGGCGGCATCCGCACTGGTCTGTTCGTATC
GCCGCATGTGTCATGCTTCAGAGAGAGGATGCAGGTGGACGGGGAGCTGA
TATCGGAGGAGGGCGTCGAGGAAATTTTGCCAAAGGTGATGACGCAGTGA
ATGGCCCGGTCCCTGCAGCTGGGCGGCATCCGCACTGGTCTGTTCGTATC
GCCGCATGTGTCATGCTTCAGAGAGAGGATGCAGGTGGACGGGGAGCTGA
TATCGGAGGAGGGCGTCGAGGAAATTTTGCCAAAGGTGATGACGCAGTGA
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