mRNA_H-paniculata_contig50670.12339.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50670.12339.1
Unique NamemRNA_H-paniculata_contig50670.12339.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50670.12339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50670contigH-paniculata_contig50670:167..489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size323
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930488.220776-CDS-H-paniculata_contig50670:166..4871622930488.220776-CDS-H-paniculata_contig50670:166..487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50670 167..487 +
1691481314.7108438-CDS-H-paniculata_contig50670:166..4871691481314.7108438-CDS-H-paniculata_contig50670:166..487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50670 167..487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50670.12339.1prot_H-paniculata_contig50670.12339.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50670 167..487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50670.12339.1

>prot_H-paniculata_contig50670.12339.1 ID=prot_H-paniculata_contig50670.12339.1|Name=mRNA_H-paniculata_contig50670.12339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
ATTSRTRNTINSTSSLSLSSKTLPNGGTATAGGMRTTPLRPLQHRNQNST
VDNNINSHGIRATTPTRQAASAASGRQGLGCVGLGRSAAAATTTAAAGAS
GVAGLKG
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mRNA from alignment at H-paniculata_contig50670:167..489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50670.12339.1 ID=mRNA_H-paniculata_contig50670.12339.1|Name=mRNA_H-paniculata_contig50670.12339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=323bp|location=Sequence derived from alignment at H-paniculata_contig50670:167..489+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAACAACAAGTAGGACAAGGAACACTATCAACTCAACGTCGTCCTTATC
GTTATCCTCCAAAACATTGCCAAATGGTGGCACTGCCACCGCCGGTGGAA
TGAGGACGACGCCCCTCCGACCACTCCAACATCGTAATCAAAACTCGACC
GTAGACAACAATATCAACAGCCACGGTATTCGCGCCACGACCCCGACTCG
CCAAGCAGCGAGTGCAGCGTCGGGCAGACAGGGCTTGGGCTGCGTTGGAC
TAGGCCGAAGCGCTGCGGCTGCGACGACAACGGCGGCGGCAGGTGCTTCC
GGGGTTGCGGGTTTGAAGGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig50670:167..489+

>mRNA_H-paniculata_contig50670.12339.1 ID=mRNA_H-paniculata_contig50670.12339.1|Name=mRNA_H-paniculata_contig50670.12339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig50670:167..489+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAACAACAAGTAGGACAAGGAACACTATCAACTCAACGTCGTCCTTATC
GTTATCCTCCAAAACATTGCCAAATGGTGGCACTGCCACCGCCGGTGGAA
TGAGGACGACGCCCCTCCGACCACTCCAACATCGTAATCAAAACTCGACC
GTAGACAACAATATCAACAGCCACGGTATTCGCGCCACGACCCCGACTCG
CCAAGCAGCGAGTGCAGCGTCGGGCAGACAGGGCTTGGGCTGCGTTGGAC
TAGGCCGAAGCGCTGCGGCTGCGACGACAACGGCGGCGGCAGGTGCTTCC
GGGGTTGCGGGTTTGAAGGGGGCAACAACAAGTAGGACAAGGAACACTAT
CAACTCAACGTCGTCCTTATCGTTATCCTCCAAAACATTGCCAAATGGTG
GCACTGCCACCGCCGGTGGAATGAGGACGACGCCCCTCCGACCACTCCAA
CATCGTAATCAAAACTCGACCGTAGACAACAATATCAACAGCCACGGTAT
TCGCGCCACGACCCCGACTCGCCAAGCAGCGAGTGCAGCGTCGGGCAGAC
AGGGCTTGGGCTGCGTTGGACTAGGCCGAAGCGCTGCGGCTGCGACGACA
ACGGCGGCGGCAGGTGCTTCCGGGGTTGCGGGTTTGAAGGGG
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