mRNA_H-paniculata_contig5067.12338.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5067.12338.1
Unique NamemRNA_H-paniculata_contig5067.12338.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5067.12338.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 508 bits (1307), Expect = 9.290e-169
Identity = 276/499 (55.31%), Postives = 332/499 (66.53%), Query Frame = 3
Query:  216 IAVLGAFA-LAPAAVAK----NRPIPQPACDGTKSVDIRYSGASKRLYVEGAGG-VRGGCVTLSQIYETRVGKPPLYPVNPVSGARTTNVTGTWLLTESLHVEDGITLNVHGGSTG-DADELRLLSNADGFIEFRAHGASLSFRDTKVVSWDETAGDYDRNVTDGRSFITVISEVMTD-NRTCVGMAMKSMGEARMDIVKSEMGFLGYYDSESYGLTWKVRGFCADKSNPEVFDDVNVYGNIYDSDIHHNYFGVYTYGHQQGDWRRNKMHHNIQYGFDPHDDSDYLNIHDNEVWRNGNHGIIASKRCNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ALLESFNADVSDNVFQDNTYGIRMSVGSANNMFSYNDILDSVKYNCYTYMGTDLPYVAATGRVLNNKFVGNTLSGGRETIKLKESSGTLFENNSF----TDATVIRLDDA-DAIMKNNTGLR--GVEMKTVAGGCFDLNSDPGFRPTC 1661
            +A+LG  A   PAA A     N PI +P CD    V IRY+G +KRLY+E A G  RGGC TL QI+E+R GK PLY V+P SG  +   TGTWLLTE L+VEDGITL V+G   G DADELRLLS ++ +I  RAHG SL F  TKV SWD +    D + TDGRS+I+ +SE++TD + TC G A  +MGEARMDI  SE+G+LG+ DSESYGLTWKVRGFC DKSNPE+FDDVNVYGN+YDSDIHH  FG+YTYGHQQGDWRRNKMH N  YGFDPHDDSD+L IHDNEV+ NG HGIIASKRCN                                           A+LESFNADVS+N F++N YG+RMSVG A+N+FS N I ++ KYN YTY+G+D P V ++GR  NN F  N+ SG  ETIK+KE+ GT F +N F     D  V+R DDA +++M+ NTGL     E+K     CFD  SD G+ P C
Sbjct:   14 LALLGLLASTTPAAAADTASPNDPISKPDCDSDIEVSIRYAGTTKRLYLESADGETRGGCATLGQIWESRAGKAPLYAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNTGLDEGDFELKVTNDSCFDGESDSGYEPVC 512          
BLAST of mRNA_H-paniculata_contig5067.12338.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA)

HSP 1 Score: 498 bits (1281), Expect = 4.760e-165
Identity = 271/473 (57.29%), Postives = 322/473 (68.08%), Query Frame = 3
Query:  261 KNRPIPQPACDGTKSVDIRYSGASKRLYVEGA-GGVRGGCVTLSQIYETRVGKPPLYPVNPVSGARTTNVTGTWLLTESLHVEDGITLNVHGGSTGD-ADELRLLSNADGFIEFRAHGASLSFRDTKVVSWDETAGDYDRNVTDGRSFITVISEVMTDNRT-CVGMAMKSMGEARMDIVKSEMGFLGYYDSESYGLTWKVRGFCADKSNPEVFDDVNVYGNIYDSDIHHNYFGVYTYGHQQGDWRRNKMHHNIQYGFDPHDDSDYLNIHDNEVWRNGNHGIIASKRCNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ALLESFNADVSDNVFQDNTYGIRMSVGSANNMFSYNDILDSVKYNCYTYMGTDLPYVAATGRVLNNKFVGNTLSGGRETIKLKESSGTLFENNSFTDATVIRLDDADA-IMKNNTGLRGVEMKTVAGGCFDLNSDPGFRPTC 1661
            +N+ I +P+C  +  V IRYS  SKRLY+E A G  RGGCVTL  I+    G  PLY V P SG  ++++TGTWLLTESL+VEDGITL VHG S G  ADELRLLS +  FI  RAHG SL F  TKV +WD +      + + GRS+I+ +SEV+TD++  C G A K+MGEARMDI  SEM +LGY+ SESYGLTWKVRG C D SN EVFD VNVYGNIYDSDIHHNYFGVYTYGH+QGDWRRNKMHHN +YGFDPHDDSD+L IHDNEV+ NGNHGIIASKRCN XXXXXXXXXX                                AL+E+FNADVS+N F+DN YGIRMSVG A+N+FS NDI  S KYN YTY G+D P+V  +GR  +        SGG+ET+KL  + GT F +N+F  A  IR +D    +M  N+GL G  +K   G CFD  SD  ++P C
Sbjct:   27 RNKAIAKPSCKSSTKVSIRYSKTSKRLYLESADGNTRGGCVTLEDIWRDLDGGAPLYAVKPSSGDVSSSITGTWLLTESLYVEDGITLQVHGKSAGGKADELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDDSKGRSYISAVSEVITDSKQKCDGRAKKNMGEARMDIEDSEMAYLGYFGSESYGLTWKVRGLCRDLSNLEVFDAVNVYGNIYDSDIHHNYFGVYTYGHEQGDWRRNKMHHNTEYGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCNGXXXXXXXXXXGAAKSVGIFLHRSSDDAIVKDNYVHDNGDAGMALMETFNADVSNNKFEDNKYGIRMSVGCADNVFSKNDITGSSKYNVYTYQGSDAPWVVDSGRSQDXXXXXXXXSGGQETVKLTMADGTEFIDNTFKSAKTIRFEDCQGTLMSGNSGLGGASLKVTDGSCFDKKSDSAYKPVC 499          
BLAST of mRNA_H-paniculata_contig5067.12338.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 497 bits (1279), Expect = 1.290e-164
Identity = 263/466 (56.44%), Postives = 316/466 (67.81%), Query Frame = 3
Query:  303 SVDIRYSGASKRLYVEGA--GGVRGGCVTLSQIYETRVGKPPLYPVNPVSGARTTNVTGTWLLTESLHVEDGITLNVHGGSTG-DADELRLLSNADGFIEFRAHGASLSFRDTKVVSWDETAGDYDRNVTDGRSFITVISEVMTD-NRTCVGMAMKSMGEARMDIVKSEMGFLGYYDSESYGLTWKVRGFCADKSNPEVFDDVNVYGNIYDSDIHHNYFGVYTYGHQQGDWRRNKMHHNIQYGFDPHDDSDYLNIHDNEVWRNGNHGIIASKRCNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ALLESFNADVSDNVFQDNTYGIRMSVGSANNMFSYNDILDSVKYNCYTYMGTDLPYVAATGRVLNNKFVGNTLSGGRETIKLKESSGTLFENNSF----TDATVIRLDDA-DAIMKNNTGLRG--VEMKTVAGGCFDLNSDPGFRPTC 1661
            +V IRY+G + RLY+E A  G  RGGCVTL QI+E+R GK PLY V+P SG  +T+ TGTWLLTE L+VEDGITL V+G   G DADELRLLS  + FI  RAHG SL F  TKV SWD +    D + TDGRS+I+ ISE++TD + TC G A  +MGEARMDI  SE+G+LGY+DSESYGLTWKVRGFC DKSNPEVFDDVNVYGN+YDSDIHH  FG+YTYGHQQGDWRRNKMH N  YGFDPHDDSD+L IHDNEV+ NG HGIIASKRCN                                           A+LESFNADVS+N F++N YG+R SVG A+N+FS N I ++ +YN Y+Y+GTD P V ++GR  NN F  N+ SG  ETIK+KE+ GT F +N F     D  V+R D+A + +M+ NTGL     E+K     CFD  +D G+ P C
Sbjct:   43 AVSIRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATENLMQGNTGLDDGEFELKVDNDACFDGEADSGYEPVC 508          
BLAST of mRNA_H-paniculata_contig5067.12338.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 495 bits (1274), Expect = 2.200e-164
Identity = 259/466 (55.58%), Postives = 313/466 (67.17%), Query Frame = 3
Query:  276 PQPACDGTKSVDIRYSGASKRLYVEGAGG-VRGGCVTLSQIYETRVGKPPLYPVNPVSGARTTNVTGTWLLTESLHVEDGITLNVHGGSTG-DADELRLLSNADGFIEFRAHGASLSFRDTKVVSWDETAGDYDRNVTDGRSFITVISEVMTDNR-TCVGMAMKSMGEARMDIVKSEMGFLGYYDSESYGLTWKVRGFCADKSNPEVFDDVNVYGNIYDSDIHHNYFGVYTYGHQQGDWRRNKMHHNIQYGFDPHDDSDYLNIHDNEVWRNGNHGIIASKRCNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ALLESFNADVSDNVFQDNTYGIRMSVGSANNMFSYNDILDSVKYNCYTYMGTDLPYVAATGRVLNNKFVGNTLSGGRETIKLKESSGTLFENNSFTDATVIRLDDAD-AIMKNNTGLRGVEMKTVAGGCFDLNSDPGFRP 1655
            P+P CD + +V +RY+  S RLY+E A G  RGGCVTL QI+E +V   PLY V+P SG  + + TGTWLLTE ++VEDGITL VHG S G DADELRLLS +D FI  RA+G SL F  TKV +WD +    D++ +DGRS+I+ +SEV+TD+R TC G A  +MGEARMDI  SEM +LGY+ +E+YGLTWKVRGFC DK NPE+FDDVNVYGNIYDSDIHHN FGVYTYGHQQGDWRRNKMH N  YGFDPHDDSD+L IHDNEVW NG HGIIASKRCN                                           A+LESFNADVSDN F++N YG+R+SVG   N+FS N I  S ++N ++Y+G D P V  +GR  +N F+ N + GG E+I LKE+ GT F +N+F DA  IR  DA   +M  NTGL    +K   G  FD +SD GF P
Sbjct:    6 PKPDCDSSIAVSVRYNAESARLYIESANGRTRGGCVTLEQIWEQQVDGSPLYAVDPKSGDVSRSATGTWLLTEEMYVEDGITLQVHGISAGGDADELRLLSTSDTFIHLRAYGGSLDFLSTKVFAWDTSKNAPDQDESDGRSYISAVSEVITDDRQTCNGRAKNNMGEARMDIENSEMAYLGYHGTETYGLTWKVRGFCVDKGNPELFDDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVWNNGYHGIIASKRCNGVSIQGNEVYGGSSGSAGIFLHRSSDNGIVKGNYVHDNGDAGLAMLESFNADVSDNTFENNKYGVRLSVGCGRNIFSKNVITGSAEFNTFSYLGADKPEVVDSGRSQDNVFMENNIIGGVESILLKEADGTQFIDNTFKDAAAIRFVDATKTLMSGNTGLADSTLKVDRGATFDESSDHGFEP 471          
BLAST of mRNA_H-paniculata_contig5067.12338.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 496 bits (1276), Expect = 2.680e-164
Identity = 279/470 (59.36%), Postives = 333/470 (70.85%), Query Frame = 3
Query:  264 NRPIPQPACDGTKSVDIRYSGASKRLYVEGAGG-VRGGCVTLSQIYETRVGKPPLYPVNPVSGARTTNVTGTWLLTESLHVEDGITLNVHGGSTG-DADELRLLSNADGFIEFRAHGASLSFRDTKVVSWDETAGDYDRNVTDGRSFITVISEVMTDN-RTCVGMAMKSMGEARMDIVKSEMGFLGYYDSESYGLTWKVRGFCADKSNPEVFDDVNVYGNIYDSDIHHNYFGVYTYGHQQGDWRRNKMHHNIQYGFDPHDDSDYLNIHDNEVWRNGNHGIIASKRCNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ALLESFNADVSDNVFQDNTYGIRMSVGSANNMFSYNDILDSVKYNCYTYMGTDLPYVAATGRVLNNKFVGNTLSGGRETIKLKESSGTLFENNSFTDATVIRLDDAD-AIMKNNTGLRGVEMKTVAGGCFDLNSDPGFRP 1655
            N PIP+P CD + +V IRYS   +RLY+E A    RGGCVTL QI+E + G+ PLY V+  SG  + + TGTWLLTE L VEDGITL VHG S G DADELRLLS +D FI  RAHG SL F  TKV +WD +    DR+  DGRS+++ +SEV+TD+ +TC G A  +MGEARMDI  SEMG+LGY+ SESYGLTWKVRGFC DKSN ++F+DVNVYGNIYDSDIHHN FGVYTYGHQQGDWRRNKMH N  YGFDPHDDSD+L IHDNEV+ NG HGIIASKRCN                       XXXXXXXXXXXXXXXX    A++ESFNADVSDN+F++N YGIR SVGS  N+F  N I  S +Y+ Y+Y+G+D P V  +GR  +N F  N + GG E+IKL ++ GT F +N+F DAT IR +DA   +M  N GL   ++K V G  FD +SD GF P
Sbjct:   28 NEPIPKPECDESIAVSIRYSSVYERLYLESADSKTRGGCVTLEQIWEHQRGEAPLYAVDSKSGDISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTFINLRAHGGSLDFLSTKVFAWDTSINGPDRDEEDGRSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGATSSAGIFLHRXXXXXXXXXXXXXXXXDAGLAMMESFNADVSDNIFENNKYGIRFSVGSGRNVFFNNVISGSTRYSTYSYLGSDAPDVVDSGRSQDNVFQENNIIGGVESIKLLDADGTQFIDNTFEDATTIRFNDAKKTLMSGNIGLNMSKLKVVNGASFDASSDYGFEP 497          
BLAST of mRNA_H-paniculata_contig5067.12338.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE)

HSP 1 Score: 463 bits (1192), Expect = 1.140e-151
Identity = 262/473 (55.39%), Postives = 320/473 (67.65%), Query Frame = 3
Query:  261 KNRPIPQPACDGTKSVDIRYSGASKRLYVEGAGG-VRGGCVTLSQIYETRVGKPPLYPVNPVSGARTTNVTGTWLLTESLHVEDGITLNVHGGSTG-DADELRLLSNADGFIEFRAHGASLSFRDTKVVSWDETAGDYDRNVTDGRSFITVISEVMTDNRT-CVGMAMKSMGEARMDIVKSEMGFLGYYDSESYGLTWKVRGFCADKSNPEVFDDVNVYGNIYDSDIHHNYFGVYTYGHQQGDWRRNKMHHNIQYGFDPHDDSDYLNIHDNEVWRNGNHGIIASKRCNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ALLESFNADVSDNVFQDNTYGIRMSVGSANNMFSYNDILDSVKYNCYTYMGTDLPYVAATGRVLNNKFVGNTLSGGRETIKLKESSGTLFENNSFTDATVIRLDDADA-IMKNNTGLRGVEMKTVAGGCFDLNSDPGFRPTC 1661
            KN+ I +P+C  +  V IRYS +SKRLY+E A G  RGGCVTL +I++   G  PLY V P SG  +++ TGTWLLTE L+VEDGITL VHG S G +A+ELRLLS +  FI  RAHG SL F  TKV +WD +      + +  RS+I+ +SE++TD++  C G A K+MGEARMDI  SEM +LGY  SESYGLTWKVRGFC D SNPEVFD+VNVYGNIYDSDIHHN+FGVYTYGH+QGDWRRNKMHHN +YGFDPHDDSD+L IHDN+V               XXXXXXXXXXX                      XXXX      AL+ESFNADVS+N F+DN YG+R+SVG A+N+FS N I DS KYN YTY G+D P+V  +GR  +N F  NT++GG E+IKL  + GT F +N+F  A   R +DA+  +M  NTGL    +K   G CFD  SD  ++P C
Sbjct:   30 KNKAISKPSCKSSTKVSIRYSASSKRLYLESADGKTRGGCVTLEEIWKDLDGSAPLYAVKPSSGDVSSSATGTWLLTEDLYVEDGITLQVHGTSAGGNANELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDGSKARSYISAVSEIITDSKEKCDGKAKKTMGEARMDIEDSEMAYLGYQGSESYGLTWKVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNREYGFDPHDDSDFLTIHDNKVXXXXXXXXXXXXXXXXXXXXXXXXXXGSSKSVGIFLHRSSDDAIVKDNXXXXNGDAGMALMESFNADVSNNKFEDNKYGVRLSVGCADNVFSKNVISDSSKYNVYTYEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKRAKTARFEDAETTLMSGNTGLGSATLKVSKGACFDKKSDSDYKPVC 502          
BLAST of mRNA_H-paniculata_contig5067.12338.1 vs. uniprot
Match: D8LD45_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD45_ECTSI)

HSP 1 Score: 438 bits (1127), Expect = 1.090e-140
Identity = 244/474 (51.48%), Postives = 298/474 (62.87%), Query Frame = 3
Query:  264 NRPIPQPACDGTKSVDIRYSGASKRLYVE-GAGGVRGGCVTLSQIYETRVG------KPPLYPVNPVSGARTTNVTGTWLLTESLHVEDGITLNVHG-GSTGDADELRLLSNA---DG----FIEFRAHGASLSFRDTKVVSWDETAGDYDRNVTDGRSFITVISEVMTD-NRTCVGMAMKSMGEARMDIVKSEMGFLGYYDSESYGLTWKVRGFCADKSNPEVFDDVNVYGNIYDSDIHHNYFGVYTYGHQQGDWRRNKMHHNIQYGFDPHDDSDYLNIHDNEVWRNGNHGIIASKRCNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ALLESFNADVSDNVFQDNTYGIRMSVGSANNMFSYNDILDSVKYNCYTYMGTDLPYVAATGRVLNNKFVGNTLSGGRETIKLKESSGTLFENNSFTDATVIRLDDA-DAIMKNNTGLR-GVEMKTVAGGCF 1625
            N PIP+P C+ T++V IRYS  + RLY+E G  G RGGCVT+ QI+E R G      K PLY V+PVSG  +  +TGTWLL E L+VEDGITL V G GS G ADELRL S     DG    +I  RAHG SL F  TKV  WD T   YD + TDGRS+I+ +SE++ D  +TC G A  +MGEARMDIV SEMG++G++DSESYGLTWKVRGFC DKSNPEVFD VNVYGNIYDS++HH  F VYTYGHQQGDWRRN +H N  YG+DPHDDSD+L IHDN V+ N  HGIIASKRCN                                           A+LES NA++S N+F+ N YGIRMSVG  +N  S N + ++ +Y  YTY G+D   V  TGR  +N F  NT+ GG + IKLKES GT   NN F +  ++   +  + ++  N GL    E++ V   CF
Sbjct:  107 NTPIPKPECNSTQAVSIRYSATTGRLYLEAGVEGERGGCVTVEQIWEARGGGTTTGAKAPLYAVDPVSGEYSDVITGTWLLEEDLYVEDGITLKVWGNGSGGYADELRLKSTPPTEDGGNGTYINLRAHGGSLDFEHTKVFGWDTTNNSYDMDETDGRSYISAVSEIVLDPTQTCEGNAKNTMGEARMDIVNSEMGYMGFHDSESYGLTWKVRGFCKDKSNPEVFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTVHSNSGYGYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIVYGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYGIRMSVGCRDNFVSNNTMTNTSQYAIYTYQGSDPAEVQPTGRSQDNIFDSNTVVGGPQAIKLKESDGTRITNNVFYEPGLVEFSNTTENVVTGNVGLEDATEVELVEPACF 580          
BLAST of mRNA_H-paniculata_contig5067.12338.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 412 bits (1060), Expect = 2.130e-133
Identity = 215/361 (59.56%), Postives = 253/361 (70.08%), Query Frame = 3
Query:  303 SVDIRYSGASKRLYVEGA--GGVRGGCVTLSQIYETRVGKPPLYPVNPVSGARTTNVTGTWLLTESLHVEDGITLNVHGGSTG-DADELRLLSNADGFIEFRAHGASLSFRDTKVVSWDETAGDYDRNVTDGRSFITVISEVMTD-NRTCVGMAMKSMGEARMDIVKSEMGFLGYYDSESYGLTWKVRGFCADKSNPEVFDDVNVYGNIYDSDIHHNYFGVYTYGHQQGDWRRNKMHHNIQYGFDPHDDSDYLNIHDNEVWRNGNHGIIASKRCNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ALLESFNADVSDNVFQDNTYGIRMSVGSANNMFSYNDILDSVK 1367
            +V IRY+ ++ RLY+E A  G  RGGCVTL QI+E+R GK PLY V+P SG  +T+ TGTWLLTE L+VEDGITL V+G   G DADELRLLS  + FI  RAHG SL F  TKV SWD +    D + TDGRS+I+ ISE++TD + TC G A  +MGEARMDI  SE+G+LGY+DSESYGLTWKVRGFC DKSNPEVFDDVNVYGN+YDSDIHH  FG+YTYGHQQGDWRRNKMH N  YGFDPHDDSD+L IHDNEV+ NG HGIIASKRCN                                           A+LESFNADVS+N F++N YG+R SVG A+N+FS N I ++ +
Sbjct:   43 AVSIRYAESTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAE 403          
BLAST of mRNA_H-paniculata_contig5067.12338.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 380 bits (975), Expect = 1.220e-121
Identity = 197/312 (63.14%), Postives = 229/312 (73.40%), Query Frame = 3
Query:  198 MAFKRS------IAVLGAFALAPAAVAK-----NRPIPQPACDGTKSVDIRYSGASKRLYVEGAGG-VRGGCVTLSQIYETRVGKPPLYPVNPVSGARTTNVTGTWLLTESLHVEDGITLNVHG-GSTGDADELRLLSNADGFIEFRAHGASLSFRDTKVVSWDETAGDYDRNVTDGRSFITVISEVMTD-NRTCVGMAMKSMGEARMDIVKSEMGFLGYYDSESYGLTWKVRGFCADKSNPEVFDDVNVYGNIYDSDIHHNYFGVYTYGHQQGDWRRNKMHHNIQYGFDPHDDSDYLNIHDNEVWRNGNHG 1091
            M F+RS      +A+LG  A    A A      N PI +P CD   +V IRY+ ++KRLY+E A G  RGGCVTL QI+E R GK PLY V+P SG  + N TGTWLLTE L+VEDGITL V+G G  GDADELRLLS  D +I  RAHG SL F  TKV SWD +    D + TDGRS+I+ ISE++TD + TC G A  +MGEARMDI  SE+G+LG+ DSESYGLTWKVRGFC DKSNP +FD+VNVYGN+YDSDIHH  FG+YTYGHQQGDWRRNKMH N  YGFDPHDDSD+L IHDNEV+ NGNHG
Sbjct:    1 MEFRRSATSSFCLALLGLLAATMRAAAADTASPNDPISKPDCDSDIAVSIRYASSTKRLYLESADGETRGGCVTLGQIWENRAGKAPLYAVDPESGNESENETGTWLLTEELYVEDGITLKVYGTGEGGDADELRLLSTTDTYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGNHG 312          
BLAST of mRNA_H-paniculata_contig5067.12338.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE)

HSP 1 Score: 357 bits (916), Expect = 3.940e-113
Identity = 195/320 (60.94%), Postives = 229/320 (71.56%), Query Frame = 3
Query:  714 EVMTDNRT-CVGMAMKSMGEARMDIVKSEMGFLGYYDSESYGLTWKVRGFCADKSNPEVFDDVNVYGNIYDSDIHHNYFGVYTYGHQQGDWRRNKMHHNIQYGFDPHDDSDYLNIHDNEVWRNGNHGIIASKRCNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ALLESFNADVSDNVFQDNTYGIRMSVGSANNMFSYNDILDSVKYNCYTYMGTDLPYVAATGRVLNNKFVGNTLSGGRETIKLKESSGTLFENNSFTDATVIRLDDA-DAIMKNNTGLRGVEMKTVAGGCFDLNSDPGFRPTC 1661
            E++TD++  C G A K+MGEARMDI  SEM +LGY  SESYGLTWKVRGFC D SNPEVFD+VNVYGNIYDSDIHHN+FGVYTYGH+QGDWRRNKMHHN +YGFDPHDDSD+L IHDNEV+ NGNHGIIASKRCN XXXXXXXXXX                       XX       AL+ESFNADVS+N F+DN YG+RMSVG A+N+FS N I DS +YN YTY G+D P+V  +GR  +N F  NT++GG E+IKL  + GT F +N+F  A  +R +DA D IM  NTGL    +K   G CFD  SD  ++P C
Sbjct:    6 EIITDSKEKCNGKAKKTMGEARMDIEDSEMAYLGYQGSESYGLTWKVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNREYGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCNGXXXXXXXXXXGSSKSVGIFLHRSSDDAIVKDNYXXDNGDAGMALMESFNADVSNNKFEDNKYGVRMSVGCADNVFSKNVISDSSEYNVYTYEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKSAKTVRFEDAQDTIMSGNTGLGSATLKVSKGACFDKKSDSDYKPVC 325          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5067.12338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXE4_ECTSI9.290e-16955.31Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A8CEP1_SACJA4.760e-16557.29Mannuronan C-5 epimerase n=1 Tax=Saccharina japoni... [more]
D7G339_ECTSI1.290e-16456.44Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
Q7XAJ8_9PHAE2.200e-16455.58Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAJ7_9PHAE2.680e-16459.36Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
Q7XAK2_9PHAE1.140e-15155.39Mannuronan C-5-epimerase n=2 Tax=Laminaria digitat... [more]
D8LD45_ECTSI1.090e-14051.48Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FXE5_ECTSI2.130e-13359.56Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JU98_9PHAE1.220e-12163.14MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
Q7XAJ9_9PHAE3.940e-11360.94Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5067contigH-paniculata_contig5067:8546..13957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.7
Seed ortholog evalue9.7e-78
Seed eggNOG ortholog2880.D7G8D9
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons6
Model size2541
Cds size1482
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5067.12338.1prot_H-paniculata_contig5067.12338.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5067 8743..13095 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930488.0700176-UTR-H-paniculata_contig5067:8545..87421622930488.0700176-UTR-H-paniculata_contig5067:8545..8742Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5067 8546..8742 +
1691481314.6142745-UTR-H-paniculata_contig5067:8545..87421691481314.6142745-UTR-H-paniculata_contig5067:8545..8742Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5067 8546..8742 +
1622930488.1771677-UTR-H-paniculata_contig5067:13095..139571622930488.1771677-UTR-H-paniculata_contig5067:13095..13957Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5067 13096..13957 +
1691481314.693722-UTR-H-paniculata_contig5067:13095..139571691481314.693722-UTR-H-paniculata_contig5067:13095..13957Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5067 13096..13957 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930488.082984-CDS-H-paniculata_contig5067:8742..90691622930488.082984-CDS-H-paniculata_contig5067:8742..9069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5067 8743..9069 +
1691481314.6260905-CDS-H-paniculata_contig5067:8742..90691691481314.6260905-CDS-H-paniculata_contig5067:8742..9069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5067 8743..9069 +
1622930488.0956895-CDS-H-paniculata_contig5067:10533..106441622930488.0956895-CDS-H-paniculata_contig5067:10533..10644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5067 10534..10644 +
1691481314.6353748-CDS-H-paniculata_contig5067:10533..106441691481314.6353748-CDS-H-paniculata_contig5067:10533..10644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5067 10534..10644 +
1622930488.1069195-CDS-H-paniculata_contig5067:10779..109921622930488.1069195-CDS-H-paniculata_contig5067:10779..10992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5067 10780..10992 +
1691481314.645592-CDS-H-paniculata_contig5067:10779..109921691481314.645592-CDS-H-paniculata_contig5067:10779..10992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5067 10780..10992 +
1622930488.1180904-CDS-H-paniculata_contig5067:11566..116811622930488.1180904-CDS-H-paniculata_contig5067:11566..11681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5067 11567..11681 +
1691481314.655705-CDS-H-paniculata_contig5067:11566..116811691481314.655705-CDS-H-paniculata_contig5067:11566..11681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5067 11567..11681 +
1622930488.129414-CDS-H-paniculata_contig5067:11942..123451622930488.129414-CDS-H-paniculata_contig5067:11942..12345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5067 11943..12345 +
1691481314.6690092-CDS-H-paniculata_contig5067:11942..123451691481314.6690092-CDS-H-paniculata_contig5067:11942..12345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5067 11943..12345 +
1622930488.1572075-CDS-H-paniculata_contig5067:12782..130951622930488.1572075-CDS-H-paniculata_contig5067:12782..13095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5067 12783..13095 +
1691481314.6837637-CDS-H-paniculata_contig5067:12782..130951691481314.6837637-CDS-H-paniculata_contig5067:12782..13095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5067 12783..13095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5067.12338.1

>prot_H-paniculata_contig5067.12338.1 ID=prot_H-paniculata_contig5067.12338.1|Name=mRNA_H-paniculata_contig5067.12338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=494bp
MAFKRSIAVLGAFALAPAAVAKNRPIPQPACDGTKSVDIRYSGASKRLYV
EGAGGVRGGCVTLSQIYETRVGKPPLYPVNPVSGARTTNVTGTWLLTESL
HVEDGITLNVHGGSTGDADELRLLSNADGFIEFRAHGASLSFRDTKVVSW
DETAGDYDRNVTDGRSFITVISEVMTDNRTCVGMAMKSMGEARMDIVKSE
MGFLGYYDSESYGLTWKVRGFCADKSNPEVFDDVNVYGNIYDSDIHHNYF
GVYTYGHQQGDWRRNKMHHNIQYGFDPHDDSDYLNIHDNEVWRNGNHGII
ASKRCNHVSIQNNEVYDGGQAGLFLHRSTDHATVIGNYVHGNADAGLALL
ESFNADVSDNVFQDNTYGIRMSVGSANNMFSYNDILDSVKYNCYTYMGTD
LPYVAATGRVLNNKFVGNTLSGGRETIKLKESSGTLFENNSFTDATVIRL
DDADAIMKNNTGLRGVEMKTVAGGCFDLNSDPGFRPTCAQPSV*
back to top

mRNA from alignment at H-paniculata_contig5067:8546..13957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5067.12338.1 ID=mRNA_H-paniculata_contig5067.12338.1|Name=mRNA_H-paniculata_contig5067.12338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5412bp|location=Sequence derived from alignment at H-paniculata_contig5067:8546..13957+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCCACATCTTCATTGCACCGTCGCACTAACTCGGACAGAGCGACTTTT CGACACTCTGTTTGATCAAGTACCTCGGTGCCGCCCACTGTATCTTTCTC CATACAAGTAAATTTGATATACCGGGCCTGGGACTTGCTACGTTTTGAGT TCCGAGTGGGGCTTGGCTGCCTCCAACTCTTTTTGGACACTGCAGTGATG GCGTTCAAGCGATCCATTGCTGTGCTGGGCGCATTTGCTCTTGCCCCGGC CGCGGTGGCCAAGAACAGACCAATCCCACAGCCTGCATGTGACGGAACAA AATCGGTGGACATCCGATACTCTGGGGCCTCCAAGCGTTTGTATGTGGAG GGAGCAGGGGGAGTGCGAGGTGGTTGCGTGACCTTATCTCAAATATACGA AACGCGAGTGGGGAAGCCACCTTTATACCCTGTGAATCCGGTGTCCGGAG CGAGAACAACCAATGTGACAGGGACTTGGCTTCTCACCGAGAGCCTTCAC GTCGAGGACGGCATCACCCTTAACGTGAGTCGGAGCAGTTGGATAGGAAT GGGGTGTGGATACGCTCAAGTTGAATTCGAGATTTTAATCCATACCTTAA CTACAAACAAGCCTATGCGCAGCCACTAGCAGTTGGGTATTTCAAACTAA AGATCTGGCTTTGTTACGTGAACGGTTCGATATGTTCGCATTTGGCAATG GATAGGCTCGTCGATGACGTCTGAAAGCCAACCTAGGCTCGTTGGAATAA TATTTGCAAAACAAACGATAGCTTCTACTCGTTCAATTTGCGAGTTCGGC GAGATGCTCCATTTCACAATCCTTGACCGGTCGCCGTTGGATCGGAGCTG GCGGTGTGTAACTGACTGCTCGGATATGGCCGACATTCCGTTTCACATCT AAACGGTATTGATTCACTGGGCGTCTGTGGATGGCAGGACCTCGTGGTCG TAAGGCAAGCCCTGTCGCCAAACGCCCTGGTTCATTGATGTCTTGGTACC TCACAATTCAGTGAGGTGAGTATCGTGCTTTTTCTAGTGTGGTCACATGC ACCGAACTGGGTGGGAGGTGGGCCAAGGTTCCATTCTGGTGGATCAGAAT GAAATTATTAAAGTGTATACAAACTGTGTCGACTTCCAAGTCTGCAGATC GTTATTAAGCGATCTTCGTACTCTCTGGCCGTCCTTGAAATAAAATCGCG TTTTGCATTGAAATTGCTCGAACCGTATCCAGGAGTATGGACTCTTTCCA TGTCGAGTAAGGACCTTGGTATGTTTACTTGGTATCTTCAAGTATACACC ATCGTTAGGGATTACATGTTCAGTAAGGGAAATATCCCCCTGTTTGCAGG CTATCGAAATCACATAGTATTGATTGCCTCTAGGCCATTTACAGAAGTAG TTCCCAATTCCCCCGTAACGAGAGTCTAGCAAAAAGTACTGATATCCCCC AACGAAATGACGATACTATATTTGTAGAGATGCCTCCACGCCGTCCACCT TTATATCCCTTCTAGTGATTTGAGGACATGAAAAATTGGGTTGATCACTC GAAAAGGAGCAATGTCGGTCCCGGAACGTGTCGATGTATTTCCAATTCCA TGGCATAACTCTGACCACGTATCAAATAAATGAAATGAGGTGGAGGAAGT TGAGCCATGAGAAAAACCATGGCTCACCTTCACCAAACTATGGACCATGC TGTGAACAAGTCCGCGTGCGGTATTACTATCTTTTTCCTGACATGCTCCC TAGTTAGCGGATGATGACGACCATTGTCCGAGAAGCCTAAACCATTGTAG AGGATTGTCTCGTGAAAGTATTTGGCTTAGTTGTAACATCTGCAGTATAT GCAAGATCGAAATCAACCAATGTATTTGACTGTGACCTTCGAGAGAGATG GTATATGTGTCGGTTCCCGGTGTCGTGCCCGCAAGTTTGCGTCCTCCCAT CACTTTCTCTAATCCGTACGGCACGTTTCCTACTCCAGGTGCATGGTGGT TCGACCGGAGATGCTGACGAACTTCGACTTCTTTCCAACGCTGATGGCTT CATTGAATTTAGGGCACACGGTGCGAGCTTGAGCTTTCGTGACACCAAGG TACGCAGGCTCAAAACTTGGCTGACCGCATTTTCAAAAATCTTGGAGTCG CGCAATTAAATTGAGAAGTATTTCAAGTTCGTTTGCAACTGTTTATCAAT TTGGCATCAATTATTTCACCTGTTTGTTGAACAGGTCGTCTCGTGGGATG AGACGGCCGGAGATTACGACAGAAATGTAACAGATGGACGATCCTTCATA ACTGTCATCTCGGAAGTGATGACGGACAATCGAACTTGCGTGGGGATGGC GATGAAAAGTATGGGGGAGGCACGCATGGATATCGTGAAAAGTGAAATGG GGTTCCTTGGATACTACGATTCGGAATCGTATGGACTCACGTGGAAGGTG AGTGTATCATCCAAGTCGAAGTAGTCCATTTTCATGATCATATTGTCCTT GAAGTCCCCAACAGCGAAGGCCTCAACCTGCCCCAGGGTTACGTGCGGAG ATGTTTTAGGTTCTTGATTGGAGTTTTTGAATGTTTTCGTTCTTAGTATT GGGGAGAGTCTCAGAAGAAACGGGCAAGACGGAATTATTTAACCCATCAA GGTGGAAAGGTGCCTATTTCATGGGCATGGATTTAGAAACTCTGCTGAAT CCATGTTTGCAACCCGTCTTATGTTGTGGGTATTCTCCGTATTTGGGTCG ACTTTGCTGGTTTGGACGTTGCTTTATTGTCGGCTGTGATCCCTCGCTAG CCGTACCAAATATCGGTTGGGGTTGACGTACGAACCAACGTTGATGTAAA TATGTGGCTCTCCAGTAATTAAAAAGCTGGGGAACACTTTTTAATCGTGC CATATCATTGATCTGACCAACTCCTAGTACCTTTCGGTGAGGGAAGTCTG CGATGCCGAACAACGGCATTTCGACTCATAAAGCTTTCCTCGCGCGACTC GTTATATCTTCTCATGATCAGGTACGTGGTTTCTGTGCCGACAAGTCAAA CCCGGAGGTATTCGACGACGTGAACGTGTACGGCAACATATACGACTCGG ACATTCACCACAACTACTTCGGTGTATACACATACGGTGCGTTTAACTGC CTGACTGAGAGGGGTGCTCTTGGTAGATGGGTTGTGTGGAGCCGAATCCT CACGGTGCACAGAAGAACCTTCCCCTAAAAACGTGGTTCTAATTACAAGA GGCCTCCTGGATCAAGCCTGGTGGCGACACAAAATTAGAAAGTTGCAGTT GTGCGTGCCGTACAGTGCGATTTAGCACAGGCATTGTTCATGCGTCCGTC GGATCCACCTAACTAAGTTGTGGGTATATCATTCGTTTCTTGTGCAGGTC ACCAGCAAGGTGACTGGCGCCGCAACAAGATGCACCACAACATTCAGTAC GGTTTCGACCCCCATGACGACAGCGACTACCTCAACATTCACGACAACGA GGTGTGGCGCAACGGGAACCACGGCATCATCGCGTCGAAACGCTGCAACC ACGTCTCCATCCAAAACAATGAGGTGTACGATGGTGGCCAGGCGGGATTG TTCCTCCACCGTAGCACCGACCACGCCACCGTAATCGGAAACTATGTTCA CGGCAACGCTGATGCTGGTCTAGCATTGCTTGAGTCGTTCAATGCCGACG TGAGCGACAATGTATTCCAGGACAACACGTATGGTATTAGGATGTCCGTC GGCTCTGCCAACAACATGTTCAGCTACAATGACATCCTAGATTCCGTCAA GTGAGTTCATGTCAATATCTGACTTTGTTGATAGTGATGGTGTAAATTTG TTGAACCCTCACCGTGCCGGTTTCTGAAAAGAACAGGCAATTATAGCCCC TCAGCGAGCCTGCCTCCAAAGGGGAGGGGTCACGAAACAAGCACGTAACC CCCAATCCTGAGCGATTGCCTTCGCGGAGGCATCGGGTGTGTGTGGAAGA GATGTGCAGAGAATCATTTTTATAGACGGAATTAAAGACTGGCTACCATT GGGGTTCATTTCTGAATGCATCCCGTGTTCAGAGAAGGAGAGGTGTTTGT TCGAGACGAGACGGTTGTTTCGCACAAGTTGATTCAATGTCACAGACGCC ACTTGTTCAACTGTATCAGATTCAGTGGAAATATCCATTAAACAAATATT CAAACTTTTGCTTTTCAAATGATCCCTTTAACTTCAGGTACAACTGCTAT ACCTACATGGGTACGGACCTGCCCTATGTCGCAGCCACTGGCCGTGTGTT GAACAACAAGTTTGTGGGCAACACCTTATCGGGTGGACGGGAAACGATTA AATTGAAGGAATCCAGTGGTACTCTCTTCGAAAACAACTCCTTTACAGAT GCCACTGTTATTCGGCTTGATGACGCGGATGCGATTATGAAGAATAACAC GGGCCTCCGAGGTGTGGAAATGAAGACAGTGGCTGGTGGCTGCTTTGACT TGAATTCTGACCCGGGCTTTAGGCCTACGTGTGCCCAACCTTCAGTTTAG CCGTTATCTGTTGAGGCGATCAGATTCATCGCCTCGTTTAGCCGAGGGTC TGCTGTCACGCTCCAAGCTCCCTTGAGAGAAAATTTGTGTTTTTATGCGC GCATCACTCCCTTGGGAATGGGCACATGAATTTTTGACTATGATATCGTG GTACTTCGGCTTATACTGATACGAGGTTTGTATGGTCGATGTAGTTCTCC CAGTCAAGGAGGCACCTACTCTTTGCCCGCGCAAGGATGGTCAGCATCAA CCGGGTCAAGATTTTTATTTATGGAATGTCAACATTTGTAACCTAGGGCC GTTCTAGTTTTCCAGTGTGGTTAAGTAGTGTACCGTTGAGGGAAAGTGTC GTGTAAGTGGTAAATAGTTGAAACTTTGTCCGTAAATGTAGGGTGTCGTC ATAGTTGTAGGTGTGATTCCTTGCACGTAGGAAATGGTCGTGTCACCACG AGTATTGCTTACGGGGGGAGTTCAGCTTCGAGTGAAGAATACTGGTTTGA ACGTTGCAAGGGCATGGAAGAAGATGGTATGGTCCAATATTTGTGATGGT TTTATTTCGAAGACGGTCGTCGGAGTGTTGTACCCCATTATGCATAGTAT TAAAATATGTGCATGTGTTACACCTGTGTTGAATCAGGCATATAGAGATG AATTTTATAGATCAGCTTTGGATAATGTTGTAATACTTCCACTTTTTTAT GCAAGTAGTGGTCAAAAGGGAGAGTTGTCGTAACGAACGGCACCGTATCA TTTTTATACAGTATCCATCTTTAGGGTCTCTGAAATTGCAAGGGTTTGCA ATTGTGTAACAGTCATATAATCTGATGTGTACAAGTAATTTGATCATTTT TTGAGACCATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5067:8546..13957+

>mRNA_H-paniculata_contig5067.12338.1 ID=mRNA_H-paniculata_contig5067.12338.1|Name=mRNA_H-paniculata_contig5067.12338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2964bp|location=Sequence derived from alignment at H-paniculata_contig5067:8546..13957+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGTTCAAGCGATCCATTGCTGTGCTGGGCGCATTTGCTCTTGCCCC
GGCCGCGGTGGCCAAGAACAGACCAATCCCACAGCCTGCATGTGACGGAA
CAAAATCGGTGGACATCCGATACTCTGGGGCCTCCAAGCGTTTGTATGTG
GAGGGAGCAGGGGGAGTGCGAGGTGGTTGCGTGACCTTATCTCAAATATA
CGAAACGCGAGTGGGGAAGCCACCTTTATACCCTGTGAATCCGGTGTCCG
GAGCGAGAACAACCAATGTGACAGGGACTTGGCTTCTCACCGAGAGCCTT
CACGTCGAGGACGGCATCACCCTTAACATGGCGTTCAAGCGATCCATTGC
TGTGCTGGGCGCATTTGCTCTTGCCCCGGCCGCGGTGGCCAAGAACAGAC
CAATCCCACAGCCTGCATGTGACGGAACAAAATCGGTGGACATCCGATAC
TCTGGGGCCTCCAAGCGTTTGTATGTGGAGGGAGCAGGGGGAGTGCGAGG
TGGTTGCGTGACCTTATCTCAAATATACGAAACGCGAGTGGGGAAGCCAC
CTTTATACCCTGTGAATCCGGTGTCCGGAGCGAGAACAACCAATGTGACA
GGGACTTGGCTTCTCACCGAGAGCCTTCACGTCGAGGACGGCATCACCCT
TAACGTGCATGGTGGTTCGACCGGAGATGCTGACGAACTTCGACTTCTTT
CCAACGCTGATGGCTTCATTGAATTTAGGGCACACGGTGCGAGCTTGAGC
TTTCGTGACACCAAGGTGCATGGTGGTTCGACCGGAGATGCTGACGAACT
TCGACTTCTTTCCAACGCTGATGGCTTCATTGAATTTAGGGCACACGGTG
CGAGCTTGAGCTTTCGTGACACCAAGGTCGTCTCGTGGGATGAGACGGCC
GGAGATTACGACAGAAATGTAACAGATGGACGATCCTTCATAACTGTCAT
CTCGGAAGTGATGACGGACAATCGAACTTGCGTGGGGATGGCGATGAAAA
GTATGGGGGAGGCACGCATGGATATCGTGAAAAGTGAAATGGGGTTCCTT
GGATACTACGATTCGGAATCGTATGGACTCACGTGGAAGGTCGTCTCGTG
GGATGAGACGGCCGGAGATTACGACAGAAATGTAACAGATGGACGATCCT
TCATAACTGTCATCTCGGAAGTGATGACGGACAATCGAACTTGCGTGGGG
ATGGCGATGAAAAGTATGGGGGAGGCACGCATGGATATCGTGAAAAGTGA
AATGGGGTTCCTTGGATACTACGATTCGGAATCGTATGGACTCACGTGGA
AGGTACGTGGTTTCTGTGCCGACAAGTCAAACCCGGAGGTATTCGACGAC
GTGAACGTGTACGGCAACATATACGACTCGGACATTCACCACAACTACTT
CGGTGTATACACATACGGTACGTGGTTTCTGTGCCGACAAGTCAAACCCG
GAGGTATTCGACGACGTGAACGTGTACGGCAACATATACGACTCGGACAT
TCACCACAACTACTTCGGTGTATACACATACGGTCACCAGCAAGGTGACT
GGCGCCGCAACAAGATGCACCACAACATTCAGTACGGTTTCGACCCCCAT
GACGACAGCGACTACCTCAACATTCACGACAACGAGGTGTGGCGCAACGG
GAACCACGGCATCATCGCGTCGAAACGCTGCAACCACGTCTCCATCCAAA
ACAATGAGGTGTACGATGGTGGCCAGGCGGGATTGTTCCTCCACCGTAGC
ACCGACCACGCCACCGTAATCGGAAACTATGTTCACGGCAACGCTGATGC
TGGTCTAGCATTGCTTGAGTCGTTCAATGCCGACGTGAGCGACAATGTAT
TCCAGGACAACACGTATGGTATTAGGATGTCCGTCGGCTCTGCCAACAAC
ATGTTCAGCTACAATGACATCCTAGATTCCGTCAAGTCACCAGCAAGGTG
ACTGGCGCCGCAACAAGATGCACCACAACATTCAGTACGGTTTCGACCCC
CATGACGACAGCGACTACCTCAACATTCACGACAACGAGGTGTGGCGCAA
CGGGAACCACGGCATCATCGCGTCGAAACGCTGCAACCACGTCTCCATCC
AAAACAATGAGGTGTACGATGGTGGCCAGGCGGGATTGTTCCTCCACCGT
AGCACCGACCACGCCACCGTAATCGGAAACTATGTTCACGGCAACGCTGA
TGCTGGTCTAGCATTGCTTGAGTCGTTCAATGCCGACGTGAGCGACAATG
TATTCCAGGACAACACGTATGGTATTAGGATGTCCGTCGGCTCTGCCAAC
AACATGTTCAGCTACAATGACATCCTAGATTCCGTCAAGTACAACTGCTA
TACCTACATGGGTACGGACCTGCCCTATGTCGCAGCCACTGGCCGTGTGT
TGAACAACAAGTTTGTGGGCAACACCTTATCGGGTGGACGGGAAACGATT
AAATTGAAGGAATCCAGTGGTACTCTCTTCGAAAACAACTCCTTTACAGA
TGCCACTGTTATTCGGCTTGATGACGCGGATGCGATTATGAAGAATAACA
CGGGCCTCCGAGGTGTGGAAATGAAGACAGTGGCTGGTGGCTGCTTTGAC
TTGAATTCTGACCCGGGCTTTAGGCCTACGTGTGCCCAACCTTCAGTTTA
GGTACAACTGCTATACCTACATGGGTACGGACCTGCCCTATGTCGCAGCC
ACTGGCCGTGTGTTGAACAACAAGTTTGTGGGCAACACCTTATCGGGTGG
ACGGGAAACGATTAAATTGAAGGAATCCAGTGGTACTCTCTTCGAAAACA
ACTCCTTTACAGATGCCACTGTTATTCGGCTTGATGACGCGGATGCGATT
ATGAAGAATAACACGGGCCTCCGAGGTGTGGAAATGAAGACAGTGGCTGG
TGGCTGCTTTGACTTGAATTCTGACCCGGGCTTTAGGCCTACGTGTGCCC
AACCTTCAGTTTAG
back to top