mRNA_H-paniculata_contig5062.12333.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5062.12333.1
Unique NamemRNA_H-paniculata_contig5062.12333.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5062.12333.1 vs. uniprot
Match: D7FX95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX95_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.250e-44
Identity = 81/105 (77.14%), Postives = 90/105 (85.71%), Query Frame = 3 
Query:  249 KQYHTPLAVGTLLGMTTMMSQFMFVLFAVFLALAEYADTNALARNDRAMAVFAFFLFLLYGLFSFVLGRYRTTVMNSPGVSSQKEVDGEWQEEEGTDNV--NTPV 557
            K+YHTPLAVGTLLG+TTMMSQFMFVLFAVFLALAEYAD   LA  DR MAVF+FFLFLLYGLFSFVLGRYRTTVMN+PG +S  + +GEWQ+E GTD +   TPV
Sbjct:   83 KKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYADEPGLATGDRTMAVFSFFLFLLYGLFSFVLGRYRTTVMNTPGTASSND-EGEWQDEPGTDGMAPGTPV 186
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BLAST of mRNA_H-paniculata_contig5062.12333.1 vs. uniprot
Match: A0A835Z9F7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9F7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.750e-16
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 3 
Query:  249 KQYHTPLAVGTLLGMTTMMSQFMFVLFAVFLALAEYADTNALARNDRAMAVFAFFLFLLYGLFSFVLGRYRTTVMNS 479
            ++YHTPLAVG LLG+T+M+SQ +FVLFAVFLAL + + T+    +D AMA F F LF L+ LFS VL ++R TV+ +
Sbjct:   86 RKYHTPLAVGLLLGLTSMLSQLLFVLFAVFLALGQESGTHQ--DSDHAMAAFMFILFFLFLLFSIVLAKFRMTVIET 160
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BLAST of mRNA_H-paniculata_contig5062.12333.1 vs. uniprot
Match: W7TD56_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD56_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.480e-9
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 3 
Query:  243 TEKQYHTPLAVGTLLGMTTMMSQFMFVLFAVFLALAEYADTNALARNDRAMAVFAFFLFLLYGLFSFVLGRYRTTVMN 476
            T K+  TP+A G  LG   M SQ   +LFA+F+ LA+ +  +   R++ AMAVFAFFLF+LY +FS  L  +R  V++
Sbjct:  101 TMKRLKTPIATGVFLGACIMYSQMQLLLFAIFVGLAQTSSGDVERRSNNAMAVFAFFLFILYTVFSVCLYFFRHYVID 178
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BLAST of mRNA_H-paniculata_contig5062.12333.1 vs. uniprot
Match: A0A482RX29_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX29_9ARCH)

HSP 1 Score: 55.5 bits (132), Expect = 1.510e-6
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 3 
Query:  249 KQYHTPLAVGTLLGMTTMMSQFMFVLFAVFLALAEYA-DTNALARNDRAMAVFAFFLFLLYGLFSFVLGRYRTTVM 473
            ++Y T L++G L+G+  +M+Q M +LFAVF   A  + +T    ++  AMAVFAFFLFL+Y  F  +L  +R  V+
Sbjct:   33 RRYQTALSIGFLIGIIFIMTQQMLILFAVFADQANNSGNTLVETQSQEAMAVFAFFLFLVYAAFGSMLSVFRQDVI 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5062.12333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FX95_ECTSI1.250e-4477.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9F7_9STRA2.750e-1655.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TD56_9STRA2.480e-944.87Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A482RX29_9ARCH1.510e-642.11Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5062contigH-paniculata_contig5062:9940..13135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.5
Seed ortholog evalue1.4e-34
Seed eggNOG ortholog2880.D7FX95
Hectar predicted targeting categorysignal anchor
EggNOG OGs2B4VH@1,2S0HS@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_004050.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size561
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5062.12333.1prot_H-paniculata_contig5062.12333.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5062 10080..13134 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930486.7703812-UTR-H-paniculata_contig5062:9939..100791622930486.7703812-UTR-H-paniculata_contig5062:9939..10079Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5062 9940..10079 +
1691481314.1064763-UTR-H-paniculata_contig5062:9939..100791691481314.1064763-UTR-H-paniculata_contig5062:9939..10079Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5062 9940..10079 +
1622930486.836455-UTR-H-paniculata_contig5062:13134..131351622930486.836455-UTR-H-paniculata_contig5062:13134..13135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5062 13135..13135 +
1691481314.1449404-UTR-H-paniculata_contig5062:13134..131351691481314.1449404-UTR-H-paniculata_contig5062:13134..13135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5062 13135..13135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930486.784015-CDS-H-paniculata_contig5062:10079..103671622930486.784015-CDS-H-paniculata_contig5062:10079..10367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5062 10080..10367 +
1691481314.1169658-CDS-H-paniculata_contig5062:10079..103671691481314.1169658-CDS-H-paniculata_contig5062:10079..10367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5062 10080..10367 +
1622930486.80089-CDS-H-paniculata_contig5062:11054..111091622930486.80089-CDS-H-paniculata_contig5062:11054..11109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5062 11055..11109 +
1691481314.1276655-CDS-H-paniculata_contig5062:11054..111091691481314.1276655-CDS-H-paniculata_contig5062:11054..11109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5062 11055..11109 +
1622930486.817035-CDS-H-paniculata_contig5062:13057..131341622930486.817035-CDS-H-paniculata_contig5062:13057..13134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5062 13058..13134 +
1691481314.1359649-CDS-H-paniculata_contig5062:13057..131341691481314.1359649-CDS-H-paniculata_contig5062:13057..13134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5062 13058..13134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5062.12333.1

>prot_H-paniculata_contig5062.12333.1 ID=prot_H-paniculata_contig5062.12333.1|Name=mRNA_H-paniculata_contig5062.12333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MWFGAVRCGAVRCGAVRCGAGFKNWALGTCEIIATEKQYHTPLAVGTLLG
MTTMMSQFMFVLFAVFLALAEYADTNALARNDRAMAVFAFFLFLLYGLFS
FVLGRYRTTVMNSPGVSSQKEVDGEWQEEEGTDNVNTPV*
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mRNA from alignment at H-paniculata_contig5062:9940..13135+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5062.12333.1 ID=mRNA_H-paniculata_contig5062.12333.1|Name=mRNA_H-paniculata_contig5062.12333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3196bp|location=Sequence derived from alignment at H-paniculata_contig5062:9940..13135+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTCGGCAAAAGAAACAAACTTTTATGCTTTTTCACAACTGATGCTTCC
GTTTTCCCTTGTTTTTATTTTTCCCCTTTGCTCGGGGTCAATCTCTGGAT
CTGGGTGGATGAACGGGATGGTCTGGTCTGGTCTGATCCAATGTGGTTCG
GTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCG
GGTTTTAAAAACTGGGCGCTGGGCACGTGCGAAATTATTGCAACGGAAAA
ACAGTACCACACACCGTTGGCAGTCGGCACTCTGCTGGGCATGACGACGA
TGATGTCGCAGTTCATGTTTGTGCTGTTCGCCGTGTTCCTGGCCTTGGCG
GAATACGCGGACACGAACGCGCTGGCGAGGAATGACAGAGCCATGGCGGT
CTTCGCCTTCTTCCTGTTCCTACTCTACGTGAGTGTTGCCGTTGGCACGC
GTAGGAGCAGAGCGGCGCGGGTGGGCGGGGTGAAGTAGTGGGTGGGGTCG
AGAGTGGGAGATGTAGATCGAAAATATCACAACGGCGACAAACTAAAATC
GTACCTTACGCTTAGTTCAACGTTGAATACTGCTGAATGAATGATTCCAT
GAACCGAGTTAGGGGGGAGGAAGATGTAACTATAATGAAGGCTTTGTTTT
GATTATATTGTTATCCGTTCTCTGATTGCGCTTTCCTATGATGCTAAACG
TGGCTCAGGGAGAGGGGATATAGTGACGTAGGGCTGGGCACTGAAGCTAG
TGGGCATACTTGCTGAGCAAGAAAAATATGACTAGGCCTTGGCATTTGTT
CATTTTTTTCGTTAGCCTGCATATTATCCATTTTTTTTGTCGTGAATCAA
CCATAGGATGATCGTTTTTATTTGAATGAAGATTGGCTATTGACCTCCCA
GTGTAGAGGTCTTGTTTGTGTCGCGGTCGAAGGCTAAATCCCTTGTCCAA
CTCCGGGTATATATATATACATATGTCGACTTTGTGACCTTTGTACTTGC
GGTGCGTCGGGCATGTTTCATTTCCATGCTGTTACCGTCCGCTTTGCTTC
TCTCCCTATTCTCTCTGATACGTATTGATTTTATTACTGTCATGTCGTGT
TCCATCCATATCCAGGGTCTTTTCTCCTTCGTGCTTGGCCGGTACCGCAC
CACCGTGATGAACTCTCCCGGTAAGTTTTTATTTACCTCAATGACAAAAC
AAAACAAAAAGTGGCTATAAGTTAGGGAGGAAATATTTGGAGTAAGAGCA
ACCACGAGTTTTGCCAGACCTGCTCAAGTGGTCGGTCATGGCAGAAATGA
ACCTCATGTTTGCATCGTTCTTTGCACGAAGCAAAGAGTGCCGGAATCCG
GATATTATCACGATGTTTGACTTTCGACAATTTGCAGACTCGGACTTGGC
TGTTGGCTAGAAGGGTGATCGCATGCGAGAAACAACGTCCTCGAACGATT
TCACAGACGGCACATTATGGAGTCTTATCGGTAGCCCATCAAATAGATAT
TCCTCATTATAATATAAAATCGACGATACCTATAGTGACCTTTTATTGTC
CGGTCCAGCGAAGAAACAGACCAGAGCTATGAGTTGCTTATCGCCAAACT
TACCTGAGCAAGAAGGCCGCTGAACTCCAGAGTTATACTTCTGAATGTAT
TTATTCTCACTCGGTGGACAAGGGTCGTTGACGTTTCTTCACACTCTCCA
TGACTGATTACGGATGTTGCTACGCGCATGGGAAAGGTTCCATGATGATC
GTCTCCAATCATCCCCACAACATCGCACAGCACACACCCGCCACACAGCG
TACATATGTTACACCGCCGATAACGCCGATCTAGAAACGCGATTGCCATT
TTGAGCTGCTGCTGCAACGGTTCTATTTGACCGCGGTTGTTCCTAGTGGC
GATTGCTGAGGTGATGATCTATTTCTCCGACACGTCGAAGCACGCTTCTT
GGAAGCGGTCGATTACAGCCATGTGTAGGTATCATGTTCGATTTTGAGAA
CTAAAAGAAGGGACCGCAGCCCACCCTCAGAAGTAAAAAATAAAGCGCGT
ACCCTGGCATCTCGTGGAGTAATATATATGGAATACGTCTTTCCCTCCCT
TACGTGACTGTCCTATTTGTTCCTGTTCGTAATCTTTCTCTTGGCCTCGC
TCACAGCTGGTGCGTTGGATTTTTCCTCGTTCCTTTCTTGAGCCAACGTT
ACCGTATAAAAAAAAACAGTTTACCTCTCAAGAAAAGTCACTATAAGACG
ATTTAGGAGTAAAAAAGTTGCGTTGTATTATAAAATTCACTTGTATTTTC
TTTGTAGGTTTGTTTCTGTGGCTAGAGAGGGGAAAGGTAAATCGGGAAAA
CGTGGATGAATCATGTATGCATACATGAAGGTGTTTGAGAAGTGAGAAAT
TAAATAAGACACACTACTTGGAACCAATTTTCACCTTTTTGTTCAAAATA
CGGAAGATTTTGGTAGATGAGCTCTCGCTTGTCATGTTTTTTTCTTGCTG
GCAGTGACCAACCGCAGCTATACACGACGATTGTATGGTGGACTTTATGA
CTTTCCATTTCTGGTGGACGCCTTTTCCCTCAAGAGTGGTATGGAGGCTT
GGAAGGGTGACAAGTAGGCAGAGTACGTCTTGTAGAGTTTGAGGAATCCC
GAAACAGAAAAACAGGTGGACTGGTGAGCAAGAACTCGCAAATTCAGTTA
TGTTGTACCAAATATTCGAAAATAATGGTTGACTGTATGATACAATCTAA
GCACCCATGCGAGAGTCATCATGGGGGTGAACGACCTGGTGCGTGCATAG
CGTGCTTTTTTCATTCTGAAGTCGGCGCCGAGAGCTTCGATTTCAGCTCT
GCCAACGCGTACTATGGTAGCGATAGGGTTACCGTTAGCCCCAACAATTG
TTGTGTTCACATAGGTGTAACACAAAACGTAAACCATGAGAAAATACGAG
TGTCAGTCAGTCTTCACTTCTCGGTGAACAGGCCTCAGCAAGTTAGACGT
GTATTTAATATATCCTTCGTTTCCCCTCGCCCGGTCCCCCCTCCCCGCCC
TTCCCCCTGTTTCACCATGACGTATGTCGTCATTTTCCTCCCGTTACCTC
TGAACACTGGGCTATCAGGAGTGTCCTCGCAAAAGGAAGTTGACGGCGAA
TGGCAGGAGGAGGAAGGGACAGACAACGTCAACACCCCCGTCTAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5062:9940..13135+

>mRNA_H-paniculata_contig5062.12333.1 ID=mRNA_H-paniculata_contig5062.12333.1|Name=mRNA_H-paniculata_contig5062.12333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig5062:9940..13135+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGTTCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCG
GTGCGGTGCGGGTTTTAAAAACTGGGCGCTGGGCACGTGCGAAATTATTG
CAACGGAAAAACAGTACCACACACCGTTGGCAGTCGGCACTCTGCTGGGC
ATGACGACGATGATGTCGCAGTTCATGTTTGTGCTGTTCGCCGTGTTCCT
GGCCTTGGCGGAATACGCGGACACGAACGCGCTGGCGAGGAATGACAGAG
CCATGGCGGTCTTCGCCTTCTTCCTGTTCCTACTCTACATGTGGTTCGGT
GCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGG
TTTTAAAAACTGGGCGCTGGGCACGTGCGAAATTATTGCAACGGAAAAAC
AGTACCACACACCGTTGGCAGTCGGCACTCTGCTGGGCATGACGACGATG
ATGTCGCAGTTCATGTTTGTGCTGTTCGCCGTGTTCCTGGCCTTGGCGGA
ATACGCGGACACGAACGCGCTGGCGAGGAATGACAGAGCCATGGCGGTCT
TCGCCTTCTTCCTGTTCCTACTCTACGGTCTTTTCTCCTTCGTGCTTGGC
CGGTACCGCACCACCGTGATGAACTCTCCCGGGTCTTTTCTCCTTCGTGC
TTGGCCGGTACCGCACCACCGTGATGAACTCTCCCGGAGTGTCCTCGCAA
AAGGAAGTTGACGGCGAATGGCAGGAGGAGGAAGGGACAGACAACGTCAA
CACCCCCGTCTAAGAGTGTCCTCGCAAAAGGAAGTTGACGGCGAATGGCA
GGAGGAGGAAGGGACAGACAACGTCAACACCCCCGTCTAA
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