mRNA_H-paniculata_contig5060.12331.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5060.12331.1 vs. uniprot
Match: A0A6H5KXM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM5_9PHAE) HSP 1 Score: 110 bits (275), Expect = 3.710e-21 Identity = 174/207 (84.06%), Postives = 183/207 (88.41%), Query Frame = 2
Query: 1682 SNETGQRERP--VQGCRDMGCRRRPLYAFKGARKAVRCPLHRLQDMVNVRHPLCQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYAMTGQRXXXXXXXXXXXXXXXXXXXXXYEEGCNRHPSFGWKKIDGKARRCAHHRLEGMESVKVHRR 2296
S ETG P Q CRD+GC RRP+YAFKG KA+ CP+HR +MVNVRHPL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYAM GQR XXXXXXXXXXXXXXXXXXX+E GC+RHPSFGWK+ DGKARRCAHHRLEGMESVKV+ R
Sbjct: 601 SKETGTTVAPKGAQACRDVGCHRRPIYAFKGDTKALCCPIHRSAEMVNVRHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYAMAGQRAMXXXXXXXXXXXXXXXXXXXFEGGCDRHPSFGWKQGDGKARRCAHHRLEGMESVKVNNR 807
BLAST of mRNA_H-paniculata_contig5060.12331.1 vs. uniprot
Match: D8LBV0_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV0_ECTSI) HSP 1 Score: 79.0 bits (193), Expect = 1.590e-13 Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 2
Query: 2093 LYAMTGQRXXXXXXXXXXXXXXXXXXXXXYEEGCNRHPSFGWKKIDGKARRCAHHRLEGMESVKVHRR 2296
LYAM GQR XXXXXXXXXXXXXXXXXXX+E GC+RHPSFGWK+ DGKARRCAHHRLEGMESVKV+ R
Sbjct: 57 LYAMAGQRAMXXXXXXXXXXXXXXXXXXXFEGGCDRHPSFGWKQGDGKARRCAHHRLEGMESVKVNNR 124
BLAST of mRNA_H-paniculata_contig5060.12331.1 vs. uniprot
Match: D8LBU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBU9_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 7.940e-10 Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 2
Query: 1682 SNETGQRERP--VQGCRDMGCRRRPLYAFKGARKAVRCPLHRLQDMVNVRHPLCQN 1843
S ETG P Q CRD+GC RRP+YAFKG KA+ CP+HR +MVNVRHPLC++
Sbjct: 443 SKETGTTVAPKGAQACRDVGCHRRPIYAFKGDTKALCCPIHRSAEMVNVRHPLCRH 498 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5060.12331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5060.12331.1 >prot_H-paniculata_contig5060.12331.1 ID=prot_H-paniculata_contig5060.12331.1|Name=mRNA_H-paniculata_contig5060.12331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=619bp MELARERLRDIMIIIADADQTSSGNRCTLAGRKLETAGATAPRWYLERLLback to top mRNA from alignment at H-paniculata_contig5060:1454..13634+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5060.12331.1 ID=mRNA_H-paniculata_contig5060.12331.1|Name=mRNA_H-paniculata_contig5060.12331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12181bp|location=Sequence derived from alignment at H-paniculata_contig5060:1454..13634+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5060:1454..13634+ >mRNA_H-paniculata_contig5060.12331.1 ID=mRNA_H-paniculata_contig5060.12331.1|Name=mRNA_H-paniculata_contig5060.12331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3714bp|location=Sequence derived from alignment at H-paniculata_contig5060:1454..13634+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |