mRNA_H-paniculata_contig5056.12321.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5056.12321.1
Unique NamemRNA_H-paniculata_contig5056.12321.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5056.12321.1 vs. uniprot
Match: A0A6H5JZ54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ54_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 4.160e-5
Identity = 21/40 (52.50%), Postives = 31/40 (77.50%), Query Frame = 3 
Query:  141 RKKCSNQGCSTRPRYGMAGTRKAEFCARHAEKGMVDVLNK 260
            ++ C   GC+TRP YG A ++KAEFC++H E+GM+DV +K
Sbjct:   26 QRSCREHGCTTRPSYGRAHSKKAEFCSQHRERGMIDVRSK 65
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BLAST of mRNA_H-paniculata_contig5056.12321.1 vs. uniprot
Match: D8LCH9_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH9_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 7.330e-5
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 3 
Query:  144 KKCSNQGCSTRPRYGMAGTRKAEFCARHAEKGMVDV 251
            K C + GC+TR  +G+ G++KAEFC+RHAE GMVD+
Sbjct:    7 KTCDHVGCTTRANFGVPGSKKAEFCSRHAEDGMVDL 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5056.12321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZ54_9PHAE4.160e-552.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCH9_ECTSI7.330e-558.33EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5056contigH-paniculata_contig5056:11783..12366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size586
Cds size456
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930484.6645758-UTR-H-paniculata_contig5056:11782..119101622930484.6645758-UTR-H-paniculata_contig5056:11782..11910Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5056 11783..11910 +
1691481312.954671-UTR-H-paniculata_contig5056:11782..119101691481312.954671-UTR-H-paniculata_contig5056:11782..11910Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5056 11783..11910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930484.682021-CDS-H-paniculata_contig5056:11910..123661622930484.682021-CDS-H-paniculata_contig5056:11910..12366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5056 11911..12366 +
1691481312.9645634-CDS-H-paniculata_contig5056:11910..123661691481312.9645634-CDS-H-paniculata_contig5056:11910..12366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5056 11911..12366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5056.12321.1prot_H-paniculata_contig5056.12321.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5056 11911..12366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5056.12321.1

>prot_H-paniculata_contig5056.12321.1 ID=prot_H-paniculata_contig5056.12321.1|Name=mRNA_H-paniculata_contig5056.12321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MPFQRKKCSNQGCSTRPRYGMAGTRKAEFCARHAEKGMVDVLNKTCSHQG
CSTFPSNEVAGTRKAEFCARHAEKGMVDVVNKTCSHQGCSTQPRYGVAGT
RKAEVCARHAEKGMVNVLNKTCSYQGCSTQPVYGEAGMRKAEFCARHAEK
GM
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mRNA from alignment at H-paniculata_contig5056:11783..12366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5056.12321.1 ID=mRNA_H-paniculata_contig5056.12321.1|Name=mRNA_H-paniculata_contig5056.12321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=584bp|location=Sequence derived from alignment at H-paniculata_contig5056:11783..12366+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTACGACGATTCAAATTGTACGCGAGGATACGGTGCGGCAGGCCCAGAT
GGTGCTGTAGTCACGCCCGTCGCTCCTGTCCTGAGTAGCACTTGAGAGGC
GAAATTGTGTGTTTCGGATTGGAAGACCATGCCATTCCAACGGAAAAAGT
GTTCTAACCAGGGCTGCTCTACACGACCGAGGTATGGGATGGCTGGCACG
AGAAAGGCAGAGTTCTGTGCGCGGCATGCCGAAAAGGGAATGGTTGACGT
CCTGAACAAAACGTGCTCCCACCAGGGCTGCTCTACATTCCCGTCGAATG
AGGTGGCGGGCACGAGAAAGGCAGAGTTCTGTGCGCGGCATGCCGAAAAG
GGAATGGTTGACGTCGTGAACAAAACGTGCTCCCACCAGGGCTGCTCTAC
ACAACCGAGGTATGGGGTGGCGGGCACGAGAAAGGCAGAGGTCTGTGCGC
GGCATGCCGAAAAGGGAATGGTTAACGTCCTGAACAAAACGTGCTCCTAC
CAGGGCTGCTCTACACAACCGGTGTATGGGGAGGCGGGCATGAGAAAGGC
AGAGTTCTGTGCGCGGCATGCCGAAAAGGGAATG
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Coding sequence (CDS) from alignment at H-paniculata_contig5056:11783..12366+

>mRNA_H-paniculata_contig5056.12321.1 ID=mRNA_H-paniculata_contig5056.12321.1|Name=mRNA_H-paniculata_contig5056.12321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig5056:11783..12366+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCATTCCAACGGAAAAAGTGTTCTAACCAGGGCTGCTCTACACGACC
GAGGTATGGGATGGCTGGCACGAGAAAGGCAGAGTTCTGTGCGCGGCATG
CCGAAAAGGGAATGGTTGACGTCCTGAACAAAACGTGCTCCCACCAGGGC
TGCTCTACATTCCCGTCGAATGAGGTGGCGGGCACGAGAAAGGCAGAGTT
CTGTGCGCGGCATGCCGAAAAGGGAATGGTTGACGTCGTGAACAAAACGT
GCTCCCACCAGGGCTGCTCTACACAACCGAGGTATGGGGTGGCGGGCACG
AGAAAGGCAGAGGTCTGTGCGCGGCATGCCGAAAAGGGAATGGTTAACGT
CCTGAACAAAACGTGCTCCTACCAGGGCTGCTCTACACAACCGGTGTATG
GGGAGGCGGGCATGAGAAAGGCAGAGTTCTGTGCGCGGCATGCCGAAAAG
GGAATGATGCCATTCCAACGGAAAAAGTGTTCTAACCAGGGCTGCTCTAC
ACGACCGAGGTATGGGATGGCTGGCACGAGAAAGGCAGAGTTCTGTGCGC
GGCATGCCGAAAAGGGAATGGTTGACGTCCTGAACAAAACGTGCTCCCAC
CAGGGCTGCTCTACATTCCCGTCGAATGAGGTGGCGGGCACGAGAAAGGC
AGAGTTCTGTGCGCGGCATGCCGAAAAGGGAATGGTTGACGTCGTGAACA
AAACGTGCTCCCACCAGGGCTGCTCTACACAACCGAGGTATGGGGTGGCG
GGCACGAGAAAGGCAGAGGTCTGTGCGCGGCATGCCGAAAAGGGAATGGT
TAACGTCCTGAACAAAACGTGCTCCTACCAGGGCTGCTCTACACAACCGG
TGTATGGGGAGGCGGGCATGAGAAAGGCAGAGTTCTGTGCGCGGCATGCC
GAAAAGGGAATG
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