mRNA_H-paniculata_contig5054.12319.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5054.12319.1
Unique NamemRNA_H-paniculata_contig5054.12319.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5054.12319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5054contigH-paniculata_contig5054:4876..5364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size490
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930484.5616007-CDS-H-paniculata_contig5054:4875..52621622930484.5616007-CDS-H-paniculata_contig5054:4875..5262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5054 4876..5262 +
1691481312.910336-CDS-H-paniculata_contig5054:4875..52621691481312.910336-CDS-H-paniculata_contig5054:4875..5262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5054 4876..5262 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930484.576391-UTR-H-paniculata_contig5054:5262..53641622930484.576391-UTR-H-paniculata_contig5054:5262..5364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5054 5263..5364 +
1691481312.925078-UTR-H-paniculata_contig5054:5262..53641691481312.925078-UTR-H-paniculata_contig5054:5262..5364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5054 5263..5364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5054.12319.1prot_H-paniculata_contig5054.12319.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5054 4876..5262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5054.12319.1

>prot_H-paniculata_contig5054.12319.1 ID=prot_H-paniculata_contig5054.12319.1|Name=mRNA_H-paniculata_contig5054.12319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
RQYNQCTYIPVAQIDSPRHFDYVNKANEHQSRVDNPTATPGAAAEQETRD
EKGETTSSSALRTAKNKTRRAASTRRLAAAEEAQETKSAELAASQAYIRD
LEYRLEKVTSKDATSNVSEGPPQTLATP*
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mRNA from alignment at H-paniculata_contig5054:4876..5364+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5054.12319.1 ID=mRNA_H-paniculata_contig5054.12319.1|Name=mRNA_H-paniculata_contig5054.12319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=489bp|location=Sequence derived from alignment at H-paniculata_contig5054:4876..5364+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACAGTACAATCAGTGTACCTACATACCTGTTGCACAAATAGATTCTCC
GCGACATTTTGATTATGTCAACAAAGCGAACGAGCACCAATCCAGGGTCG
ATAACCCGACGGCGACTCCTGGAGCTGCGGCCGAGCAGGAGACACGTGAC
GAAAAAGGCGAGACCACGTCTTCCTCGGCGTTGAGGACGGCGAAGAATAA
GACTAGGCGAGCAGCCAGCACACGGCGGCTCGCGGCAGCTGAGGAAGCCC
AAGAGACGAAGAGCGCAGAACTTGCCGCTAGTCAAGCCTACATCCGTGAT
CTGGAATACCGTCTTGAAAAGGTCACCTCAAAAGACGCCACCAGTAACGT
GAGTGAGGGTCCACCCCAGACGCTCGCGACCCCATAGCGCAAATCCTCCG
CCAACGATAGCACTACCCTCGACTTCGCCTTGAACACCGGATTTTCGCAC
TTAGACAGCGACAACGACAACGACGATAACGAAGAGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig5054:4876..5364+

>mRNA_H-paniculata_contig5054.12319.1 ID=mRNA_H-paniculata_contig5054.12319.1|Name=mRNA_H-paniculata_contig5054.12319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig5054:4876..5364+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACAGTACAATCAGTGTACCTACATACCTGTTGCACAAATAGATTCTCC
GCGACATTTTGATTATGTCAACAAAGCGAACGAGCACCAATCCAGGGTCG
ATAACCCGACGGCGACTCCTGGAGCTGCGGCCGAGCAGGAGACACGTGAC
GAAAAAGGCGAGACCACGTCTTCCTCGGCGTTGAGGACGGCGAAGAATAA
GACTAGGCGAGCAGCCAGCACACGGCGGCTCGCGGCAGCTGAGGAAGCCC
AAGAGACGAAGAGCGCAGAACTTGCCGCTAGTCAAGCCTACATCCGTGAT
CTGGAATACCGTCTTGAAAAGGTCACCTCAAAAGACGCCACCAGTAACGT
GAGTGAGGGTCCACCCCAGACGCTCGCGACCCCATAGCGACAGTACAATC
AGTGTACCTACATACCTGTTGCACAAATAGATTCTCCGCGACATTTTGAT
TATGTCAACAAAGCGAACGAGCACCAATCCAGGGTCGATAACCCGACGGC
GACTCCTGGAGCTGCGGCCGAGCAGGAGACACGTGACGAAAAAGGCGAGA
CCACGTCTTCCTCGGCGTTGAGGACGGCGAAGAATAAGACTAGGCGAGCA
GCCAGCACACGGCGGCTCGCGGCAGCTGAGGAAGCCCAAGAGACGAAGAG
CGCAGAACTTGCCGCTAGTCAAGCCTACATCCGTGATCTGGAATACCGTC
TTGAAAAGGTCACCTCAAAAGACGCCACCAGTAACGTGAGTGAGGGTCCA
CCCCAGACGCTCGCGACCCCATAG
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