mRNA_H-paniculata_contig50525.12317.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50525.12317.1
Unique NamemRNA_H-paniculata_contig50525.12317.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig50525.12317.1 vs. uniprot
Match: A0A6H5KS88_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS88_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 5.840e-22
Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = -1 
Query:    1 VRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRF 357
            VRLNK++YGLKQA R + KRLV  L+  +G  QS SDPCV R      V  I+ +HVDD++ AG     + +  AL     T   GE++++LGCAF RD   G + I+Q +++ +V++RF
Sbjct:    6 VRLNKSLYGLKQASRTFYKRLVSDLLR-IGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIAEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIWSVLERF 124
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BLAST of mRNA_H-paniculata_contig50525.12317.1 vs. uniprot
Match: A0A6H5JE75_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE75_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.550e-21
Identity = 45/120 (37.50%), Postives = 75/120 (62.50%), Query Frame = -1 
Query:    1 VRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRF 357
            V++ +A+YGLKQ+GR W     + L+ N G  Q + DPCVFR   +G V  ++ ++VDD++VA    + + LFA+L  +F     GE  WY GCA   D+  G+ +++Q  ++++++KRF
Sbjct:    6 VKVERALYGLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRF 124
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BLAST of mRNA_H-paniculata_contig50525.12317.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.000e-21
Identity = 52/121 (42.98%), Postives = 79/121 (65.29%), Query Frame = -1 
Query:    1 VRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR--GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRF 357
            VRLNK++YGLKQA R + KRLV  L   +G  QS SDPCV R      V  ++ +HVDD++ AG +   + + AAL  +F  T+  GE++++LGCAF RD   G + ++Q +++ +V++RF
Sbjct:  124 VRLNKSLYGLKQASRTFYKRLVSEL-KRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTTSLAEVVVAAL-GDFLPTKSLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERF 242
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BLAST of mRNA_H-paniculata_contig50525.12317.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 4.780e-21
Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = -1 
Query:    1 VRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRF 357
            VRLNK++YGLKQA R +  RLV  L   +G  QS SDPCV R      V  ++ +HVDD++ AG     +++ AAL     T   GE+K++LGCAF RD   G + I+Q +++ +V++RF
Sbjct:  309 VRLNKSLYGLKQASRTFYMRLVSDL-KRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILYAGSKSLAETVVAALGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESYIRSVLERF 427
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BLAST of mRNA_H-paniculata_contig50525.12317.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.880e-21
Identity = 45/120 (37.50%), Postives = 74/120 (61.67%), Query Frame = -1 
Query:    1 VRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRF 357
            V++ +A+Y LKQ+GR W     + L+ N G  Q + DPCVFR   +G V  ++ ++VDD++VA    + + LFA+L  EF     GE  WY GCA   D+  G+ +++Q  ++D++++RF
Sbjct:    6 VKVERALYRLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKEFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIDSMLQRF 124
[Close]
BLAST of mRNA_H-paniculata_contig50525.12317.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 6.530e-21
Identity = 46/120 (38.33%), Postives = 75/120 (62.50%), Query Frame = -1 
Query:    1 VRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRF 357
            V++ +A+YGLKQ+GR W     + L+ N G  Q + DPCVFR   +G V  ++ ++VDD+IVA    + + LFA+L  +F     GE  WY GCA   D+  G+ +++Q  ++++++KRF
Sbjct:  355 VKVERALYGLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAADEGEREELFASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRF 473
[Close]
BLAST of mRNA_H-paniculata_contig50525.12317.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 6.560e-21
Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = -1 
Query:    1 VRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRF 357
            VRLNK++YGLKQA R + KRLV  L+  +G  QS SDPCV R      V  I+ +HVDD++ AG     + +  AL     T   GE++++LGCAF RD   G + I+Q +++ +V++RF
Sbjct:  355 VRLNKSLYGLKQASRTFYKRLVSDLLR-IGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERF 473
[Close]
BLAST of mRNA_H-paniculata_contig50525.12317.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 6.700e-21
Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = -1 
Query:    1 VRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRF 357
            VRLNK++YGLKQA R + KRLV  L+  +G  QS SDPCV R      V  I+ +HVDD++ AG     + +  AL     T   GE++++LGCAF RD   G + I+Q +++ +V++RF
Sbjct:  560 VRLNKSLYGLKQASRTFYKRLVSDLLR-IGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERF 678
[Close]
BLAST of mRNA_H-paniculata_contig50525.12317.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 6.740e-21
Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = -1 
Query:    1 VRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRF 357
            VRLNK++YGLKQA R + KRLV  L+  +G  QS SDPCV R      V  I+ +HVDD++ AG     + +  AL     T   GE++++LGCAF RD   G + I+Q +++ +V++RF
Sbjct:  624 VRLNKSLYGLKQASRTFYKRLVSDLLR-IGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERF 742
[Close]
BLAST of mRNA_H-paniculata_contig50525.12317.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 6.740e-21
Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = -1 
Query:    1 VRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRF 357
            VRLNK++YGLKQA R + KRLV  L+  +G  QS SDPCV R      V  I+ +HVDD++ AG     + +  AL     T   GE++++LGCAF RD   G + I+Q +++ +V++RF
Sbjct:  768 VRLNKSLYGLKQASRTFYKRLVSDLLR-IGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERF 886
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50525.12317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KS88_9PHAE5.840e-2243.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JE75_9PHAE1.550e-2137.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQD0_9PHAE3.000e-2142.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPV1_9PHAE4.780e-2143.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KW89_9PHAE5.880e-2137.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE6.530e-2138.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE6.560e-2143.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LDZ0_9PHAE6.700e-2143.33CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE6.740e-2143.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE6.740e-2143.33CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50525contigH-paniculata_contig50525:951..1307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size358
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930484.380352-CDS-H-paniculata_contig50525:950..12561622930484.380352-CDS-H-paniculata_contig50525:950..1256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50525 951..1256 +
1691481312.817825-CDS-H-paniculata_contig50525:950..12561691481312.817825-CDS-H-paniculata_contig50525:950..1256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50525 951..1256 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930484.396409-UTR-H-paniculata_contig50525:1256..13071622930484.396409-UTR-H-paniculata_contig50525:1256..1307Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50525 1257..1307 +
1691481312.8279543-UTR-H-paniculata_contig50525:1256..13071691481312.8279543-UTR-H-paniculata_contig50525:1256..1307Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50525 1257..1307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50525.12317.1prot_H-paniculata_contig50525.12317.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50525 951..1256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50525.12317.1

>prot_H-paniculata_contig50525.12317.1 ID=prot_H-paniculata_contig50525.12317.1|Name=mRNA_H-paniculata_contig50525.12317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
EAFNDSINECPLRDADNSPHYVTPKCTTQVPLEFASRGLELRPQRCKQRI
ALHTFTSNNYIIYMNTQNHIYHPIFLEPKHTRVRLGLRHADVVYEYFYKA
L*
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mRNA from alignment at H-paniculata_contig50525:951..1307+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50525.12317.1 ID=mRNA_H-paniculata_contig50525.12317.1|Name=mRNA_H-paniculata_contig50525.12317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=357bp|location=Sequence derived from alignment at H-paniculata_contig50525:951..1307+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCGTTTAACGACAGTATCAACGAATGTCCGTTGCGTGATGCGGACAA
CTCCCCTCACTATGTCACGCCAAAATGCACAACCCAGGTACCACTTGAGT
TCGCCTCTCGTGGTTTGGAACTCCGCCCTCAACGCTGCAAACAGAGAATC
GCACTTCACACTTTTACCAGCAACAATTACATCATCTACATGAACACACA
GAATCATATCTACCACCCCATTTTTCTCGAGCCTAAACACACAAGGGTCA
GACTTGGATTGCGTCATGCCGACGTTGTTTACGAGTACTTCTACAAGGCG
CTTTGACCACATCCGTCCTGCCTGCTTGAGCCCATACATAGCCTTATTCA
GCCTTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig50525:951..1307+

>mRNA_H-paniculata_contig50525.12317.1 ID=mRNA_H-paniculata_contig50525.12317.1|Name=mRNA_H-paniculata_contig50525.12317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig50525:951..1307+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCGTTTAACGACAGTATCAACGAATGTCCGTTGCGTGATGCGGACAA
CTCCCCTCACTATGTCACGCCAAAATGCACAACCCAGGTACCACTTGAGT
TCGCCTCTCGTGGTTTGGAACTCCGCCCTCAACGCTGCAAACAGAGAATC
GCACTTCACACTTTTACCAGCAACAATTACATCATCTACATGAACACACA
GAATCATATCTACCACCCCATTTTTCTCGAGCCTAAACACACAAGGGTCA
GACTTGGATTGCGTCATGCCGACGTTGTTTACGAGTACTTCTACAAGGCG
CTTTGAGAAGCGTTTAACGACAGTATCAACGAATGTCCGTTGCGTGATGC
GGACAACTCCCCTCACTATGTCACGCCAAAATGCACAACCCAGGTACCAC
TTGAGTTCGCCTCTCGTGGTTTGGAACTCCGCCCTCAACGCTGCAAACAG
AGAATCGCACTTCACACTTTTACCAGCAACAATTACATCATCTACATGAA
CACACAGAATCATATCTACCACCCCATTTTTCTCGAGCCTAAACACACAA
GGGTCAGACTTGGATTGCGTCATGCCGACGTTGTTTACGAGTACTTCTAC
AAGGCGCTTTGA
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