prot_H-paniculata_contig5052.12316.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5052.12316.1
Unique Nameprot_H-paniculata_contig5052.12316.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length492
Homology
BLAST of mRNA_H-paniculata_contig5052.12316.1 vs. uniprot
Match: A0A6H5K5U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5U4_9PHAE)

HSP 1 Score: 306 bits (785), Expect = 1.100e-95
Identity = 233/507 (45.96%), Postives = 286/507 (56.41%), Query Frame = 0
Query:    6 LIAHALFSSLSGLSISITGFGCDVAIRELYAVVSSSKPANGALSYVGAAPTAINSALCAALXXXXXXXXXRRLMNRSLLLNTLPLTLMGVVLSLNTFSDSVRAVLVPSFGACLLGLALTVLWIEFAVSRHRRKVHPARESGDDGRQDVLSWRLTG---VLGTASFAAGIVSGWCPPPGPALMAVLLVRGRSGA----LVGAGEWRATAALITFSACILRMGLLLLENGASVGPMPEISVLLVGGFVGLGCGNLCLRCVFYS--GRNNSNNGSSISTEDAVQ-RRTPPAAVFHSSVVALALISSIAMITGGAPAIMTFLVHPLALIALALTCVVGLAGCVCGCRAGA----GREYEDARGAYGEVALDNNDL-EVELAPFTAGANDLERDTPAGDDEYRDGYLDEEDGYLADEGETESRRNRSGGGXGRGGVRGVETRGGGRVVGDQRGLLLP-----DNTHEQAS-AGGQKARIVEAERKDGGDRGARKEPAPSAQSLFPQGHTMEL 491
            L+ H   S LSGLS++ITGF CD A RE+   ++    A  A S       AIN    A L         RRL+N +LLLNTLPLT +GVVLSLN FS SV A LVP+ GACL GL+L  LW+E A  RH   V   RE  DDGR+   SW+ TG   VL  AS   G++SG CPPPGPA M VLL  G  G+     VG GEWRATAAL+T SA +LR+GLLLLENGA+VGP+PE+S L++GG  GLG GNL LR +     G N+S NGS+ S  DA +   TP AA    +V+A+AL+SSIAM  GG PA +  +  P+   ALA T +V   G + GC  G              AYGEVA D+ +  EVEL PF     D E     GD++Y    LDEEDGYLADEGE E   +R     G GG     T     +   +R  L P      +T  +AS A    A +V  E         + + AP A+S+FP GHT+EL
Sbjct:    4 LLVHGALSFLSGLSVAITGFDCDSA-REILTELAPDSSAFDASS-------AINMGFSAGLVTAVQAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFGLSLAKLWMELADCRHETSV---REP-DDGRESSRSWKWTGDLCVLSVASLTGGLLSGSCPPPGPAFMVVLLAAGVGGSGDALAVGGGEWRATAALVTCSASLLRVGLLLLENGAAVGPLPEVSGLVLGGLAGLGIGNLSLRLLSRPRWGINDSKNGSANSAADAYRWHDTPTAAALRRAVLAVALVSSIAMAAGGPPAALAAVSRPVVAGALAATLLVASFGALWGCTVGTEGAXXXXXXXXXXAYGEVAADDREAHEVELRPFVGEGTDDEN--VRGDEDY----LDEEDGYLADEGEMERSASRGSSKRGSGGQVEYST-----LPPARRSSLGPPRRGVSSTGARASGAAAPPAAVVGKE---------KMKEAPLAKSMFPAGHTVEL 478          
BLAST of mRNA_H-paniculata_contig5052.12316.1 vs. uniprot
Match: D7FQ64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ64_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 1.680e-60
Identity = 167/412 (40.53%), Postives = 197/412 (47.82%), Query Frame = 0
Query:    6 LIAHALFSSLSGLSISITGFGCDVAIRELYAVVSSSKPANGALSYVGAAPTAINSALCAALXXXXXXXXXRRLMNRSLLLNTLPLTLMGVVLSLNTFSDSVRAVLVPSFGACLLGLALTVLWIEFAVSRHRRKVHPARESGDDGRQDVLSWRLTGVLGTASFAAGIVSGWCPPPGPALMAVLLVRGRSGA----LVGAGEWRATAALITFSACILRMGLLLLENGASVGPMPEISVLLVGGFVGLGCGNLCLRCVFYSGRNNSNNGSSISTEDAVQRRTPPAAVFHSSVVALALISSIAMITGGAPAIMTFLVHPLALIALALTCVVGLAGCVCGCRAGAGREYEDARGAYGEVALDNNDL-EVELAPFTAGANDLERDTPAGDDEYRDGYLDEEDGYLADEGETESRRNRS 412
            L+ H   S LSGLS++ITGF CD A RE   +++   P + A      A +AIN    A L         RRL+N +LLLNTLPLT +GVVLSLN FS SV A LVP+ GACL GL+L  LW+E A  RH   V   RE  DD R+   SW+ TGVL  AS   G++SG CPPPGPA M VLL  G  G+     VG GEWRATAAL+T SA +LR+GLLLLENGA+VGP+PE                                                                      GA                                  AG     ARGAYG+VA D+ +  EVEL PF     D E     GD++Y    LDEEDGYLADEGETE   +RS
Sbjct:   74 LLMHGTLSFLSGLSVAITGFDCDSA-RE---ILTEMAPDSSAFD----ASSAINMGFSAGLVTAVQAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFGLSLAKLWMELADCRHETSV---REPDDD-RESSRSWKWTGVLSVASLTGGLLSGSCPPPGPAFMVVLLAAGVGGSGDALAVGGGEWRATAALVTCSASLLRVGLLLLENGAAVGPLPE----------------------------------------------------------------------GA----------------------------------AGXXXXXARGAYGKVAADDREAHEVELRPFVGKGTDDEN--VRGDEDY----LDEEDGYLADEGETERSASRS 363          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5052.12316.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5U4_9PHAE1.100e-9545.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ64_ECTSI1.680e-6040.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..26
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 83..103
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 336..491
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..49
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 181..199
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 258..283
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 133..152
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 206..223
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 307..311
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 235..257
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 312..335
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..132
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 200..205
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 50..71
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 176..180
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 72..82
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 104..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 153..175
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 224..234
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 284..306
NoneNo IPR availableTMHMMTMhelixcoord: 7..26
NoneNo IPR availableTMHMMTMhelixcoord: 48..70
NoneNo IPR availableTMHMMTMhelixcoord: 285..307
NoneNo IPR availableTMHMMTMhelixcoord: 312..334
NoneNo IPR availableTMHMMTMhelixcoord: 235..257
NoneNo IPR availableTMHMMTMhelixcoord: 110..132
NoneNo IPR availableTMHMMTMhelixcoord: 83..100
NoneNo IPR availableTMHMMTMhelixcoord: 153..175

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5052contigH-paniculata_contig5052:786..6945 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5052.12316.1mRNA_H-paniculata_contig5052.12316.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5052 749..8458 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5052.12316.1 ID=prot_H-paniculata_contig5052.12316.1|Name=mRNA_H-paniculata_contig5052.12316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=492bp
MSTNELIAHALFSSLSGLSISITGFGCDVAIRELYAVVSSSKPANGALSY
VGAAPTAINSALCAALITALQATLQRRLMNRSLLLNTLPLTLMGVVLSLN
TFSDSVRAVLVPSFGACLLGLALTVLWIEFAVSRHRRKVHPARESGDDGR
QDVLSWRLTGVLGTASFAAGIVSGWCPPPGPALMAVLLVRGRSGALVGAG
EWRATAALITFSACILRMGLLLLENGASVGPMPEISVLLVGGFVGLGCGN
LCLRCVFYSGRNNSNNGSSISTEDAVQRRTPPAAVFHSSVVALALISSIA
MITGGAPAIMTFLVHPLALIALALTCVVGLAGCVCGCRAGAGREYEDARG
AYGEVALDNNDLEVELAPFTAGANDLERDTPAGDDEYRDGYLDEEDGYLA
DEGETESRRNRSGGGGGRGGVRGVETRGGGRVVGDQRGLLLPDNTHEQAS
AGGQKARIVEAERKDGGDRGARKEPAPSAQSLFPQGHTMEL*
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