mRNA_H-paniculata_contig5049.12312.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig5049.12312.1 vs. uniprot
Match: A0A6H5K0Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y1_9PHAE) HSP 1 Score: 352 bits (903), Expect = 1.420e-112 Identity = 229/449 (51.00%), Postives = 270/449 (60.13%), Query Frame = 1
Query: 76 FALEQQEVAAPPWGGRWLTSSAVLTDVQTVSPASELRHAT-GDDGQSDQ-KKKLFVGMAPKAAYEADYRPVFAPFGTIVDIYVIRDRNGFSKGCAFVKYDLVQSARCAIEALHDKYIMPGGFRTLVVAIADDRRGPHSTATSSTWQSIDPVG-----LPCLDSCRTIRGSFSGVEYSPSVSCCSSSGGVEFWPGHVSSVPGQKPASSPQA-AYAIPAPSAPAAIPPSIPSSATMVPGVQYLFSDGSSPPHGTYVYYPCGLPASSSSCHQTAPMATNRVVGKPHRNLSVASTALDPTAAVWYDGGRESSHRTFASPTMGLAQNVQHDTVRGRERKDLYCAFERSNRGMGIISNPAEEGRRWAKQPVGPSGANLFVYYLPGSLSDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYTNPAHADAAIARMNGFFIGNKRLKVVRKRGQ 1398
F+ E +E A P W WL +S + + S R GD +DQ KKKLFVGMAPK+AYE DYR VF PFGT +DIYVIRDRNGFSKGCAFV+Y+ V+SA AIEALHDKYIMPGGFRTLVV +ADDRRGP ++A +T D VG L L + GS S V G + + V + ++PQA A A+ AP P S PSS ++ G+ Y F G +PP GTYVYYP +P+SS +A + KPH SV S A+ G + +G A+ Q D G +R+ R G P E GRRWAKQ VGP+GANLFVYYLPGSL+DADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSY+ P A+AAI+ MNGFFIG KRLKVVRKRGQ
Sbjct: 12 FSFEHRETA-PTWSVGWLPTSPTMAEQHNDDAFSRPREMLLGDHAHTDQQKKKLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRDRNGFSKGCAFVRYESVRSASDAIEALHDKYIMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRDAVGSGDVLLRSLSRPSSFMGSDSSVG-----------GSIPSFGNLVGQ--NRSTVAAPQAGATAV----APTIAPGSRPSSG-LLSGMPY-FLCGGNPPQGTYVYYPY-VPSSSVQHDTGLSVAPVGIGAKPHHAFSVGSPAV---------GNNDRCE-------LG-ARGAQEDGYTG----------DRTVRKFGT-GGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQKRLKVVRKRGQ 411
BLAST of mRNA_H-paniculata_contig5049.12312.1 vs. uniprot
Match: D7FV61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV61_ECTSI) HSP 1 Score: 345 bits (886), Expect = 3.190e-112 Identity = 228/443 (51.47%), Postives = 267/443 (60.27%), Query Frame = 1
Query: 61 VTRADFALEQQEVAAPPWGGRWLTSSAVLTDVQTVSPASELRHAT-GDDGQSDQ-KKKLFVGMAPKAAYEADYRPVFAPFGTIVDIYVIRDRNGFSKGCAFVKYDLVQSARCAIEALHDKYIMPGGFRTLVVAIADDRRGPHSTATSSTWQSIDPVGLPCLDSCRTIRGSFSGVEYSPSVSCCSSSGGVEFWPGHVSSVPGQKPAS--SPQAAYAIPAPSAPAAIPPSIPSSATMVPGVQYLFSDGSSPPHGTYVYYPCGLPASSSSCHQTAPMATNRVVG-KPHRNLSVASTALDPTAAVWYDGGRESSHRTFASPTMGLAQNVQHDTVRGRERKDLYCAFERSNRGMGIISNPAEEGRRWAKQPVGPSGANLFVYYLPGSLSDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYTNPAHADAAIARMNGFFIGNKRL 1374
+TR F+ E +E A PPW WL +S + + T S R GD +DQ KKKLFVGMAPK+AYE DYR VF PFGT +DIYVIRDRNGFSKGCAFV+Y+ V+SA AIEALHDK+IMPGGFRTLVV +ADDRRGP ++A +T D VG G F + PS S SGG P + +V GQ ++ +PQA AP P S PSS ++ G+ Y F G +PP GTYVYYP SSS H T A +G KPH SV S A+ G + +G A+ Q D G +R+ R G P E GRRWAKQ VGP+GANLFVYYLPGSL+DADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSY+ P A+AAI+ MNGFFIG K L
Sbjct: 4 ITRGPFSYEHRETA-PPWSVGWLPTSPTMAEQHTDDAFSRPRELLLGDHAHTDQQKKKLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRDRNGFSKGCAFVRYESVKSASDAIEALHDKHIMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRDAVGSG--------DGLFRALSR-PSSFMGSDSGGGGTIPS-LGNVVGQNRSTVTAPQAGATA---FAPTVAPGSGPSSG-LLSGMPY-FLCGGNPPQGTYVYYP--YVPSSSVQHDTGSSAAPAGIGAKPHHAFSVGSPAV---------GNNDRCE-------LG-ARGAQEDGYTG----------DRTVRKFGT-GGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQKFL 400
BLAST of mRNA_H-paniculata_contig5049.12312.1 vs. uniprot
Match: D7FV60_ECTSI (Trinucleotide repeat containing 4, isoform CRA_d n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV60_ECTSI) HSP 1 Score: 217 bits (552), Expect = 2.600e-61 Identity = 160/407 (39.31%), Postives = 196/407 (48.16%), Query Frame = 1
Query: 202 DGQSDQKKKLFVGMAPKAAYEADYRPVFAPFGTIVDIYVIRDRNGFSKGCAFVKYDLVQSARCAIEALHDKYIMPGGFRTLVVAIADDRRGPHSTATSSTWQSIDPVGLPCLDSCRTIRGSFSGVEYSPSVSCCSSSGGVEFWPGHVSSVPGQKPASSPQAAYAIPAPSAPAAIPPSIPSSATMVPGVQYLFSDGS-----SPPHGTYVYYPCGLPASSSSCHQTAPMATNRVVGKPHRNLSVASTALDPTAAVWYDGGRESSHRTFASPTMG-----LAQNVQHDTVRGRERKDLYCAFERSNRGMGIISNPAEEGRRWAKQPVGPSGANLFVYYLPGSLSDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYTNPAHADAAIARMNGFFIGNKRLKVVRKR 1392
+GQ++Q+ KLFVGMAPK+A E + R VFAP+GT+ +I+VIR+++G +KGCAFVKY QSA AIEALH++Y M GG R LVV AD++RG + A G G+ SP W GH PG A A Y P P P S M+ G+ Y + G +P G+YVYYP G P G P + GG H SP+ G + PAE GP GANLF+Y+LP LSDADLATAFAPFG VLSAKVY DR +GESKGFGFVSY+ P+HA+AAIA+MNGF IG+KRLKV KR
Sbjct: 124 EGQAEQENKLFVGMAPKSANEDEIRAVFAPYGTLREIHVIRNQDGTNKGCAFVKYTTRQSALDAIEALHEQYTMQGGPRPLVVKFADNKRGTQAAA-----------------------GRLGGLIGSPGRHGSGPHPEAGGWMGH----PG---AGGQGAGYPYPMPGPPM--------SPHMMSGMPYGMAYGGGQAPGAPAQGSYVYYPYGAP------------------GYPPQ-----------------PGGPGQYHSGPPSPSRGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRPAE----------GPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSYSLPSHAEAAIAQMNGFQIGSKRLKVQHKR 447
BLAST of mRNA_H-paniculata_contig5049.12312.1 vs. uniprot
Match: A0A7S0C1D5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C1D5_9STRA) HSP 1 Score: 165 bits (417), Expect = 1.830e-42 Identity = 137/389 (35.22%), Postives = 182/389 (46.79%), Query Frame = 1
Query: 241 MAPKAAYEADYRPVFAPFGTIVDIYVIRDRNGFSKGCAFVKYDLVQSARCAIEALHDKYIMPGGFRTLVVAIADDRRGPHS-TATSSTWQSIDPVGLPCLDSCRTIRGSFSGVEYSPSVSCCSSSGGVEFWPGHVSSVPGQKPASSPQAAYAIPAPSAPAAIPPSIPSSATMVPGVQYLFSDGSSPPHGTYVYYPCGLPASSSSCHQTAPMATNRVVGKPHRNLSVASTALDPTAAVWYDGGRESSHRTFASPTMGLAQNVQHDTVRGRERKDLYCAFERSNR---GMGIISNPAEEGRRWAKQP-VGPSGANLFVYYLPGSLSDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYTNPAHADAAIARMNGFFIGNKRLKVVRKR 1392
M + A E+ R +FAPFG I +IY+IR+ +G +KGCAF+K+ +SA AIE L+DK +M G R L+V AD + + T + P G P Y P + + + H VP IP PSA + QY + G+ PPHG Y+Y P S + TA A P + P G Q +++ R++ + A+ SN+ G +I A G A +P GPSGANLF+Y+LP L+DADLATAF PFG V+SAKVY D+ TGESKGFGFVSY + A+AAI +MNGF IG+KRLKV KR
Sbjct: 1 MTSRNADESAIRELFAPFGEIREIYIIRNADGSNKGCAFLKFQHRESALSAIEVLNDKIVMEGATRPLIVKFADTKAQRRARTGVGPGRIGMPPTGHP-------------NPYYMPHSNPAML---YQHYQQHGHQVP-------------IPVPSA-------LGGQYQQSAYSQYPAAAGT-PPHG-YMYQHMQAPPPSPYGYPTA----XXXXXXXXXXXXXXXXATPPQQTL---------------PNAGHTQTAS--SLQSRQQAPVLQAYAVSNQRQDGTIVIPAAANAGGGMAPRPREGPSGANLFIYHLPHDLTDADLATAFNPFGNVISAKVYVDKFTGESKGFGFVSYDSTMAAEAAIEQMNGFQIGSKRLKVQHKR 330
BLAST of mRNA_H-paniculata_contig5049.12312.1 vs. uniprot
Match: A0A7S4QD22_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QD22_9STRA) HSP 1 Score: 169 bits (428), Expect = 2.520e-42 Identity = 142/415 (34.22%), Postives = 181/415 (43.61%), Query Frame = 1
Query: 163 VSPASELRHATGDDGQSDQKKKLFVGMAPKAAYEADYRPVFAPFGTIVDIYVIRDRNGFSKGCAFVKYDLVQSARCAIEALHDKYIMPGGFRTLVVAIADD--RRGP--HSTATSSTWQSIDPVGLPCLDSCRTIRGSFSGVEYSPSVSCCSSSGGVEFWPGHVSSVPGQKPASSPQAAYAIPAPSAPAAIPPSIPSSATMVPGVQYLFSDGSSPPHGTYVYYPCGLPASSSSCHQTAPMATNRVVGKPHRNLSVASTALDPTAAVWYDGGRESSHRTFASPTMGLAQNVQHDTVR-GRERKDLYCAFERSNRGMGIISNPAEEGRRWAKQPVGPSGANLFVYYLPGSLSDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYTNPAHADAAIARMNGFFIGNKRLKVVRKR 1392
V PASE SD + KLFVGM P+ E D R +F+PFG I IY+IR+ +G KGCAFVK+ +SA+ AI LH +Y M G R+LVV AD RR + A +++ G P + G V + P P Q P P A P P P + G Q G SPP G P S + + PH + + S+ A+ G+ Q G ++ + R G + + R GP+GANLF+Y+LP L+DADLATAF PFG V+SAKVY DR TGESKGFGFVSY + A+ AI +MNGF IG KRLKV KR
Sbjct: 269 VRPASE---------GSDTEVKLFVGMLPRKTTEKDLREIFSPFGDISAIYLIRNDDGTQKGCAFVKFHQRESAQAAINTLHGQYCMEGMRRSLVVKYADKGYRRASRRYQAARREAYENAVMHGHP-------------------------NPGSVFYVPSGPGGPPPQMPGFPPGGPMAYPQP----------PQAGPHAEGTQ-----GPSPPMGI------SPPVSGTGQYSVGQPPQYATGAYPHGSHTPPSSQXXXXXXXXXXXXXX---XXXAAAPYGMPQGFSGGQAGPGGAHQNKPRFYGRGQNRDGQLPHATTPRPR-----EGPAGANLFIYHLPHDLTDADLATAFNPFGNVISAKVYVDRYTGESKGFGFVSYDSVISAEHAIEQMNGFQIGTKRLKVQHKR 620
BLAST of mRNA_H-paniculata_contig5049.12312.1 vs. uniprot
Match: A0A7S1BYN5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BYN5_9STRA) HSP 1 Score: 167 bits (424), Expect = 4.670e-42 Identity = 145/434 (33.41%), Postives = 191/434 (44.01%), Query Frame = 1
Query: 124 WLTSSA-----VLTDVQTVSPAS---ELRHATGDDGQS---DQKKKLFVGMAPKAAYEADYRPVFAPFGTIVDIYVIRDRNGFSKGCAFVKYDLVQSARCAIEALHDKYIMPGGFRTLVVAIADDRRGPHSTATSSTWQSIDPVGLPCLDSCRTIRGSFSGVEYSPSVSCCSSSGGVEFWPGHVSSVPGQKPASSPQAAYAIPAPSAPAAIPPSIPSSATMVPGVQYLFSDGSSPPHGTYVYYPCGLPASSSSCHQTAPMATNRVVGKPHRNLSVASTALDPTAAVWYDGGRESSHRTFASPTMGLAQNVQHDTVRGRERKDLYCAFERSNRGMGIISNPAEEGRRWAKQPVGPSGANLFVYYLPGSLSDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYTNPAHADAAIARMNGFFIGNKRLKVVRKR 1392
W +SSA VL D T + ++R A G + +Q+ KLF+GM + A E R VFA FG I +IY+IR+ +G +KGCAF+KY SA AI L++K +M G R L+V AD + + + + + G RG GH PS+P IPP + P Q + PH Y YP SSS P P + + + + + A GG S+ +P + + RG R +R G +N + GP GANLF+Y+LP L+DADLATAFAPFG V+SAKVY D+ TGESKGFGFVSY ADAAI +MNGF IG+KRLKV KR
Sbjct: 175 WSSSSAERVQEVLHDQLTFTNGRKPVQIRPAIGSNSTPTTPEQENKLFIGMTSRNADENAIREVFASFGEIREIYIIRNADGSNKGCAFLKYSQRDSALSAITMLNNKVVMDGASRPLIVKFADTKAQRRARGNGMSSRGLGSPG----------RGQS----------------------GHN--------------------PSSPYFIPP-----VPVYPNYQAQRAPPIGIPH-QYSQYPPQYGQSSSQNFMYVPTGPYGYPSAPFNHNQMGNHSGGGSGAQ-QPGGAPSAFEPVPNPNHAVHPS------RGSPRTSPAPGKVYQHRSDGPNTN--------TRPKEGPPGANLFIYHLPHDLTDADLATAFAPFGNVISAKVYVDKFTGESKGFGFVSYDVVTSADAAIEQMNGFQIGSKRLKVQHKR 535
BLAST of mRNA_H-paniculata_contig5049.12312.1 vs. uniprot
Match: A0A448YXA3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YXA3_9STRA) HSP 1 Score: 167 bits (424), Expect = 6.370e-42 Identity = 139/395 (35.19%), Postives = 179/395 (45.32%), Query Frame = 1
Query: 211 SDQKKKLFVGMAPKAAYEADYRPVFAPFGTIVDIYVIRDRNGFSKGCAFVKYDLVQSARCAIEALHDKYIMPGGFRTLVVAIADDRRGPHSTATSSTWQSIDPVGLPCLDSCRTIRGSFSGVEYSPSVSCCSSSGGVEFWPGHVSSVPGQKPASSPQAAYAIPAPSAPAAIPPSIPSSATMVPGVQYLFSDGSSPPHGTYVYYPCGLPASSSSCHQTAPMATNRVVGKPHRNLSVASTALDPTAAVWYDGGRESSHRTFASPTMGLAQNVQHDTVRGRERKDLYCAFERSNRGMGIISNPAEEGRRWAKQP-VGPSGANLFVYYLPGSLSDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYTNPAHADAAIARMNGFFIGNKRLKVVRKR 1392
S Q+ KLF+GM + A E + R +FAPFG I +IY+IR+ +G SK AF++Y +A AIEALH+ +M G R L+V AD + H S + +G P G + G +PGH + G P P YA A PP +Q+ P G +Y P G P + H +P P+ S R P G QH + + KD GI NP + +P GP+GANLFVY+LP L+DADLATAF PFG V+SAKVY DR TG+SKGFGFVSY + A++AI +MNGF IGNKRLKV KR
Sbjct: 264 SVQENKLFIGMLSRRAGEDEVRELFAPFGEIREIYMIRNGDGTSKCAAFLRYVGRDAAVNAIEALHNNLVMEGAARPLIVKFADTKHQRHVRQMRSVRRHEMFIGGPA--------GGYPGP-----------------YPGHHMPM-GPPPVGGPPHQYA-----AHMGAPPH---------QMQHYGGPYPGPGAGGQMYNPMGYPPAP---HYPSP--------HPYGGFS---------------------ERQGQGPDGGH----QHQSTHPQRMKD------------GIRGNPRHHNQSTNPRPREGPAGANLFVYHLPHDLTDADLATAFNPFGNVISAKVYVDRYTGDSKGFGFVSYDSVISAESAIEQMNGFQIGNKRLKVQHKR 570
BLAST of mRNA_H-paniculata_contig5049.12312.1 vs. uniprot
Match: F6WTG3_CIOIN (Uncharacterized protein n=7 Tax=Ciona intestinalis TaxID=7719 RepID=F6WTG3_CIOIN) HSP 1 Score: 164 bits (416), Expect = 6.960e-42 Identity = 141/414 (34.06%), Postives = 191/414 (46.14%), Query Frame = 1
Query: 199 DDGQSDQKKKLFVGMAPKAAYEADYRPVFAPFGTIVDIYVIRDRNGFSKGCAFVKYDLVQSARCAIEALHDKYIMPGGFRTLVVAIAD---DRRGPHSTATSSTWQSIDPVGLPCLDSCRTIRGSFSGVEYSPSVSCCSSSGGVEFWPGHVSSVPGQKPASSPQAAYAIPAPSAPAAIPPSIPSSATMVPGVQYLFSDGSSPPHGTYVYYPCGLPASSSSCHQTAPMATNRVVGKPHRNLSVASTALDPTAAVWYDGGRESSHRT--FASPTMGLAQNVQHDTVRGRERKDLYCAFERSNR----GMGIISNPAEEGRRWA-------KQPVGPSGANLFVYYLPGSLSDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYTNPAHADAAIARMNGFFIGNKRLKVVRKR 1392
D + +KLFVGM K E D R +F PFGTI + ++R G SKGCAFVK Q A+ A+EALH MPG +LVV AD +R + T+ I PV L G++ G+ Y+ +V V + PG +SPQ PAAI P++AT++ + ++P G +P++ S AP+ T ++ P + + P A Y G + + R AS M AQ + V + Y A + + I +N + A K+ GP G NLF+Y+LP SDADLA F PFG V+SAKV+ DR T +SK FGFVS+ N + AAI MNGF IG KRLKV KR
Sbjct: 100 DTVSKGEDRKLFVGMLGKRQNEDDVRILFEPFGTIEECTILRTPEGQSKGCAFVKLSCHQEAKSAMEALHGSQTMPGASSSLVVKFADTDKERAVRRMQQMAQTYGLISPVPLQI--------GTY-GLPYAQNV---------------VPATPGWNSLASPQ----------PAAINGLAPAAATVIQQPTVIHHQHATPMSG--------VPSTPQS--PVAPLTTLNLLPPPSSATASTPEGVYPIQA--YPGTQGVAPRVPEHASTPMSYAQPQPYTVVYVPAQS--YGAPQYAPTVAPVAQSITANQLQTNALLASSTNAPQKEATGPDGCNLFIYHLPQEFSDADLANVFQPFGNVISAKVFIDRATNQSKCFGFVSFDNAISSQAAIQTMNGFQIGMKRLKVQLKR 465
BLAST of mRNA_H-paniculata_contig5049.12312.1 vs. uniprot
Match: UPI001E1DFD11 (CUGBP Elav-like family member 3-B isoform X1 n=6 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DFD11) HSP 1 Score: 165 bits (417), Expect = 1.050e-41 Identity = 139/430 (32.33%), Postives = 190/430 (44.19%), Query Frame = 1
Query: 163 VSPASELRHATGDDGQSDQKKKLFVGMAPKAAYEADYRPVFAPFGTIVDIYVIRDRNGFSKGCAFVKYDLVQSARCAIEALHDKYIMPGGFRTLVVAIAD---DRRGPHSTATSSTWQSIDPVGLPCLDSCRTIRGSFSGVEYSPSVSCCSSSGGVEFWPGHVSSVPGQKPASSPQAAYAIPAPSAPAAIPPSIPSSATMVPGVQYLFSDGSSPPHGTYVYYPCGLPASSSSCHQTAPMATNRVVGKPHRNLSVASTALDPTAAVWYDGGRESSHRTFASPTMGLAQNVQHDTVRGRERKDLYCAFERSNRGMGIIS-----NPAEEG--RRWAKQPV----------GPSGANLFVYYLPGSLSDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYTNPAHADAAIARMNGFFIGNKRLKVVRKR 1392
V PA A D + + +K LFVGM K E D + +F PFG + ++ ++RD+NG SKGC+FVKY A+ AI LH MPG +LVV AD +R+ + + ++ +P+G R IR S G+ S + V GH + P + Q A+ A +AP I S+ATM P L + S+ AT + G P + L PT + + +A+ A T+ + +Y A G + + NP ++ + A P GP G NLF+Y+LP DA+LA F PFG V+SAKVY DR T +SK FGFVS+ NPA A AAI MNGF IG KRLKV KR
Sbjct: 128 VKPADSESRAERDPAKHEDRK-LFVGMLNKQQTEDDIKHLFTPFGQVEELTILRDQNGNSKGCSFVKYSNHSEAQAAINNLHGSQTMPGASSSLVVKFADTEKERQLRRNATDGTISRAPEPLGSITDRGLRRIR-SHQGISKSTHDTIMQQQALVAAGQGHYLT-----PVTLAQIPQAVTALAAPNGI-----STATMTPTTASLANGEST--------------------------ATTPISGAP-------PSVLSPTPVAGFPIAQNGQQEIYANGIPAYAAQ----TITNGDPSQIYTAVTPYGIGEYLTAYPTAFNPIQQALLQNAALMPTAQKEAVLTSTGPDGCNLFIYHLPQEFGDAELAQMFMPFGNVISAKVYVDRATNQSKCFGFVSFDNPACAQAAIQAMNGFQIGMKRLKVQLKR 508
BLAST of mRNA_H-paniculata_contig5049.12312.1 vs. uniprot
Match: UPI001E1DD999 (CUGBP Elav-like family member 3-A isoform X7 n=3 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DD999) HSP 1 Score: 162 bits (411), Expect = 1.050e-41 Identity = 137/433 (31.64%), Postives = 193/433 (44.57%), Query Frame = 1
Query: 154 VQTVSPASELRHATGDDGQSDQKKKLFVGMAPKAAYEADYRPVFAPFGTIVDIYVIRDRNGFSKGCAFVKYDLVQSARCAIEALHDKYIMPGGFRTLVVAIAD---DRRGPHSTATSSTWQSIDPVGLPCLDSCRTIRGSFSGVEYSPSVSCCSSSGGVEFWPGHVSSVPGQKPASSPQAAYAIPAPSAPAAIPPSIPSSATMVPGVQYLFSDGSSPPHGTYVYYPCGLPASSSSCHQTAPMATNRVVGKPHRNLSVASTALDPTAAVWYDGGRESSHRTFASPTMGLAQNVQHDTVRGRERKDLYCAFERSNRGMGIIS-----NPAEEG--RRWAKQPV----------GPSGANLFVYYLPGSLSDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYTNPAHADAAIARMNGFFIGNKRLKVVRKR 1392
+ T++ +++ A + D +KLFVGM K E D + +F PFG + ++ ++RD+NG SKGC+FVKY A+ AI LH MPG +LVV AD +R+ + + ++ +P+G R IR S G+ S + V GH + P + Q A+ A +AP I S+ATM P L + S+ AT + G P + L PT + + +A+ A T+ + +Y A G + + NP ++ + A P GP G NLF+Y+LP DA+LA F PFG V+SAKVY DR T +SK FGFVS+ NPA A AAI MNGF IG KRLKV KR
Sbjct: 20 LSTMNRPIQVKPADSESRAED--RKLFVGMLNKQQTEDDIKHLFTPFGQVEELTILRDQNGNSKGCSFVKYSNHSEAQAAINNLHGSQTMPGASSSLVVKFADTEKERQLRRNATDGTISRAPEPLGSITDRGLRRIR-SHQGISKSTHDTIMQQQALVAAGQGHYLT-----PVTLAQIPQAVTALAAPNGI-----STATMTPTTASLANGEST--------------------------ATTPISGAP-------PSVLSPTPVAGFPIAQNGQQEIYANGIPAYAAQ----TITNGDPSQIYTAVTPYGIGEYLTAYPTAFNPIQQALLQNAALMPTAQKEAVLTSTGPDGCNLFIYHLPQEFGDAELAQMFMPFGNVISAKVYVDRATNQSKCFGFVSFDNPACAQAAIQAMNGFQIGMKRLKVQLKR 402 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5049.12312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5049.12312.1 >prot_H-paniculata_contig5049.12312.1 ID=prot_H-paniculata_contig5049.12312.1|Name=mRNA_H-paniculata_contig5049.12312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=468bp RTHLLTLSPENILVSMDNTSVTRADFALEQQEVAAPPWGGRWLTSSAVLTback to top mRNA from alignment at H-paniculata_contig5049:6343..9427- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5049.12312.1 ID=mRNA_H-paniculata_contig5049.12312.1|Name=mRNA_H-paniculata_contig5049.12312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3085bp|location=Sequence derived from alignment at H-paniculata_contig5049:6343..9427- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5049:6343..9427- >mRNA_H-paniculata_contig5049.12312.1 ID=mRNA_H-paniculata_contig5049.12312.1|Name=mRNA_H-paniculata_contig5049.12312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2808bp|location=Sequence derived from alignment at H-paniculata_contig5049:6343..9427- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |