mRNA_H-paniculata_contig5049.12311.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig5049.12311.1
Unique Name	mRNA_H-paniculata_contig5049.12311.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig5049.12311.1 vs. uniprot
Match: D7FV62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV62_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 1.370e-62
Identity = 104/124 (83.87%), Postives = 111/124 (89.52%), Query Frame = 1

Query:    4 SSCVQVTRPSEPWEYSDGAVYLLRELCSVDSERGVLLFEEMADIARLTQFVQADCLRETIWKQLPAMAEAVGKKVFKRHLDLFLKPLFDTLSRITTSQLARHAAASCVRQLSVFVGPSIFNGRL 375
            S C QVTRPSEPWE+SDGAVYL+RELC  + E GV  FEE+AD+ARLT FVQADCLRETIWKQLPAM EAVGK VFKRHLD+FLKPLFDTLSRITTSQLARHAAASCVRQLS F+GPSIF GRL
Sbjct:  512 SDC-QVTRPSEPWEFSDGAVYLVRELCFANPEVGVTFFEELADVARLTHFVQADCLRETIWKQLPAMGEAVGKNVFKRHLDVFLKPLFDTLSRITTSQLARHAAASCVRQLSKFIGPSIFRGRL 634

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BLAST of mRNA_H-paniculata_contig5049.12311.1 vs. uniprot
Match: A0A7S2V715_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V715_9STRA)

HSP 1 Score: 153 bits (387), Expect = 7.420e-43
Identity = 76/124 (61.29%), Postives = 94/124 (75.81%), Query Frame = 1

Query:    4 SSCVQVTRPSEPWEYSDGAVYLLRELCSVDSERGVLLFEEMADIARLTQFVQADCLRETIWKQLPAMAEAVGKKVFKRHLDLFLKPLFDTLSRITTSQLARHAAASCVRQLSVFVGPSIFNGRL 375
            S C  VTRP++PWE++DG +YL+RELC+V  +  V  F  + ++ARL  FV AD LRET++K LPAMA  +GKKVFKRHLD FL+ LF+TLSR  T+QLA HAAA CV+ LS FVGP IF GRL
Sbjct:  236 SDCT-VTRPAQPWEFTDGCIYLVRELCAVAPDTAVEFFPGLVEVARLDHFVFADTLRETLFKSLPAMAHHLGKKVFKRHLDPFLEALFNTLSRAETAQLALHAAAHCVQDLSKFVGPGIFRGRL 358

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BLAST of mRNA_H-paniculata_contig5049.12311.1 vs. uniprot
Match: A0A835YU79_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU79_9STRA)

HSP 1 Score: 147 bits (372), Expect = 5.560e-39
Identity = 71/124 (57.26%), Postives = 91/124 (73.39%), Query Frame = 1

Query:    4 SSCVQVTRPSEPWEYSDGAVYLLRELCSVDSERGVLLFEEMADIARLTQFVQADCLRETIWKQLPAMAEAVGKKVFKRHLDLFLKPLFDTLSRITTSQLARHAAASCVRQLSVFVGPSIFNGRL 375
            S C +VTR S PWEY+DGA+Y+ +ELC+V  E    L  ++AD+A LT F QAD LRET++K LP MA  +GKK+F+ HL+  + PLFD L+R  T QLA HAA +CVR+LS F+GPSIF GRL
Sbjct:  507 SDC-EVTRASVPWEYADGAIYMAKELCAVAPEEAAALLPQLADVAALTHFPQADTLRETLFKALPEMARTLGKKLFRPHLEALIGPLFDALARPGTHQLAGHAAGACVRELSAFMGPSIFRGRL 629

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BLAST of mRNA_H-paniculata_contig5049.12311.1 vs. uniprot
Match: G5A0Q8_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A0Q8_PHYSP)

HSP 1 Score: 128 bits (322), Expect = 5.690e-32
Identity = 66/117 (56.41%), Postives = 83/117 (70.94%), Query Frame = 1

Query:   25 RPSEPWEYSDGAVYLLRELCSVDSERGVLLFEEMADIARLTQFVQADCLRETIWKQLPAMAEAVGKKVFKRHLDLFLKPLFDTLSRITTSQLARHAAASCVRQLSVFVGPSIFNGRL 375
            R  EPWE++DGA+Y++RELC V  +  V    ++ADIA L  F QA  L+ETIWKQLP M EA+GKKVFKR+L+LF  PL  TL    T++LA+ AA  CV Q+S  +GPSIF GRL
Sbjct: 1858 RDKEPWEHTDGAIYMVRELCDVAPDVAVKFLPQVADIAILRHFPQAAVLQETIWKQLPLMCEALGKKVFKRYLELFFDPLVFTLQG--TNRLAKFAARDCVAQISKQIGPSIFLGRL 1972

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BLAST of mRNA_H-paniculata_contig5049.12311.1 vs. uniprot
Match: A0A3M6V9S0_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V9S0_9STRA)

HSP 1 Score: 127 bits (320), Expect = 8.920e-32
Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = 1

Query:   25 RPSEPWEYSDGAVYLLRELCSVDSERGVLLFEEMADIARLTQFVQADCLRETIWKQLPAMAEAVGKKVFKRHLDLFLKPLFDTLSRITTSQLARHAAASCVRQLSVFVGPSIFNGRL 375
            R  EPWE++DGA+Y++RELC+V  +  V    ++ADIA L  F Q   L+ETIWKQ+PAM EA+GKKVFKR+L+LF  PL  TL    T+ LA+ AA  CV Q+S  +GPSIF GRL
Sbjct:  570 RDKEPWEHADGAIYMVRELCNVAPDVAVKFLPQIADIAILRHFPQTAVLQETIWKQVPAMCEALGKKVFKRYLELFFDPLVFTLQG--TNHLAKFAARDCVAQISKQIGPSIFLGRL 684

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BLAST of mRNA_H-paniculata_contig5049.12311.1 vs. uniprot
Match: M4BU68_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BU68_HYAAE)

HSP 1 Score: 127 bits (320), Expect = 9.000e-32
Identity = 66/117 (56.41%), Postives = 81/117 (69.23%), Query Frame = 1

Query:   25 RPSEPWEYSDGAVYLLRELCSVDSERGVLLFEEMADIARLTQFVQADCLRETIWKQLPAMAEAVGKKVFKRHLDLFLKPLFDTLSRITTSQLARHAAASCVRQLSVFVGPSIFNGRL 375
            R  EPWEY+DGA+Y++RELCSV  +  V    ++ADIA L  F Q   L+ETIWKQLP M E +GKKVFKR+L+LF  PL  TL    T++LA  AA  CV Q+S  +GPSIF GRL
Sbjct:  575 REKEPWEYTDGAIYMVRELCSVAPDVAVKYLPQVADIAILRHFPQTAVLQETIWKQLPVMCETLGKKVFKRYLELFFDPLVFTLQG--TNRLATFAARDCVAQISKQIGPSIFLGRL 689

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BLAST of mRNA_H-paniculata_contig5049.12311.1 vs. uniprot
Match: A0A833SVM8_PHYIN (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=A0A833SVM8_PHYIN)

HSP 1 Score: 127 bits (318), Expect = 1.690e-31
Identity = 64/117 (54.70%), Postives = 83/117 (70.94%), Query Frame = 1

Query:   25 RPSEPWEYSDGAVYLLRELCSVDSERGVLLFEEMADIARLTQFVQADCLRETIWKQLPAMAEAVGKKVFKRHLDLFLKPLFDTLSRITTSQLARHAAASCVRQLSVFVGPSIFNGRL 375
            R  EPWE++DGA+Y++RELC+V  +  V    ++AD+A L  F Q   L+ETIWKQLP M EA+GKKVFKR+L+LF  PL  TL    T++LA+ AA  CV Q+S  +GPSIF GRL
Sbjct:  576 RDKEPWEHTDGAIYMVRELCAVAPDVAVTYLPQVADVAILRHFPQTAVLQETIWKQLPLMCEALGKKVFKRYLELFFDPLVFTLQG--TNRLAKFAARDCVAQISKQIGPSIFLGRL 690

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BLAST of mRNA_H-paniculata_contig5049.12311.1 vs. uniprot
Match: D0NUL1_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NUL1_PHYIT)

HSP 1 Score: 127 bits (318), Expect = 1.970e-31
Identity = 64/117 (54.70%), Postives = 83/117 (70.94%), Query Frame = 1

Query:   25 RPSEPWEYSDGAVYLLRELCSVDSERGVLLFEEMADIARLTQFVQADCLRETIWKQLPAMAEAVGKKVFKRHLDLFLKPLFDTLSRITTSQLARHAAASCVRQLSVFVGPSIFNGRL 375
            R  EPWE++DGA+Y++RELC+V  +  V    ++AD+A L  F Q   L+ETIWKQLP M EA+GKKVFKR+L+LF  PL  TL    T++LA+ AA  CV Q+S  +GPSIF GRL
Sbjct: 1925 RDKEPWEHTDGAIYMVRELCAVAPDVAVTYLPQVADVAILRHFPQTAVLQETIWKQLPLMCEALGKKVFKRYLELFFDPLVFTLQG--TNRLAKFAARDCVAQISKQIGPSIFLGRL 2039

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BLAST of mRNA_H-paniculata_contig5049.12311.1 vs. uniprot
Match: A0A3F2RW00_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RW00_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.220e-31
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1

Query:   25 RPSEPWEYSDGAVYLLRELCSVDSERGVLLFEEMADIARLTQFVQADCLRETIWKQLPAMAEAVGKKVFKRHLDLFLKPLFDTLSRITTSQLARHAAASCVRQLSVFVGPSIFNGRL 375
            R  EPWE+SDGA+Y++RELCSV  E  V    ++ADIA L  F Q   L+ET+WKQLP M EA+GKK FKR+L+LF  P+  TL    T++LA+ AA  CV Q+S  +GPSIF GRL
Sbjct:  554 RDKEPWEHSDGAIYMVRELCSVAPEVAVKYLPQVADIAILRHFPQTAVLQETVWKQLPLMCEALGKKNFKRYLELFFDPMVFTLQG--TNRLAKFAARDCVAQISKQIGPSIFLGRL 668

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BLAST of mRNA_H-paniculata_contig5049.12311.1 vs. uniprot
Match: H3GZB7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GZB7_PHYRM)

HSP 1 Score: 126 bits (317), Expect = 2.300e-31
Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = 1

Query:   25 RPSEPWEYSDGAVYLLRELCSVDSERGVLLFEEMADIARLTQFVQADCLRETIWKQLPAMAEAVGKKVFKRHLDLFLKPLFDTLSRITTSQLARHAAASCVRQLSVFVGPSIFNGRL 375
            R  EPWE++DGA+Y++RELC+V  +  V    ++ADIA L  F Q   L+ETIWKQLP M EA+GKKVFKR+L+LF  PL  TL    T++LA+ AA  CV Q+S  +GPSIF GRL
Sbjct:  574 RDKEPWEHADGAIYMVRELCAVAPDVAVKYLPQVADIAILRHFPQTAVLQETIWKQLPLMCEALGKKVFKRYLELFFDPLVFTLQG--TNRLAKFAAHDCVAQISKQIGPSIFLGRL 688

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig5049.12311.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig5049.12311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FV62_ECTSI	1.370e-62	83.87	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A7S2V715_9STRA	7.420e-43	61.29	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A835YU79_9STRA	5.560e-39	57.26	Armadillo-type protein n=1 Tax=Tribonema minus Tax...	[more]
G5A0Q8_PHYSP	5.690e-32	56.41	Uncharacterized protein n=1 Tax=Phytophthora sojae...	[more]
A0A3M6V9S0_9STRA	8.920e-32	55.56	Uncharacterized protein n=1 Tax=Peronospora effusa...	[more]
M4BU68_HYAAE	9.000e-32	56.41	Uncharacterized protein n=1 Tax=Hyaloperonospora a...	[more]
A0A833SVM8_PHYIN	1.690e-31	54.70	Uncharacterized protein n=13 Tax=Phytophthora TaxI...	[more]
D0NUL1_PHYIT	1.970e-31	54.70	Uncharacterized protein n=1 Tax=Phytophthora infes...	[more]
A0A3F2RW00_9STRA	2.220e-31	55.56	Uncharacterized protein n=3 Tax=Phytophthora kerno...	[more]
H3GZB7_PHYRM	2.300e-31	55.56	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig5049	contig	H-paniculata_contig5049:535..1313 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	213.4
Seed ortholog evalue	6.1e-53
Seed eggNOG ortholog	2880.D7FV62
Hectar predicted targeting category	other localisation
EggNOG OGs	28JXF@1,2QSBS@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	2
Model size	375
Cds size	375
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930483.3216825-CDS-H-paniculata_contig5049:534..726	1622930483.3216825-CDS-H-paniculata_contig5049:534..726	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig5049 535..726 +
1691481312.2874284-CDS-H-paniculata_contig5049:534..726	1691481312.2874284-CDS-H-paniculata_contig5049:534..726	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig5049 535..726 +
1622930483.3363419-CDS-H-paniculata_contig5049:1130..1313	1622930483.3363419-CDS-H-paniculata_contig5049:1130..1313	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig5049 1131..1313 +
1691481312.2987242-CDS-H-paniculata_contig5049:1130..1313	1691481312.2987242-CDS-H-paniculata_contig5049:1130..1313	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig5049 1131..1313 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig5049.12311.1	prot_H-paniculata_contig5049.12311.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig5049 535..1313 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig5049:535..1313+
coding sequence from alignment at H-paniculata_contig5049:535..1313+

protein sequence of mRNA_H-paniculata_contig5049.12311.1

>prot_H-paniculata_contig5049.12311.1 ID=prot_H-paniculata_contig5049.12311.1|Name=mRNA_H-paniculata_contig5049.12311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MSSCVQVTRPSEPWEYSDGAVYLLRELCSVDSERGVLLFEEMADIARLTQ
FVQADCLRETIWKQLPAMAEAVGKKVFKRHLDLFLKPLFDTLSRITTSQL
ARHAAASCVRQLSVFVGPSIFNGRL

mRNA from alignment at H-paniculata_contig5049:535..1313+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig5049.12311.1 ID=mRNA_H-paniculata_contig5049.12311.1|Name=mRNA_H-paniculata_contig5049.12311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=779bp|location=Sequence derived from alignment at H-paniculata_contig5049:535..1313+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATCATGCGTACAGGTAACCAGGCCTAGTGAACCATGGGAGTACAG
CGATGGAGCTGTGTACTTGCTGCGGGAGCTGTGCAGCGTGGACAGCGAGA
GGGGTGTGCTGCTGTTCGAGGAAATGGCAGACATCGCCCGGTTGACGCAG
TTCGTGCAGGCTGACTGTCTCCGCGAGACAATCTGGAAACAGGTGAAACT
AATATTTTTTATGCCCTGACGATATGGGTAGACAGACGCTGATTGACTTG
GCCTGATCGATGCTTCTCCGGATGATGTGGGTTGCGTCTTATTGTCCGGC
GCTCTGTTTTTTTTTTTTTTCTTTCCTTCCTTCCTTGTTGCGTTGCACGT
CCCCAATGGCAATTCAGGATGTGACATTATGTCGGGAGCTCGTGCGGTGT
GCTTTGTGCTGTATCCTGCTGCGTACAAATTCTTAGGGTTGTCTGATGCG
CGCCCCCCCTCCCCCCACAATCCACAGACCACAGGCTACTGCAGTGCCGA
TACCTAACGAATAAAGACACCTTCCTGCTTTGCATTTGCTCGCGCGCTAT
TATCGTCCAACTCCGTGGATCATGGCAATAATTCATAATTACTTAGTTGC
CCGCCATGGCCGAGGCTGTGGGGAAAAAGGTTTTCAAGCGACACCTGGAC
TTGTTCCTGAAGCCGCTATTCGACACGCTCTCTCGCATCACCACGAGCCA
GCTTGCTCGGCATGCGGCGGCGTCATGCGTCCGACAGCTGAGCGTGTTTG
TAGGCCCGTCCATTTTCAACGGACGCCTT

Coding sequence (CDS) from alignment at H-paniculata_contig5049:535..1313+

>mRNA_H-paniculata_contig5049.12311.1 ID=mRNA_H-paniculata_contig5049.12311.1|Name=mRNA_H-paniculata_contig5049.12311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig5049:535..1313+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATCATGCGTACAGGTAACCAGGCCTAGTGAACCATGGGAGTACAG
CGATGGAGCTGTGTACTTGCTGCGGGAGCTGTGCAGCGTGGACAGCGAGA
GGGGTGTGCTGCTGTTCGAGGAAATGGCAGACATCGCCCGGTTGACGCAG
TTCGTGCAGGCTGACTGTCTCCGCGAGACAATCTGGAAACAGATGTCATC
ATGCGTACAGGTAACCAGGCCTAGTGAACCATGGGAGTACAGCGATGGAG
CTGTGTACTTGCTGCGGGAGCTGTGCAGCGTGGACAGCGAGAGGGGTGTG
CTGCTGTTCGAGGAAATGGCAGACATCGCCCGGTTGACGCAGTTCGTGCA
GGCTGACTGTCTCCGCGAGACAATCTGGAAACAGTTGCCCGCCATGGCCG
AGGCTGTGGGGAAAAAGGTTTTCAAGCGACACCTGGACTTGTTCCTGAAG
CCGCTATTCGACACGCTCTCTCGCATCACCACGAGCCAGCTTGCTCGGCA
TGCGGCGGCGTCATGCGTCCGACAGCTGAGCGTGTTTGTAGGCCCGTCCA
TTTTCAACGGACGCCTTTTGCCCGCCATGGCCGAGGCTGTGGGGAAAAAG
GTTTTCAAGCGACACCTGGACTTGTTCCTGAAGCCGCTATTCGACACGCT
CTCTCGCATCACCACGAGCCAGCTTGCTCGGCATGCGGCGGCGTCATGCG
TCCGACAGCTGAGCGTGTTTGTAGGCCCGTCCATTTTCAACGGACGCCTT