mRNA_H-paniculata_contig5048.12308.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5048.12308.1
Unique NamemRNA_H-paniculata_contig5048.12308.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5048.12308.1 vs. uniprot
Match: D8LBG4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBG4_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 2.930e-50
Identity = 84/93 (90.32%), Postives = 86/93 (92.47%), Query Frame = 1
Query:    4 EDRYAQIERDNRLLLEKMSQIMRKGAVDNHNSTSKYAKSLNKEARKKELHKITRENQRILHAIQQADPFYDHVKWAEEAQQNEVYMRNICQWP 282
            EDRYAQIERDNRLLLEKMS IMRKG VDNHNSTSKY+KSLNK ARKKELHKIT ENQRILHAIQQADPFYDH+KWAEEAQQNE YMRNIC  P
Sbjct:   62 EDRYAQIERDNRLLLEKMSHIMRKGGVDNHNSTSKYSKSLNKGARKKELHKITTENQRILHAIQQADPFYDHIKWAEEAQQNEKYMRNICTMP 154          
BLAST of mRNA_H-paniculata_contig5048.12308.1 vs. uniprot
Match: A0A7S2V2P0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2P0_9STRA)

HSP 1 Score: 122 bits (305), Expect = 3.920e-33
Identity = 62/94 (65.96%), Postives = 77/94 (81.91%), Query Frame = 1
Query:    4 EDRYAQIERDNRLLLEKMSQIMRKGAVDNHNSTSKYAKSLNKEARKKELHKITRENQRILHAIQQADPFYDHVKWAEEAQQNEVYMRNICQWPQ 285
            EDR+A IERDNR+LLEKMS IMR+   DN N ++ YA SLNKEARK+EL KITRENQ IL  IQQ++P Y+H+KWAEEA++NE Y +NIC++ Q
Sbjct:   60 EDRFATIERDNRILLEKMSYIMRRNQFDNTNESTAYAHSLNKEARKRELQKITRENQGILRRIQQSEPHYNHMKWAEEARRNEEYKKNICEYQQ 153          
BLAST of mRNA_H-paniculata_contig5048.12308.1 vs. uniprot
Match: A0A7S3USY4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USY4_HETAK)

HSP 1 Score: 121 bits (304), Expect = 1.060e-32
Identity = 61/93 (65.59%), Postives = 76/93 (81.72%), Query Frame = 1
Query:    4 EDRYAQIERDNRLLLEKMSQIMRKGAVDNHNSTSKYAKSLNKEARKKELHKITRENQRILHAIQQADPFYDHVKWAEEAQQNEVYMRNICQWP 282
            EDR+A IERDNR+LLEKMS IMR+   DN N +++YA SLNKEARK+EL +ITRENQ IL  IQQA+P YDH+ W EEA++ E Y+RNIC++P
Sbjct:   60 EDRFATIERDNRILLEKMSYIMRRNQFDNVNESTQYAHSLNKEARKRELQRITRENQGILRRIQQAEPHYDHLAWEEEARKTEAYVRNICEFP 152          
BLAST of mRNA_H-paniculata_contig5048.12308.1 vs. uniprot
Match: F0Y0R8_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0R8_AURAN)

HSP 1 Score: 111 bits (277), Expect = 2.300e-29
Identity = 59/93 (63.44%), Postives = 72/93 (77.42%), Query Frame = 1
Query:    4 EDRYAQIERDNRLLLEKMSQIMRKGAVDNHNSTSKYAKSLNKEARKKELHKITRENQRILHAIQQADPFYDHVKWAEEAQQNEVYMRNICQWP 282
            E+RYA+IERDNRLLLEKMS IMR  ++DN N    YA SLN+E RK+EL +ITRENQ IL  IQ A+P YDH+ WAE  +Q+E YM+NIC+ P
Sbjct:   52 EERYAEIERDNRLLLEKMSYIMRHSSLDNDNQMQ-YAHSLNREQRKRELQRITRENQNILGRIQAAEPTYDHLAWAEHEKQHEDYMKNICELP 143          
BLAST of mRNA_H-paniculata_contig5048.12308.1 vs. uniprot
Match: A0A8K1CSC9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSC9_PYTOL)

HSP 1 Score: 107 bits (267), Expect = 2.000e-27
Identity = 54/94 (57.45%), Postives = 73/94 (77.66%), Query Frame = 1
Query:    4 EDRYAQIERDNRLLLEKMSQIMRKGAVDNHNSTSKYAKSLNKEARKKELHKITRENQRILHAIQQADPFYDHVKWAEEAQQNEVYMRNICQWPQ 285
            E+RYA+IER+NR+LLEKMS IM+   +DN N +  Y+ SLNKE+RK+EL KIT ENQ IL  IQ  +P YDH++WAEEA++N+ Y  NI ++P+
Sbjct:   60 EERYAEIERENRILLEKMSHIMQNETLDNKNQSITYSHSLNKESRKRELQKITAENQAILRRIQMREPTYDHLQWAEEAKRNDQYAANIREYPE 153          
BLAST of mRNA_H-paniculata_contig5048.12308.1 vs. uniprot
Match: A0A3R7GA00_9STRA (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=A0A3R7GA00_9STRA)

HSP 1 Score: 102 bits (255), Expect = 7.670e-26
Identity = 53/93 (56.99%), Postives = 70/93 (75.27%), Query Frame = 1
Query:    4 EDRYAQIERDNRLLLEKMSQIMRKGAVDNHNSTSKYAKSLNKEARKKELHKITRENQRILHAIQQADPFYDHVKWAEEAQQNEVYMRNICQWP 282
            E+RYA IER+NR+LLEKMS IM+  ++DN N +  Y+ SLNKE RK+EL KIT ENQ IL  IQ  +P YDH++W E+A++NE Y  NI ++P
Sbjct:   60 EERYAAIERENRILLEKMSTIMQGESIDNKNQSLTYSHSLNKEQRKRELQKITSENQAILRRIQMREPTYDHMQWEEDAKKNERYAANIREYP 152          
BLAST of mRNA_H-paniculata_contig5048.12308.1 vs. uniprot
Match: A0A836CD52_9STRA (KIAA1430-like protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD52_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.670e-25
Identity = 54/97 (55.67%), Postives = 74/97 (76.29%), Query Frame = 1
Query:    4 EDRYAQIERDNRLLLEKMSQIMRK----GAVDNHNSTSKYAKSLNKEARKKELHKITRENQRILHAIQQADPFYDHVKWAEEAQQNEVYMRNICQWP 282
            EDRYAQIERDNR+LLEKMS IMR        ++  + ++YAKSLN+E+RK+EL +ITREN RIL AIQ ++P Y+  +W  EA+ +E Y++NIC++P
Sbjct:   61 EDRYAQIERDNRILLEKMSTIMRSRPTVALAESVEAQARYAKSLNRESRKRELQRITRENARILAAIQSSEPVYNSGQWEREARDHERYLKNICEYP 157          
BLAST of mRNA_H-paniculata_contig5048.12308.1 vs. uniprot
Match: A0A3F2S3E4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3E4_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.790e-25
Identity = 54/93 (58.06%), Postives = 70/93 (75.27%), Query Frame = 1
Query:    4 EDRYAQIERDNRLLLEKMSQIMRKGAVDNHNSTSKYAKSLNKEARKKELHKITRENQRILHAIQQADPFYDHVKWAEEAQQNEVYMRNICQWP 282
            E+RYA IER+NR+LLEKMS IM+  ++DN N +  Y+ SLNKE RK+EL KIT ENQ IL  IQ  +P YDHV+W E+A++NE Y  NI ++P
Sbjct:   60 EERYAAIERENRILLEKMSTIMQGESIDNKNQSLTYSHSLNKEQRKRELQKITSENQAILRRIQMREPTYDHVQWEEDAKKNERYAANIREYP 152          
BLAST of mRNA_H-paniculata_contig5048.12308.1 vs. uniprot
Match: G5AFG8_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G5AFG8_PHYSP)

HSP 1 Score: 101 bits (251), Expect = 5.190e-25
Identity = 53/93 (56.99%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    4 EDRYAQIERDNRLLLEKMSQIMRKGAVDNHNSTSKYAKSLNKEARKKELHKITRENQRILHAIQQADPFYDHVKWAEEAQQNEVYMRNICQWP 282
            E+RYA+IER+NR+LLEKMS IM+   +DN N +  Y+ SLNK  RK+EL KIT ENQ IL  IQ  +P YDHV+W E+A++NE Y  NI ++P
Sbjct:   60 EERYAEIERENRILLEKMSTIMQGETLDNKNQSIVYSHSLNKGQRKRELQKITSENQAILRRIQMREPTYDHVQWEEDAKKNERYANNIREYP 152          
BLAST of mRNA_H-paniculata_contig5048.12308.1 vs. uniprot
Match: A0A0N7L428_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L428_PLAHL)

HSP 1 Score: 101 bits (251), Expect = 5.190e-25
Identity = 53/93 (56.99%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    4 EDRYAQIERDNRLLLEKMSQIMRKGAVDNHNSTSKYAKSLNKEARKKELHKITRENQRILHAIQQADPFYDHVKWAEEAQQNEVYMRNICQWP 282
            EDRYA+IER+NR+LLEKM+ IM+   +DN N +  YA SLNK  RK+EL +IT ENQ IL  IQ  +P YDHV+W E+A++NE Y  NI ++P
Sbjct:   60 EDRYAEIERENRILLEKMTMIMQGEKLDNKNQSVAYAHSLNKGRRKRELQRITTENQAILRRIQMREPTYDHVQWEEDAKKNERYAANIREFP 152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5048.12308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBG4_ECTSI2.930e-5090.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V2P0_9STRA3.920e-3365.96Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3USY4_HETAK1.060e-3265.59Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0Y0R8_AURAN2.300e-2963.44Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A8K1CSC9_PYTOL2.000e-2757.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7GA00_9STRA7.670e-2656.99Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
A0A836CD52_9STRA2.670e-2555.67KIAA1430-like protein-domain-containing protein n=... [more]
A0A3F2S3E4_9STRA2.790e-2558.06Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
G5AFG8_PHYSP5.190e-2556.99Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A0N7L428_PLAHL5.190e-2556.99Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5048contigH-paniculata_contig5048:2949..3788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue1.9e-38
Seed eggNOG ortholog2880.D8LBG4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.KIAA1430 homologue
EggNOG OGs2ANFN@1,2RZE9@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930483.1712887-CDS-H-paniculata_contig5048:2948..31221622930483.1712887-CDS-H-paniculata_contig5048:2948..3122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5048 2949..3122 +
1691481312.205536-CDS-H-paniculata_contig5048:2948..31221691481312.205536-CDS-H-paniculata_contig5048:2948..3122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5048 2949..3122 +
1622930483.188056-CDS-H-paniculata_contig5048:3674..37881622930483.188056-CDS-H-paniculata_contig5048:3674..3788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5048 3675..3788 +
1691481312.2207553-CDS-H-paniculata_contig5048:3674..37881691481312.2207553-CDS-H-paniculata_contig5048:3674..3788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5048 3675..3788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5048.12308.1prot_H-paniculata_contig5048.12308.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5048 2949..3788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5048.12308.1

>prot_H-paniculata_contig5048.12308.1 ID=prot_H-paniculata_contig5048.12308.1|Name=mRNA_H-paniculata_contig5048.12308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
QEDRYAQIERDNRLLLEKMSQIMRKGAVDNHNSTSKYAKSLNKEARKKEL
HKITRENQRILHAIQQADPFYDHVKWAEEAQQNEVYMRNICQWPQA
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mRNA from alignment at H-paniculata_contig5048:2949..3788+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5048.12308.1 ID=mRNA_H-paniculata_contig5048.12308.1|Name=mRNA_H-paniculata_contig5048.12308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=840bp|location=Sequence derived from alignment at H-paniculata_contig5048:2949..3788+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGGATCGATACGCTCAAATCGAGCGAGATAATCGCCTTTTGCTGGA GAAGATGTCTCAAATCATGCGCAAAGGTGCCGTCGACAATCACAATAGTA CATCAAAATACGCGAAATCTCTCAACAAGGAGGCGCGCAAGAAGGAGCTA CATAAAATCACTAGGGAAAATCAGGTGCGTCGATGGAAAATGCAAGACAG TGAAACGGGTATAAGAGAAGGTGGTGACAAGCCGCAAGACCCTCTCAATT CTTTATCCTCTCTTATTTGATATGAGAGATAGTATGTTAGATCCGTCAAA AGTAGTTCTTGGAGATTGTAAATGGTGTCGGACAAACACACTCGTGGTTA TTTTCGTACATTGAGCAGGAAAGAGCCTGTGTGAATGGGCCCGATTGAAA CCCAGGTGGTTTCAAGCAGATGGTGAACAATACTGGTCATTTTCTACGTC CCTGCTCCATTTAAGGAATGTTTGCGTTCAAGCCGTTGAATGAAGACGGC AGATAAAAGCGATCAACGTACTAAAATTGCGCTGAAATGTTGTTCACACC ACATATTGGATGGCTGAGAGAAGGGCGACGCAAATCCACTAATAGCAGTC TACGAACGAAAATGTTCATCATCCTGTCGTTATGGACCCCACGGCGATAC AACCACATTTCGTCCCCGCAAAAGGTGGACTAACACTTGTCCGCTCTTTA CCGTTGTGCTCATGTTCTTCCACTAGCGTATTCTCCACGCAATTCAACAG GCGGATCCATTCTACGACCATGTCAAGTGGGCCGAAGAGGCCCAGCAAAA TGAGGTGTACATGCGCAACATTTGTCAATGGCCGCAAGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig5048:2949..3788+

>mRNA_H-paniculata_contig5048.12308.1 ID=mRNA_H-paniculata_contig5048.12308.1|Name=mRNA_H-paniculata_contig5048.12308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig5048:2949..3788+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGGATCGATACGCTCAAATCGAGCGAGATAATCGCCTTTTGCTGGA
GAAGATGTCTCAAATCATGCGCAAAGGTGCCGTCGACAATCACAATAGTA
CATCAAAATACGCGAAATCTCTCAACAAGGAGGCGCGCAAGAAGGAGCTA
CATAAAATCACTAGGGAAAATCAGCAGGAGGATCGATACGCTCAAATCGA
GCGAGATAATCGCCTTTTGCTGGAGAAGATGTCTCAAATCATGCGCAAAG
GTGCCGTCGACAATCACAATAGTACATCAAAATACGCGAAATCTCTCAAC
AAGGAGGCGCGCAAGAAGGAGCTACATAAAATCACTAGGGAAAATCAGCG
TATTCTCCACGCAATTCAACAGGCGGATCCATTCTACGACCATGTCAAGT
GGGCCGAAGAGGCCCAGCAAAATGAGGTGTACATGCGCAACATTTGTCAA
TGGCCGCAAGCTCGTATTCTCCACGCAATTCAACAGGCGGATCCATTCTA
CGACCATGTCAAGTGGGCCGAAGAGGCCCAGCAAAATGAGGTGTACATGC
GCAACATTTGTCAATGGCCGCAAGCT
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