mRNA_H-paniculata_contig50476.12307.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50476.12307.1
Unique NamemRNA_H-paniculata_contig50476.12307.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig50476.12307.1 vs. uniprot
Match: A0A6H5KY21_9PHAE (CBF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY21_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.990e-17
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 RFYAALYIKLLSPDIAGASNPVLFLNLVYKAMRADDVDSSRVTAFAKRLLQV 156
            RFYAALY KLLSPD+ GASNPVLFLNLVYKA++AD  + +R  AFAKRLLQV
Sbjct:  139 RFYAALYAKLLSPDLGGASNPVLFLNLVYKAIKAD-TEEARAAAFAKRLLQV 189
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BLAST of mRNA_H-paniculata_contig50476.12307.1 vs. uniprot
Match: D8LPZ6_ECTSI (CBF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 9.350e-15
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 RFYAALYIKLLSPDIAGASNPVLFLNLVYKAMRADDVDSSRVTAFAKRLLQV 156
            RFYAALY KLLS D+ GASNPVLFLNLVYKA++AD  + +R  AFAKRLLQV
Sbjct:  664 RFYAALYAKLLSSDLGGASNPVLFLNLVYKAIKAD-TEEARAAAFAKRLLQV 714
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BLAST of mRNA_H-paniculata_contig50476.12307.1 vs. uniprot
Match: A0A7K6AJQ4_UPUEP (CEBPZ protein (Fragment) n=1 Tax=Upupa epops TaxID=57439 RepID=A0A7K6AJQ4_UPUEP)

HSP 1 Score: 64.7 bits (156), Expect = 8.000e-11
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 RFYAALYIKLLSPDIAGASNPVLFLNLVYKAMRADDVDSSRVTAFAKRLLQV 156
            R+YAALY KLL P +A  S P LFLNLVYK+++AD V S RV AF KRLLQV
Sbjct:  491 RYYAALYRKLLDPALASCSKPSLFLNLVYKSLKADVV-SRRVKAFVKRLLQV 541
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BLAST of mRNA_H-paniculata_contig50476.12307.1 vs. uniprot
Match: A0A7S3LPV8_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LPV8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.040e-10
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 RFYAALYIKLLSPDIAGASNPVLFLNLVYKAMRADDVDSSRVTAFAKRLLQV 156
            RFY ALY KLLSP++  +S   LFLNL+Y+AM+AD V  +R+ AFAKRLLQV
Sbjct:  102 RFYRALYAKLLSPELLSSSKQTLFLNLLYRAMKAD-VTLNRLRAFAKRLLQV 152
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BLAST of mRNA_H-paniculata_contig50476.12307.1 vs. uniprot
Match: A0A8C4R5G3_EPTBU (CCAAT enhancer binding protein zeta n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4R5G3_EPTBU)

HSP 1 Score: 63.5 bits (153), Expect = 2.040e-10
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 RFYAALYIKLLSPDIAGASNPVLFLNLVYKAMRADDVDSSRVTAFAKRLLQV 156
            RFY ALY KLL P ++  S P LFLNL+YK+M+AD + +SRV AF KRLLQV
Sbjct:  555 RFYTALYKKLLDPQLSSYSKPALFLNLLYKSMKAD-LAASRVKAFMKRLLQV 605
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BLAST of mRNA_H-paniculata_contig50476.12307.1 vs. uniprot
Match: A0A8C4R8A2_EPTBU (CCAAT enhancer binding protein zeta n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4R8A2_EPTBU)

HSP 1 Score: 63.5 bits (153), Expect = 2.040e-10
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 RFYAALYIKLLSPDIAGASNPVLFLNLVYKAMRADDVDSSRVTAFAKRLLQV 156
            RFY ALY KLL P ++  S P LFLNL+YK+M+AD + +SRV AF KRLLQV
Sbjct:  555 RFYTALYKKLLDPQLSSYSKPALFLNLLYKSMKAD-LAASRVKAFMKRLLQV 605
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BLAST of mRNA_H-paniculata_contig50476.12307.1 vs. uniprot
Match: A0A091RL87_9GRUI (CCAAT/enhancer-binding protein zeta (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A091RL87_9GRUI)

HSP 1 Score: 63.2 bits (152), Expect = 2.790e-10
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 RFYAALYIKLLSPDIAGASNPVLFLNLVYKAMRADDVDSSRVTAFAKRLLQV 156
            R+YAALY KLL P +A  S P +FLNLVYK+++AD V S RV AF KRLLQV
Sbjct:  531 RYYAALYKKLLDPALATCSKPSMFLNLVYKSLKADVV-SRRVKAFVKRLLQV 581
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BLAST of mRNA_H-paniculata_contig50476.12307.1 vs. uniprot
Match: A0A8C4UZA2_FALTI (CCAAT enhancer binding protein zeta n=1 Tax=Falco tinnunculus TaxID=100819 RepID=A0A8C4UZA2_FALTI)

HSP 1 Score: 63.2 bits (152), Expect = 2.790e-10
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 RFYAALYIKLLSPDIAGASNPVLFLNLVYKAMRADDVDSSRVTAFAKRLLQV 156
            R+YAALY KLL P +A  S P +FLNLVYK+++AD V S RV AF KRLLQV
Sbjct:  546 RYYAALYKKLLDPALATCSKPSMFLNLVYKSLKADVV-SRRVKAFVKRLLQV 596
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BLAST of mRNA_H-paniculata_contig50476.12307.1 vs. uniprot
Match: UPI001ADE420F (CCAAT/enhancer-binding protein zeta isoform X2 n=1 Tax=Falco naumanni TaxID=148594 RepID=UPI001ADE420F)

HSP 1 Score: 63.2 bits (152), Expect = 2.790e-10
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 RFYAALYIKLLSPDIAGASNPVLFLNLVYKAMRADDVDSSRVTAFAKRLLQV 156
            R+YAALY KLL P +A  S P +FLNLVYK+++AD V S RV AF KRLLQV
Sbjct:  546 RYYAALYKKLLDPALATCSKPSMFLNLVYKSLKADVV-SRRVKAFVKRLLQV 596
[Close]
BLAST of mRNA_H-paniculata_contig50476.12307.1 vs. uniprot
Match: UPI001ADE2C82 (CCAAT/enhancer-binding protein zeta isoform X1 n=4 Tax=Falco TaxID=8952 RepID=UPI001ADE2C82)

HSP 1 Score: 63.2 bits (152), Expect = 2.790e-10
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 RFYAALYIKLLSPDIAGASNPVLFLNLVYKAMRADDVDSSRVTAFAKRLLQV 156
            R+YAALY KLL P +A  S P +FLNLVYK+++AD V S RV AF KRLLQV
Sbjct:  546 RYYAALYKKLLDPALATCSKPSMFLNLVYKSLKADVV-SRRVKAFVKRLLQV 596
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50476.12307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY21_9PHAE5.990e-1776.92CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LPZ6_ECTSI9.350e-1575.00CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7K6AJQ4_UPUEP8.000e-1167.31CEBPZ protein (Fragment) n=1 Tax=Upupa epops TaxID... [more]
A0A7S3LPV8_9STRA2.040e-1063.46Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A8C4R5G3_EPTBU2.040e-1063.46CCAAT enhancer binding protein zeta n=1 Tax=Eptatr... [more]
A0A8C4R8A2_EPTBU2.040e-1063.46CCAAT enhancer binding protein zeta n=1 Tax=Eptatr... [more]
A0A091RL87_9GRUI2.790e-1065.38CCAAT/enhancer-binding protein zeta (Fragment) n=3... [more]
A0A8C4UZA2_FALTI2.790e-1065.38CCAAT enhancer binding protein zeta n=1 Tax=Falco ... [more]
UPI001ADE420F2.790e-1065.38CCAAT/enhancer-binding protein zeta isoform X2 n=1... [more]
UPI001ADE2C822.790e-1065.38CCAAT/enhancer-binding protein zeta isoform X1 n=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50476contigH-paniculata_contig50476:978..1136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue4.9e-12
Seed eggNOG ortholog2880.D8LPZ6
Preferred nameCEBPZ
KEGG koko:K14572,ko:K14832
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000027,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005911,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009553,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040008,GO:0042254,GO:0042255,GO:0042273,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0048229,GO:0048518,GO:0048522,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,COG5593@1,KOG1808@2759,KOG2038@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930482.878244-CDS-H-paniculata_contig50476:977..11361622930482.878244-CDS-H-paniculata_contig50476:977..1136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50476 978..1136 +
1691481312.0664876-CDS-H-paniculata_contig50476:977..11361691481312.0664876-CDS-H-paniculata_contig50476:977..1136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50476 978..1136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50476.12307.1prot_H-paniculata_contig50476.12307.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50476 978..1136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50476.12307.1

>prot_H-paniculata_contig50476.12307.1 ID=prot_H-paniculata_contig50476.12307.1|Name=mRNA_H-paniculata_contig50476.12307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
RFYAALYIKLLSPDIAGASNPVLFLNLVYKAMRADDVDSSRVTAFAKRLL
QV*
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mRNA from alignment at H-paniculata_contig50476:978..1136+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50476.12307.1 ID=mRNA_H-paniculata_contig50476.12307.1|Name=mRNA_H-paniculata_contig50476.12307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig50476:978..1136+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTTTATGCTGCCCTGTACATCAAGCTGCTGTCGCCCGATATCGCCGG
CGCTTCGAACCCCGTCCTCTTCCTCAACCTGGTGTACAAGGCCATGCGCG
CGGACGACGTGGATAGCTCCAGAGTCACCGCATTCGCGAAGCGTTTGCTG
CAGGTATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig50476:978..1136+

>mRNA_H-paniculata_contig50476.12307.1 ID=mRNA_H-paniculata_contig50476.12307.1|Name=mRNA_H-paniculata_contig50476.12307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig50476:978..1136+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTTTATGCTGCCCTGTACATCAAGCTGCTGTCGCCCGATATCGCCGG
CGCTTCGAACCCCGTCCTCTTCCTCAACCTGGTGTACAAGGCCATGCGCG
CGGACGACGTGGATAGCTCCAGAGTCACCGCATTCGCGAAGCGTTTGCTG
CAGGTATAGAGGTTTTATGCTGCCCTGTACATCAAGCTGCTGTCGCCCGA
TATCGCCGGCGCTTCGAACCCCGTCCTCTTCCTCAACCTGGTGTACAAGG
CCATGCGCGCGGACGACGTGGATAGCTCCAGAGTCACCGCATTCGCGAAG
CGTTTGCTGCAGGTATAG
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