mRNA_H-paniculata_contig50448.12303.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 7.270e-18 Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 1
Query: 1 MGATRVQRRITPSLSFHHKKNRVDFTLDQVARDRTTFKTGFNTIHVDEAWFYLIRDKEKVRMFPGEKI-GSIKVQHKRHIPKVMFICAMSRP 273
+GA + RI PSLS K++R+DF D+V + N +H+DE+WFYL+R+KEKVR+F GE + G +V H+ H+PK+M I A +RP
Sbjct: 112 LGAAKKAGRIKPSLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARP 203
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: A0A1R3I5M9_9ROSI (Uncharacterized protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3I5M9_9ROSI) HSP 1 Score: 69.7 bits (169), Expect = 6.220e-12 Identity = 33/82 (40.24%), Postives = 50/82 (60.98%), Query Frame = 1
Query: 28 ITPSLSFHHKKNRVDFTLDQVARDRTTFKTGFNTIHVDEAWFYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP 273
+ P+L+F +K R+ F L + + +TFK ++TIH+DE WFYLIR + P E+ + K IPKVMF+ A++RP
Sbjct: 139 LRPNLTFENKIARLRFCLKMLESNDSTFKGMYDTIHIDEKWFYLIRKSVNYYLLPDEEEPHRTCKSKNFIPKVMFLAAVARP 220
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: UPI001C27B967 (uncharacterized protein LOC121796853 n=2 Tax=Salvia splendens TaxID=180675 RepID=UPI001C27B967) HSP 1 Score: 67.0 bits (162), Expect = 3.130e-11 Identity = 32/86 (37.21%), Postives = 52/86 (60.47%), Query Frame = 1
Query: 28 ITPSLSFHHKKNRVDFTLDQVARDRTT----FKTGFNTIHVDEAWFYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP 273
I P L+ +K R+ FT++ + DR F+ +NTIH+DE WFY+ + ++ + PGE+ ++K+ I K+MF+CAM RP
Sbjct: 126 IKPGLTAANKLLRLRFTVESLQLDRILNKIKFRNMYNTIHIDEKWFYMTKGAQRFYLAPGEEEPHRTCKNKQFISKIMFMCAMCRP 211
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: UPI000B8B4604 (uncharacterized protein LOC110789338 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8B4604) HSP 1 Score: 67.0 bits (162), Expect = 3.240e-11 Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 1
Query: 28 ITPSLSFHHKKNRVDFTLDQVAR----DRTTFKTGFNTIHVDEAWFYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP 273
I PSL+ H++ R+++ L + D F+ +NTIH+DE WFY+ + K+K + GEK + KR I KVMF+ A++RP
Sbjct: 102 IKPSLTDHNRVTRLEWCLQAIDANTIDDNPCFEDMYNTIHIDEKWFYMTKGKQKYYLLAGEKRPYRHCKSKRFISKVMFLAAVARP 187
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: UPI0006A6D7E0 (uncharacterized protein LOC106302859 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A6D7E0) HSP 1 Score: 65.9 bits (159), Expect = 4.450e-11 Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 1
Query: 28 ITPSLSFHHKKNRVDFTLDQVARDRTTFKTGF----NTIHVDEAWFYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP 273
I P LS + + R+ F L + +D + F N++H+DE WFY+ + EK + P E++ Q K HI KVMF+ AM+RP
Sbjct: 26 IKPGLSDENMRARLKFCLSMLEKDSLAHEPKFVDMYNSVHIDEKWFYMTKKTEKYYVVPEEEVPHRTCQSKNHITKVMFLAAMARP 111
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: UPI000B78B07A (uncharacterized protein LOC110692558 n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B78B07A) HSP 1 Score: 67.0 bits (162), Expect = 5.500e-11 Identity = 29/82 (35.37%), Postives = 50/82 (60.98%), Query Frame = 1
Query: 28 ITPSLSFHHKKNRVDFTLDQVARDRTTFKTGFNTIHVDEAWFYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP 273
+ P+L+ ++ K R+ + L + +D F +NTIH+DE WFY+ + ++ + PGE + KR + KVMF+CA++RP
Sbjct: 130 LKPALTENNIKERLKWCLKAIDQDNGMFNDMYNTIHLDEKWFYMTKGTQRYYLLPGETQPYRTCKSKRFVTKVMFLCAVARP 211
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: A0A397F7W8_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F7W8_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 6.340e-11 Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 1
Query: 28 ITPSLSFHHKKNRVDFTLDQVARDRTTFK---TGFNTIHVDEAWFYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP 273
+ PSL+ +K +++ LDQV RD K T ++T+HVDE WF++ R + KV PGEKI + KRH+ KVMF+ A++RP
Sbjct: 65 VKPSLADFNKVCCLNWVLDQV-RDINGEKFIDTMYDTVHVDEKWFFMTRLQRKVIGAPGEKIKQRTCKFKRHLLKVMFLSAVARP 148
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: A0A1R3G118_9ROSI (Uncharacterized protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3G118_9ROSI) HSP 1 Score: 65.9 bits (159), Expect = 1.340e-10 Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 1
Query: 28 ITPSLSFHHKKNRVDFTLDQVARDRTTFKTGFNTIHVDEAWFYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP 273
+ P+L+ K R+ F L ++ + +TFK ++TIH+DE WFYL + + P E+ + K IPKVMF+ A++RP
Sbjct: 231 LRPNLTLEKKITRLRFCLKKLESNDSTFKDMYDTIHIDEKWFYLTKKSVNYYLLPDEEEPHRNCKSKNFIPKVMFLAALARP 312
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: UPI000B8B1A17 (uncharacterized protein LOC110792073 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8B1A17) HSP 1 Score: 64.7 bits (156), Expect = 3.610e-10 Identity = 32/86 (37.21%), Postives = 51/86 (59.30%), Query Frame = 1
Query: 28 ITPSLSFHHKKNRVDFTLDQVAR----DRTTFKTGFNTIHVDEAWFYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP 273
I PSL+ H+K R+ + L ++ + F+ +NTIH+DE WFY+ + K++ + GEK + KR I KVMF+ A++RP
Sbjct: 129 IKPSLTDHNKITRLHWCLQEIDANSIDESPCFEDMYNTIHIDEKWFYMTKGKQRYYLLAGEKRPYRHCKSKRFIAKVMFLAAVARP 214
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: UPI001C2558BC (uncharacterized protein LOC121796902 n=3 Tax=Salvia splendens TaxID=180675 RepID=UPI001C2558BC) HSP 1 Score: 64.7 bits (156), Expect = 3.620e-10 Identity = 31/86 (36.05%), Postives = 53/86 (61.63%), Query Frame = 1
Query: 28 ITPSLSFHHKKNRVDFTLDQVARDRTT----FKTGFNTIHVDEAWFYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP 273
I P+L+ +K R+ FT++ + DR F+ +NTIH+DE WFY+ + ++ + PGE+ ++K+ IPK+MF+ A+ RP
Sbjct: 126 IKPNLTAANKLLRLRFTVESLELDRILNKIRFRNMYNTIHIDEKWFYMTKGAQRFYLAPGEQEPHRTCKNKQFIPKIMFMYAVCRP 211 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig50448.12303.1 >prot_H-paniculata_contig50448.12303.1 ID=prot_H-paniculata_contig50448.12303.1|Name=mRNA_H-paniculata_contig50448.12303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp MGATRVQRRITPSLSFHHKKNRVDFTLDQVARDRTTFKTGFNTIHVDEAWback to top mRNA from alignment at H-paniculata_contig50448:733..1005- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig50448.12303.1 ID=mRNA_H-paniculata_contig50448.12303.1|Name=mRNA_H-paniculata_contig50448.12303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=273bp|location=Sequence derived from alignment at H-paniculata_contig50448:733..1005- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig50448:733..1005- >mRNA_H-paniculata_contig50448.12303.1 ID=mRNA_H-paniculata_contig50448.12303.1|Name=mRNA_H-paniculata_contig50448.12303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig50448:733..1005- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |