mRNA_H-paniculata_contig50448.12303.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50448.12303.1
Unique NamemRNA_H-paniculata_contig50448.12303.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 7.270e-18
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 1
Query:    1 MGATRVQRRITPSLSFHHKKNRVDFTLDQVARDRTTFKTGFNTIHVDEAWFYLIRDKEKVRMFPGEKI-GSIKVQHKRHIPKVMFICAMSRP 273
            +GA +   RI PSLS   K++R+DF  D+V      +    N +H+DE+WFYL+R+KEKVR+F GE + G  +V H+ H+PK+M I A +RP
Sbjct:  112 LGAAKKAGRIKPSLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARP 203          
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: A0A1R3I5M9_9ROSI (Uncharacterized protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3I5M9_9ROSI)

HSP 1 Score: 69.7 bits (169), Expect = 6.220e-12
Identity = 33/82 (40.24%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   28 ITPSLSFHHKKNRVDFTLDQVARDRTTFKTGFNTIHVDEAWFYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP 273
            + P+L+F +K  R+ F L  +  + +TFK  ++TIH+DE WFYLIR      + P E+      + K  IPKVMF+ A++RP
Sbjct:  139 LRPNLTFENKIARLRFCLKMLESNDSTFKGMYDTIHIDEKWFYLIRKSVNYYLLPDEEEPHRTCKSKNFIPKVMFLAAVARP 220          
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: UPI001C27B967 (uncharacterized protein LOC121796853 n=2 Tax=Salvia splendens TaxID=180675 RepID=UPI001C27B967)

HSP 1 Score: 67.0 bits (162), Expect = 3.130e-11
Identity = 32/86 (37.21%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   28 ITPSLSFHHKKNRVDFTLDQVARDRTT----FKTGFNTIHVDEAWFYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP 273
            I P L+  +K  R+ FT++ +  DR      F+  +NTIH+DE WFY+ +  ++  + PGE+      ++K+ I K+MF+CAM RP
Sbjct:  126 IKPGLTAANKLLRLRFTVESLQLDRILNKIKFRNMYNTIHIDEKWFYMTKGAQRFYLAPGEEEPHRTCKNKQFISKIMFMCAMCRP 211          
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: UPI000B8B4604 (uncharacterized protein LOC110789338 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8B4604)

HSP 1 Score: 67.0 bits (162), Expect = 3.240e-11
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   28 ITPSLSFHHKKNRVDFTLDQVAR----DRTTFKTGFNTIHVDEAWFYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP 273
            I PSL+ H++  R+++ L  +      D   F+  +NTIH+DE WFY+ + K+K  +  GEK      + KR I KVMF+ A++RP
Sbjct:  102 IKPSLTDHNRVTRLEWCLQAIDANTIDDNPCFEDMYNTIHIDEKWFYMTKGKQKYYLLAGEKRPYRHCKSKRFISKVMFLAAVARP 187          
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: UPI0006A6D7E0 (uncharacterized protein LOC106302859 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A6D7E0)

HSP 1 Score: 65.9 bits (159), Expect = 4.450e-11
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 1
Query:   28 ITPSLSFHHKKNRVDFTLDQVARDRTTFKTGF----NTIHVDEAWFYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP 273
            I P LS  + + R+ F L  + +D    +  F    N++H+DE WFY+ +  EK  + P E++     Q K HI KVMF+ AM+RP
Sbjct:   26 IKPGLSDENMRARLKFCLSMLEKDSLAHEPKFVDMYNSVHIDEKWFYMTKKTEKYYVVPEEEVPHRTCQSKNHITKVMFLAAMARP 111          
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: UPI000B78B07A (uncharacterized protein LOC110692558 n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B78B07A)

HSP 1 Score: 67.0 bits (162), Expect = 5.500e-11
Identity = 29/82 (35.37%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   28 ITPSLSFHHKKNRVDFTLDQVARDRTTFKTGFNTIHVDEAWFYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP 273
            + P+L+ ++ K R+ + L  + +D   F   +NTIH+DE WFY+ +  ++  + PGE       + KR + KVMF+CA++RP
Sbjct:  130 LKPALTENNIKERLKWCLKAIDQDNGMFNDMYNTIHLDEKWFYMTKGTQRYYLLPGETQPYRTCKSKRFVTKVMFLCAVARP 211          
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: A0A397F7W8_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F7W8_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.340e-11
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   28 ITPSLSFHHKKNRVDFTLDQVARDRTTFK---TGFNTIHVDEAWFYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP 273
            + PSL+  +K   +++ LDQV RD    K   T ++T+HVDE WF++ R + KV   PGEKI     + KRH+ KVMF+ A++RP
Sbjct:   65 VKPSLADFNKVCCLNWVLDQV-RDINGEKFIDTMYDTVHVDEKWFFMTRLQRKVIGAPGEKIKQRTCKFKRHLLKVMFLSAVARP 148          
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: A0A1R3G118_9ROSI (Uncharacterized protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3G118_9ROSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.340e-10
Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 1
Query:   28 ITPSLSFHHKKNRVDFTLDQVARDRTTFKTGFNTIHVDEAWFYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP 273
            + P+L+   K  R+ F L ++  + +TFK  ++TIH+DE WFYL +      + P E+      + K  IPKVMF+ A++RP
Sbjct:  231 LRPNLTLEKKITRLRFCLKKLESNDSTFKDMYDTIHIDEKWFYLTKKSVNYYLLPDEEEPHRNCKSKNFIPKVMFLAALARP 312          
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: UPI000B8B1A17 (uncharacterized protein LOC110792073 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8B1A17)

HSP 1 Score: 64.7 bits (156), Expect = 3.610e-10
Identity = 32/86 (37.21%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   28 ITPSLSFHHKKNRVDFTLDQVAR----DRTTFKTGFNTIHVDEAWFYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP 273
            I PSL+ H+K  R+ + L ++      +   F+  +NTIH+DE WFY+ + K++  +  GEK      + KR I KVMF+ A++RP
Sbjct:  129 IKPSLTDHNKITRLHWCLQEIDANSIDESPCFEDMYNTIHIDEKWFYMTKGKQRYYLLAGEKRPYRHCKSKRFIAKVMFLAAVARP 214          
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Match: UPI001C2558BC (uncharacterized protein LOC121796902 n=3 Tax=Salvia splendens TaxID=180675 RepID=UPI001C2558BC)

HSP 1 Score: 64.7 bits (156), Expect = 3.620e-10
Identity = 31/86 (36.05%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   28 ITPSLSFHHKKNRVDFTLDQVARDRTT----FKTGFNTIHVDEAWFYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP 273
            I P+L+  +K  R+ FT++ +  DR      F+  +NTIH+DE WFY+ +  ++  + PGE+      ++K+ IPK+MF+ A+ RP
Sbjct:  126 IKPNLTAANKLLRLRFTVESLELDRILNKIRFRNMYNTIHIDEKWFYMTKGAQRFYLAPGEQEPHRTCKNKQFIPKIMFMYAVCRP 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50448.12303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE7.270e-1845.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1R3I5M9_9ROSI6.220e-1240.24Uncharacterized protein n=1 Tax=Corchorus olitoriu... [more]
UPI001C27B9673.130e-1137.21uncharacterized protein LOC121796853 n=2 Tax=Salvi... [more]
UPI000B8B46043.240e-1138.37uncharacterized protein LOC110789338 n=1 Tax=Spina... [more]
UPI0006A6D7E04.450e-1137.21uncharacterized protein LOC106302859 n=1 Tax=Brass... [more]
UPI000B78B07A5.500e-1135.37uncharacterized protein LOC110692558 n=2 Tax=Cheno... [more]
A0A397F7W8_9STRA6.340e-1143.53Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A1R3G118_9ROSI1.340e-1036.59Uncharacterized protein n=1 Tax=Corchorus olitoriu... [more]
UPI000B8B1A173.610e-1037.21uncharacterized protein LOC110792073 n=1 Tax=Spina... [more]
UPI001C2558BC3.620e-1036.05uncharacterized protein LOC121796902 n=3 Tax=Salvi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50448contigH-paniculata_contig50448:733..1005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue2e-08
Seed eggNOG ortholog67593.Physo125584
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759,3QH7V@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size273
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930482.0203722-CDS-H-paniculata_contig50448:732..10051622930482.0203722-CDS-H-paniculata_contig50448:732..1005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50448 733..1005 -
1691481311.5922117-CDS-H-paniculata_contig50448:732..10051691481311.5922117-CDS-H-paniculata_contig50448:732..1005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50448 733..1005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50448.12303.1prot_H-paniculata_contig50448.12303.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50448 733..1005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50448.12303.1

>prot_H-paniculata_contig50448.12303.1 ID=prot_H-paniculata_contig50448.12303.1|Name=mRNA_H-paniculata_contig50448.12303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MGATRVQRRITPSLSFHHKKNRVDFTLDQVARDRTTFKTGFNTIHVDEAW
FYLIRDKEKVRMFPGEKIGSIKVQHKRHIPKVMFICAMSRP
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mRNA from alignment at H-paniculata_contig50448:733..1005-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50448.12303.1 ID=mRNA_H-paniculata_contig50448.12303.1|Name=mRNA_H-paniculata_contig50448.12303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=273bp|location=Sequence derived from alignment at H-paniculata_contig50448:733..1005- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGCAACGAGGGTTCAGCGGCGTATCACCCCAAGCCTGTCATTCCA CCACAAGAAGAACCGGGTCGACTTTACCCTGGACCAGGTCGCCCGCGATC GTACTACGTTCAAGACTGGCTTCAACACAATTCACGTCGACGAGGCGTGG TTCTACCTGATCCGTGACAAAGAGAAGGTGCGGATGTTCCCGGGAGAGAA GATAGGCTCCATAAAGGTGCAGCACAAGAGACACATTCCTAAGGTGATGT TCATCTGCGCCATGTCACGCCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig50448:733..1005-

>mRNA_H-paniculata_contig50448.12303.1 ID=mRNA_H-paniculata_contig50448.12303.1|Name=mRNA_H-paniculata_contig50448.12303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig50448:733..1005- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGCAACGAGGGTTCAGCGGCGTATCACCCCAAGCCTGTCATTCCA
CCACAAGAAGAACCGGGTCGACTTTACCCTGGACCAGGTCGCCCGCGATC
GTACTACGTTCAAGACTGGCTTCAACACAATTCACGTCGACGAGGCGTGG
TTCTACCTGATCCGTGACAAAGAGAAGGTGCGGATGTTCCCGGGAGAGAA
GATAGGCTCCATAAAGGTGCAGCACAAGAGACACATTCCTAAGGTGATGT
TCATCTGCGCCATGTCACGCCCTATGGGAGCAACGAGGGTTCAGCGGCGT
ATCACCCCAAGCCTGTCATTCCACCACAAGAAGAACCGGGTCGACTTTAC
CCTGGACCAGGTCGCCCGCGATCGTACTACGTTCAAGACTGGCTTCAACA
CAATTCACGTCGACGAGGCGTGGTTCTACCTGATCCGTGACAAAGAGAAG
GTGCGGATGTTCCCGGGAGAGAAGATAGGCTCCATAAAGGTGCAGCACAA
GAGACACATTCCTAAGGTGATGTTCATCTGCGCCATGTCACGCCCT
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