mRNA_H-paniculata_contig5041.12298.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5041.12298.1 vs. uniprot
Match: D7FNM5_ECTSI (SET domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNM5_ECTSI) HSP 1 Score: 414 bits (1065), Expect = 1.830e-136 Identity = 238/432 (55.09%), Postives = 285/432 (65.97%), Query Frame = 1
Query: 148 LTWDVRLAVALMEATADLQIGGKFWSLYGRLLPPPHTITVPFCLPERLLTQLHNEGMAARARKQIERLSSLFPVLMQTLLSHPQTAVYAKKQ----------GEPTT---------KDNDAAPMALTWAFAMVRSRAFAANDNLFAFVPFLDMANHDFA-PSANFTY-----EDPGVFRMRAMRDMTNGEEATISYGQQLDAEQLMVQYGFPEPSNVNLARPLM-DPRLFRDRTTSAQESAPPAGQEVTPTDKGQAVI---------------------GSRGEENAEGEDFDGADDLGEVQRRALMDDLFLQAQRQFAREADGNDSDFAKMVRRALPLIPPMATAMQELRGE-ESAAEESARAFLAELQAYRSANFPTTEEQDKELLSYCLSEGRGKVDERLVDVVRYRIGRKEAHTLAVDIVEAFLAPPP 1299
+TWDVRLA+AL+EAT+D Q+GGKFW +YGRLLP PHT+TVPFCLPERLL QLHN GMA RARKQ+ER+ SL+P LM+TLLSHP+TAVYA ++ GE T K+ DA PMAL WAFAMVRSRAFAA+ + FAFVPFLDMANH FA P+ANFTY PGVF+++AMR+++ GEE TISYG+QL+AEQLMVQYGFP P NV L PL L RD A E T T + GSRG L E +R LM++LFL+AQ++FAREA G++ F VR+ LPL+PP+AT + EL G+ E + A +L ELQAYRS NFP+TEEQD+ELLSYCL GRGKVD RL DVVRYR+GRKEAH+ A I+E F AP P
Sbjct: 1 MTWDVRLALALLEATSDPQVGGKFWHVYGRLLPQPHTVTVPFCLPERLLGQLHNSGMAERARKQVERVRSLYPDLMRTLLSHPKTAVYATRKTAEGEAAAAAGETATAAATKEAAEKETDAVPMALLWAFAMVRSRAFAADGDRFAFVPFLDMANHGFADPAANFTYISGGESQPGVFQLQAMRNISAGEEVTISYGEQLNAEQLMVQYGFPAPPNVPLELPLCGSDALVRDTVAVATEEVKETAGAATATAXXXXXVXXXXXXXXXXXXXXXXXXXXRGSRGA-------------LSEAERVGLMNELFLRAQQRFAREAGGDERRFEIGVRKVLPLVPPIATKIGELMGDGEDGMIKGAELYLEELQAYRSENFPSTEEQDRELLSYCLGNGRGKVDPRLADVVRYRLGRKEAHSTAAGILEEFTAPAP 419
BLAST of mRNA_H-paniculata_contig5041.12298.1 vs. uniprot
Match: A0A835YIR1_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIR1_9STRA) HSP 1 Score: 282 bits (721), Expect = 1.020e-85 Identity = 175/431 (40.60%), Postives = 244/431 (56.61%), Query Frame = 1
Query: 7 LLEVPSEACLWSTRDGVISGLYGQTDMCWEAAGDLREPVSDDQFARGLTWDVRLAVALMEATADLQIGGKFWSLYGRLLPPPHTITVPFCLPERLLTQLHNEGMAARARKQIERLSSLFPVLMQTLLSHPQTAVYAKKQGEPTTKDNDAAPMALTWAFAMVRSRAFAANDNLFAFVPFLDMANHDFAPSANFTYEDP-GVFRMRAMRDMTNGEEATISYGQQLDAEQLMVQYGFPEPSNVNLARPLMDPRLFRDRTTSAQESAPPAGQEVTPTDKGQAVIGSRGEENAEGEDFDGADDLGEVQRRALMDDLFLQAQRQFAREADGNDSDFAKMVRRALPLIPP----MATAMQELRGEESAAEESARA-FLAELQAYRSANFPTTEEQDKELLSYCLSE-GRG-KVDERLVDVVRYRIGRKEAHTLAVDIV 1275
+L +P CLWS RDGV+ GL GQTD+CW+ AGDLR+PV D +A+GLTWDVRLA+AL +ATAD+ +GG+FW LYGRLLP PH +TVP CLP LL ++ + +A RA+ Q +RLS LFP++MQT ++HP+TA Y+ G + P AL WAFA+VRSRAF+A ++ FAFVPFLDMANH+ P+ANFT++ G F++ A+ D+ + ISYGQ LD +L QYGF S+ N PP ++T A+G A DL ++L +D +++ F K + + +P + + +L A +A A LA +Q+Y A FPT+ E+D L S L+ G G VDER + + YR+ RK+ H LA D++
Sbjct: 10 VLVIPGNLCLWSNRDGVVGGLQGQTDLCWDQAGDLRDPVDDTSYAKGLTWDVRLALALQDATADIAVGGQFWDLYGRLLPAPHEVTVPLCLPSALLKEMQHAQLARRAQAQKDRLSGLFPLMMQTHMAHPRTACYSAL-GPGVLQS---LPFALQWAFALVRSRAFSAGNDQFAFVPFLDMANHNSNPNANFTFDSAIGSFKLTALTDVKADSQVYISYGQALDDGKLATQYGFCVASDEN--------------------PNPPPLADMT----------------AKGPQLMSAADL------LKFEELL----------SDASEAHF-KRLGTSSTTVPQHYYIVCAKLAQLAAASHAHPPTAAAQLLAGIQSYCKAEFPTSLEEDLALQSRILAAAGSGANVDERFLFALEYRMRRKDTHMLATDLL 383
BLAST of mRNA_H-paniculata_contig5041.12298.1 vs. uniprot
Match: A0A7S4D535_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D535_HETAK) HSP 1 Score: 204 bits (519), Expect = 5.480e-55 Identity = 111/257 (43.19%), Postives = 155/257 (60.31%), Query Frame = 1
Query: 1 QVLLEVPSEACLWSTRDGVIS-GLYGQTDMCWEAAGDLREPVSDDQFARGLTWDVRLAVALMEATADLQIGGKFWSLYGRLLPPPHTITVPFCLPERLLTQLHNEGMAARARKQIERLSSLFPVLMQTLLSHPQTAVYAKKQGEPTTKDNDAAPMALTWAFAMVRSRAFAANDNLFAFVPFLDMANHDFAPSANFTY-EDPGVFRMRAMRDMTNGEEATISYGQQLDAEQLMVQYGFPEPSNVNLARPLMDPRLFRD 765
++LL +P C+W+ RDG I GL GQ+DM W AGDLR D A+GLTWD+RLAVAL+EA ++ + G FW +YG +LP PHT+T+P C P+ L ++ N M A +Q RL S +P L++ HP+ +Y Q T P AL W FA+VRSR F+A+ FAFVPFLDM NH P+A+++Y E F + A++ + +G+E ISYGQ L + LMV+YGF N + + + +L D
Sbjct: 115 EMLLSIPGRLCIWANRDGTIDRGLDGQSDMTWAVAGDLRADYPDLLRAQGLTWDLRLAVALLEAASEQRCAGGFWDVYGFMLPAPHTVTMPLCFPQELTAEVQNPFMMKAAGQQQVRLESHYPTLVKPNY-HPKLKIY---QDLGMTSS---VPNALMWCFALVRSRCFSASPERFAFVPFLDMCNHWVKPNADYSYNEATDSFDLVALKPIRSGDEILISYGQGLSNDDLMVRYGFVIEGNPHASALMNYKKLVAD 364
BLAST of mRNA_H-paniculata_contig5041.12298.1 vs. uniprot
Match: R1CZ63_EMIHU (SET domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CZ63_EMIHU) HSP 1 Score: 196 bits (498), Expect = 1.490e-52 Identity = 108/236 (45.76%), Postives = 140/236 (59.32%), Query Frame = 1
Query: 1 QVLLEVPSEACLWSTRDGVISGLYGQTDMCWEAAGDLREPVSDDQFARGLTWDVRLAVALMEATADLQIGGKFWSLYGRLLPPPHTITVPFCLPERLLTQLHNEGMAARARKQIERLSSLFPVLMQTLLSHPQTAVYAKKQGEPTTKDNDAAPMALTWAFAMVRSRAFA-ANDNLFAFVPFLDMANHDFAPSANFTYEDPGVFRMRAMRDMTNGEEATISYGQQLDAEQLMVQYGF 705
+V L VP L + R G I GL GQTD+ W+AAGDLRE V + F RG TWDVRLA+A++EATA GG+ W Y R LP PH ++ P CLP LL +L +A+ A + E L+ L+ LM +HP TA Y + GE P L+WA+A+V SR FA + + F FVPFLDM H PSANFT ++ G+ +R +R + GEE TISYG + + QYGF
Sbjct: 90 EVALAVPRRLLLTAHRSGAIGGLAGQTDLVWDAAGDLREEVGEAMFKRGATWDVRLALAVLEATAGC--GGELWDAYRRFLPLPHELSSPVCLPAELLAELREPAVASAAAARNELLADLYAPLMAHE-AHPATAGYVARGGEAA---RGLVPAPLSWAYALVSSRCFALSGGDTFGFVPFLDMCQHSAVPSANFTSDERGIV-LRTLRPVAAGEEVTISYGGDYSSRRTFEQYGF 318
BLAST of mRNA_H-paniculata_contig5041.12298.1 vs. uniprot
Match: A0A0M0JQY2_9EUKA (Ribulose-bisphosphate carboxylase oxygenase large subunit n-chloroplast n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JQY2_9EUKA) HSP 1 Score: 181 bits (460), Expect = 7.320e-47 Identity = 104/235 (44.26%), Postives = 140/235 (59.57%), Query Frame = 1
Query: 4 VLLEVPSEACLWSTRDGVISGLYGQTDMCWEAAGDLREPVSDDQFARGLTWDVRLAVALMEATADLQIGGKFWSLYGRLLPPPHTITVPFCLPERLLTQLHNEGMAARARKQIERLSSLFPVLMQTLLSHPQTAVYAKKQGEPTTKDNDAAPMALTWAFAMVRSRAFA-ANDNLFAFVPFLDMANHDFAPSANFTYEDPGVFRMRAMRDMTNGEEATISYGQQLDAEQLMVQYGF 705
++L VP+ L + R G I GL GQT++ WEAAGDLRE V ++ F RG TWDVRLA+A+ EATA G FW Y +L+PPP ++T P CLP+ +L +L N + A+ + + L P L +HP TA Y + G P + P L +A+A+V SR FA A+ + FAFVPFLDMA H P+ANF + + A+ D+ GEE TI+Y +EQL QYGF
Sbjct: 87 IVLSVPASLLLTAHRSGRIGGLQGQTEVMWEAAGDLREEVGEELFQRGATWDVRLALAVYEATAGG--AGGFWDDYRKLMPPPPSMTHPLCLPQAMLPELQNVELQAKVQAKRALFQDLHPSL-HAHATHPVTASYTNR-GFPM----EYIPRPLPYAYALVVSRCFAMADGDTFAFVPFLDMAQHADVPTANFRVDAQDGATLTALADLKPGEEVTINYDPDYSSEQLFAQYGF 313
BLAST of mRNA_H-paniculata_contig5041.12298.1 vs. uniprot
Match: A0A7S4F9T8_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F9T8_CHRCT) HSP 1 Score: 172 bits (435), Expect = 4.880e-44 Identity = 105/239 (43.93%), Postives = 141/239 (59.00%), Query Frame = 1
Query: 1 QVLLEVPSEACLWSTRDGVISGLYGQTDMCWEAAGDLREPVSDDQFARGLTWDVRLAVALMEATADLQIGGKFWSLYGRLLPPPHTITVPFCLPERLLTQLHNEGMAARARKQIERLSSLFPVLMQTLLSHPQTAVYAKKQGEPTTKDNDAAPMALTWAFAMVRSRAFAAND-NLFAFVPFLDMANHDFAPSANFTYEDPGVFRMRAMRDMTNGEEATISY-GQQLDAEQLMVQYGFPE 711
+VL+ VP + L + R GV+SGL GQTD+ +AAGDLR V + F RG TWDVRLA+A+ EATA GG FW Y +LLP P LPE L+ +L + + RA+++ L SL+P L Q +HP TA+Y + G P + P L W +MV SR F+ D + FAFVPFLDM H AP+ANF+ G F + A+R + GEE TISY G + + ++ YGF +
Sbjct: 142 EVLVRVPRDLLLTAHRSGVVSGLIGQTDVMLDAAGDLRSEVGEKMFERGATWDVRLALAVFEATAGC--GGPFWDRYRQLLPLPPFSMSAASLPEFLIDELQDPVLEQRAKQKASMLVSLYPALSQHA-AHPATAMYIR-MGAPL----EMIPSPLAWCHSMVVSRCFSMADVDTFAFVPFLDMCQHAEAPTANFSSVS-GDFELTALRPIEAGEEITISYDGNEYASRRMFELYGFSQ 371
BLAST of mRNA_H-paniculata_contig5041.12298.1 vs. uniprot
Match: A0A7S0NTJ5_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NTJ5_9EUKA) HSP 1 Score: 172 bits (436), Expect = 8.120e-44 Identity = 106/235 (45.11%), Postives = 135/235 (57.45%), Query Frame = 1
Query: 7 LLEVPSEACLWSTRDGVISGLYGQTDMCWEAAGDLREPVSDDQFARGLTWDVRLAVALMEATADLQIGGKFWSLYGRLLPPPHTITVPFCLPERLLTQLHNEGMAARARKQIERLSSLFPVLMQTLLSHPQTAVYAKKQGEPTTKDNDAAPMALTWAFAMVRSRAFA-ANDNLFAFVPFLDMANHDFAPSANFTYEDPGVFRMRAMRDMTNGEEATISY-GQQLDAEQLMVQYGF 705
+L VPSE CL + R GVI GL GQTD +AAGDLR+ V ++ F +G TWDVRLA+A+ EATA GG FW Y RLLP P T LP LL +L + + R + L L+P L T HP T+ YA + P+ L W +++V SR FA A+++ FAFVPFLDM H +PSANFT D G F + +R M GE TISY G D+ ++ YGF
Sbjct: 52 ILRVPSELCLTAHRSGVIGGLIGQTDAMVDAAGDLRDEVGEEAFNQGATWDVRLALAVFEATAGC--GGPFWDEYRRLLPLPPFATAAASLPPVLLEELQDPVLQKRGLAKDALLRELYPSLA-THSVHPVTSSYAAMDAPL-----ELVPLPLQWTYSLVVSRCFAMADEDTFAFVPFLDMCQHSASPSANFTSSD-GDFVLSTLRRMQAGEAVTISYDGDAYDSRRMFELYGF 277
BLAST of mRNA_H-paniculata_contig5041.12298.1 vs. uniprot
Match: A0A7S2MSJ8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MSJ8_9STRA) HSP 1 Score: 150 bits (378), Expect = 8.140e-36 Identity = 99/245 (40.41%), Postives = 133/245 (54.29%), Query Frame = 1
Query: 1 QVLLEVPSEACLWSTRDGVISGLYGQTDMCWEAAGDLREPVSDDQFARGLTWDVRLAVALMEATADLQIG--GKFWSLYGRLLPPPHTIT-VPFCLPERLLTQLHNEGMAARARKQIERLSSLFPVLMQTLLSHPQTAVYAKKQGEPTTKDNDAAPMALTWAFAMVRSRAFAANDNL--FAFVPFLDMANHDFAPSANFTYE---DPGV--FRMRAMRDMTNGEEATISYGQQLDAEQLMVQYGF 705
+ +L VP EACL R G +SGL GQTD+ E AGDLRE + D + R +TWD+RLA+ L+EAT+ +G G+ W Y LLPP H +P LP LL +L + + RA + L + P HP A G P + + L WA A V SR+F D++ FAFVPF D+ANH P+ NFT E + GV F ++A++D+ GEE TI YG D ++ YGF
Sbjct: 75 ETVLAVPIEACLCVQRRGSVSGLQGQTDLTMEVAGDLREELPGDAW-RTITWDIRLALGLLEATSGNNLGTPGELWDGYFHLLPPLHRGPHIPLVLPPALLPELQDLELTRRAERMSALLQDILPECTDPFC-HPAGA----NGGPPRMQSSP-----LHWALAQVWSRSFTCGDDIDSFAFVPFFDLANHKDIPNTNFTTEIHPEAGVECFVLKALQDIGAGEEVTICYGSH-DPARMFELYGF 307
BLAST of mRNA_H-paniculata_contig5041.12298.1 vs. uniprot
Match: A0A7S1NQL8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NQL8_9EUGL) HSP 1 Score: 130 bits (327), Expect = 8.080e-31 Identity = 81/192 (42.19%), Postives = 106/192 (55.21%), Query Frame = 1
Query: 151 TWDVRLAVALMEATADLQIGGK---FWSLYGRLLPPPHTITVPFCLPERLLTQLHNEGMAARARKQIERLSSLFPVLMQTLLSHPQTAVYAKKQGEPTTKDNDAAPMALTWAFAMVRSRAFAANDNLFAFVPFLDMANHDFAPSANFTYE-DPGVFRMRAMRDMTNGEEATISYGQQLDAEQLMVQYGFPEP 714
TWD+RLA+ L+EA I G+ FW+ YG L+ P T+ P L +LL +L +E MA A +Q +RL LFP ++ VYA + P+ L W +A+VRSR F A + FAFVPFLDMANH P+A+F Y F +RA+R + EE TISYG D +L QYGF EP
Sbjct: 14 TWDIRLAIKLLEA-----IDGRWSPFWASYGELMQPYLTMANPMLLYPQLLVELQHEDMADAAVQQQQRLRDLFPDMVP--------GVYAPAEEFPSP---------LMWTWALVRSRCFTAGEQAFAFVPFLDMANHLEIPNADFEYAPQDSCFYLRAVRQIRQNEEVTISYGAAYDNRRLFAQYGFVEP 183
BLAST of mRNA_H-paniculata_contig5041.12298.1 vs. uniprot
Match: A0A7S3SFS5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SFS5_9SPIT) HSP 1 Score: 126 bits (317), Expect = 5.500e-30 Identity = 79/187 (42.25%), Postives = 102/187 (54.55%), Query Frame = 1
Query: 151 TWDVRLAVALMEATADLQIGGKFWSLYGRLLPPPHTITVPFCLPERLLTQLHNEGMAARARKQIERLSSLFPVLMQTLLSHPQTAVYAKKQGEPTTKDNDAAPMALTWAFAMVRSRAFAAND-NLFAFVPFLDMANHDFAPSANFTYEDPGVFRMRAMRDMTNGEEATISY-GQQLDAEQLMVQYGF 705
TWDVRLA+A+MEATA GG FW Y +LLP P ++ CLP + L + + +A RL L+P L TL +HP T Y ++ GE P L W A+V SR F+ D + FAF PFLDMANH P+ANFT G + A+RDM+ G+E TI Y G + + YGF
Sbjct: 2 TWDVRLALAVMEATAGA--GGPFWDGYRQLLPLPPHVSNAACLPVGFIPMLCDAVLEKQAHDTRARLRKLYPTL-HTLSAHPATGFYEQRFGEEAV---GYIPSPLDWCHALVVSRCFSTVDEDTFAFTPFLDMANHAETPTANFTTGPDGSMHLYALRDMSAGDEVTICYDGGSYSSRRFFELYGF 182 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5041.12298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5041.12298.1 >prot_H-paniculata_contig5041.12298.1 ID=prot_H-paniculata_contig5041.12298.1|Name=mRNA_H-paniculata_contig5041.12298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=445bp MCWEAAGDLREPVSDDQFARGLTWDVRLAVALMEATADLQIGGKFWSLYGback to top mRNA from alignment at H-paniculata_contig5041:328..5662+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5041.12298.1 ID=mRNA_H-paniculata_contig5041.12298.1|Name=mRNA_H-paniculata_contig5041.12298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5335bp|location=Sequence derived from alignment at H-paniculata_contig5041:328..5662+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5041:328..5662+ >mRNA_H-paniculata_contig5041.12298.1 ID=mRNA_H-paniculata_contig5041.12298.1|Name=mRNA_H-paniculata_contig5041.12298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2670bp|location=Sequence derived from alignment at H-paniculata_contig5041:328..5662+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |